RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 OR8U8P0C7N1 319 aa2.33□□□□□ -2.04
SCFD1-216ENST00000555550 TOP1P11387 765 aaKnown RBP2.33□□□□□ -2.04
SCFD1-216ENST00000555550 CCNA2P20248 432 aa2.33□□□□□ -2.04
SCFD1-216ENST00000555550 CDH5P33151 784 aaPredicted RBP2.33□□□□□ -2.04
SCFD1-216ENST00000555550 RPL4P36578 427 aaKnown RBP2.33□□□□□ -2.04
SCFD1-216ENST00000555550 MAGEA4P43358 317 aa2.33□□□□□ -2.04
SCFD1-216ENST00000555550 DHPSP49366 369 aaPredicted RBP2.33□□□□□ -2.04
SCFD1-216ENST00000555550 PLOD1Q02809 727 aaPredicted RBP2.33□□□□□ -2.04
SCFD1-216ENST00000555550 MORF4L2Q15014 288 aa2.33□□□□□ -2.04
SCFD1-216ENST00000555550 ZNF674Q2M3X9 581 aa2.33□□□□□ -2.04
SCFD1-216ENST00000555550 IYDQ6PHW0 289 aa2.33□□□□□ -2.04
SCFD1-216ENST00000555550 CXCL17Q6UXB2 119 aa2.33□□□□□ -2.04
SCFD1-216ENST00000555550 HACD2Q6Y1H2 254 aa2.33□□□□□ -2.04
SCFD1-216ENST00000555550 IL34Q6ZMJ4 242 aa2.33□□□□□ -2.04
SCFD1-216ENST00000555550 GOLGA7Q7Z5G4 137 aa2.33□□□□□ -2.04
SCFD1-216ENST00000555550 PPP1R27Q86WC6 154 aa2.33□□□□□ -2.04
SCFD1-216ENST00000555550 PEX5LQ8IYB4 626 aa2.33□□□□□ -2.04
SCFD1-216ENST00000555550 LRRC17Q8N6Y2 441 aa2.33□□□□□ -2.04
SCFD1-216ENST00000555550 ZNF397Q8NF99 534 aaPredicted RBP2.33□□□□□ -2.04
SCFD1-216ENST00000555550 SRSF12Q8WXF0 261 aaKnown RBP2.33□□□□□ -2.04
SCFD1-216ENST00000555550 DESI2Q9BSY9 194 aa2.33□□□□□ -2.04
SCFD1-216ENST00000555550 NDUFAF3Q9BU61 184 aa2.33□□□□□ -2.04
SCFD1-216ENST00000555550 GHRLQ9UBU3 117 aa2.33□□□□□ -2.04
SCFD1-216ENST00000555550 ZNF223Q9UK11 482 aaPredicted RBP2.33□□□□□ -2.04
SCFD1-216ENST00000555550 EXOSC1Q9Y3B2 195 aaKnown RBP2.33□□□□□ -2.04
SCFD1-216ENST00000555550 SMIM28A0A1B0GU29 152 aa2.32□□□□□ -2.04
SCFD1-216ENST00000555550 USP27XA6NNY8 438 aa2.32□□□□□ -2.04
SCFD1-216ENST00000555550 C19orf81C9J6K1 198 aa2.32□□□□□ -2.04
SCFD1-216ENST00000555550 PPIHO43447 177 aaKnown RBP2.32□□□□□ -2.04
SCFD1-216ENST00000555550 TOXO94900 526 aa2.32□□□□□ -2.04
SCFD1-216ENST00000555550 TIMP1P01033 207 aa2.32□□□□□ -2.04
SCFD1-216ENST00000555550 SLC35G4P0C7Q5 338 aa2.32□□□□□ -2.04
SCFD1-216ENST00000555550 MUTP22033 750 aa2.32□□□□□ -2.04
SCFD1-216ENST00000555550 CD1BP29016 333 aa2.32□□□□□ -2.04
SCFD1-216ENST00000555550 NTSP30990 170 aa2.32□□□□□ -2.04
SCFD1-216ENST00000555550 HNRNPFP52597 415 aaKnown RBP2.32□□□□□ -2.04
SCFD1-216ENST00000555550 LINC00315P59091 139 aa2.32□□□□□ -2.04
SCFD1-216ENST00000555550 KRTAP10-10P60014 251 aa2.32□□□□□ -2.04
SCFD1-216ENST00000555550 HERVK_113P63132 956 aa2.32□□□□□ -2.04
SCFD1-216ENST00000555550 ERVK-8P63133 956 aa2.32□□□□□ -2.04
SCFD1-216ENST00000555550 KARSQ15046 597 aaKnown RBP2.32□□□□□ -2.04
SCFD1-216ENST00000555550 UBE2V2Q15819 145 aa2.32□□□□□ -2.04
SCFD1-216ENST00000555550 ZNF630Q2M218 657 aaPredicted RBP2.32□□□□□ -2.04
SCFD1-216ENST00000555550 CYB5R2Q6BCY4 276 aa2.32□□□□□ -2.04
SCFD1-216ENST00000555550 CCDC91Q7Z6B0 441 aa2.32□□□□□ -2.04
SCFD1-216ENST00000555550 UNC45BQ8IWX7 931 aa2.32□□□□□ -2.04
SCFD1-216ENST00000555550 ARIH2OSQ8N7S6 290 aa2.32□□□□□ -2.04
SCFD1-216ENST00000555550 WDR36Q8NI36 951 aaKnown RBP2.32□□□□□ -2.04
SCFD1-216ENST00000555550 FBXO30Q8TB52 745 aa2.32□□□□□ -2.04
SCFD1-216ENST00000555550 TAF4BQ92750 862 aa2.32□□□□□ -2.04
SCFD1-216ENST00000555550 ART4Q93070 314 aa2.32□□□□□ -2.04
SCFD1-216ENST00000555550 HAVCR1Q96D42 359 aa2.32□□□□□ -2.04
SCFD1-216ENST00000555550 TMEM80Q96HE8 168 aa2.32□□□□□ -2.04
SCFD1-216ENST00000555550 ZNF560Q96MR9 790 aa2.32□□□□□ -2.04
SCFD1-216ENST00000555550 CBWD1Q9BRT8 395 aa2.32□□□□□ -2.04
SCFD1-216ENST00000555550 ERVK-6Q9BXR3 956 aa2.32□□□□□ -2.04
SCFD1-216ENST00000555550 DDX47Q9H0S4 455 aaKnown RBP2.32□□□□□ -2.04
SCFD1-216ENST00000555550 HOMER3Q9NSC5 361 aa2.32□□□□□ -2.04
SCFD1-216ENST00000555550 COMMD8Q9NX08 183 aa2.32□□□□□ -2.04
SCFD1-216ENST00000555550 ONECUT1Q9UBC0 465 aa2.32□□□□□ -2.04
SCFD1-216ENST00000555550 NAP1L2Q9ULW6 460 aaPredicted RBP2.32□□□□□ -2.04
SCFD1-216ENST00000555550 DUSP12Q9UNI6 340 aa2.32□□□□□ -2.04
SCFD1-216ENST00000555550 IGKV2D-24A0A075B6R9 120 aa2.31□□□□□ -2.04
SCFD1-216ENST00000555550 A0A1W2PRQ8 180 aa2.31□□□□□ -2.04
SCFD1-216ENST00000555550 SAGE2PA6NJ88 616 aa2.31□□□□□ -2.04
SCFD1-216ENST00000555550 TCP11X1B4DZS4 312 aa2.31□□□□□ -2.04
SCFD1-216ENST00000555550 RAMP1O60894 148 aa2.31□□□□□ -2.04
SCFD1-216ENST00000555550 SCRG1O75711 98 aa2.31□□□□□ -2.04
SCFD1-216ENST00000555550 CABYRO75952 493 aa2.31□□□□□ -2.04
SCFD1-216ENST00000555550 SUPT7LO94864 414 aa2.31□□□□□ -2.04
SCFD1-216ENST00000555550 CD55P08174 381 aa2.31□□□□□ -2.04
SCFD1-216ENST00000555550 RPS2P15880 293 aaKnown RBP2.31□□□□□ -2.04
SCFD1-216ENST00000555550 ADORA2BP29275 332 aa2.31□□□□□ -2.04
SCFD1-216ENST00000555550 UGT1A5P35504 534 aa2.31□□□□□ -2.04
SCFD1-216ENST00000555550 CASP3P42574 277 aa2.31□□□□□ -2.04
SCFD1-216ENST00000555550 RPL29P47914 159 aaKnown RBP2.31□□□□□ -2.04
SCFD1-216ENST00000555550 EMDP50402 254 aa2.31□□□□□ -2.04
SCFD1-216ENST00000555550 GFPT1Q06210 699 aaPredicted RBP2.31□□□□□ -2.04
SCFD1-216ENST00000555550 ACSF3Q4G176 576 aaPredicted RBP2.31□□□□□ -2.04
SCFD1-216ENST00000555550 AGKQ53H12 422 aa2.31□□□□□ -2.04
SCFD1-216ENST00000555550 CYBRD1Q53TN4 286 aa2.31□□□□□ -2.04
SCFD1-216ENST00000555550 DLEU7Q6UYE1 221 aa2.31□□□□□ -2.04
SCFD1-216ENST00000555550 ZNF786Q8N393 782 aa2.31□□□□□ -2.04
SCFD1-216ENST00000555550 CCDC71LQ8N9Z2 235 aa2.31□□□□□ -2.04
SCFD1-216ENST00000555550 ZBTB44Q8NCP5 570 aa2.31□□□□□ -2.04
SCFD1-216ENST00000555550 OR9A1PQ8NGU1 263 aa2.31□□□□□ -2.04
SCFD1-216ENST00000555550 CCDC51Q96ER9 411 aa2.31□□□□□ -2.04
SCFD1-216ENST00000555550 DTD2Q96FN9 168 aa2.31□□□□□ -2.04
SCFD1-216ENST00000555550 NAP1L3Q99457 506 aaPredicted RBP2.31□□□□□ -2.04
SCFD1-216ENST00000555550 TEX13AQ9BXU3 409 aaPredicted RBP2.31□□□□□ -2.04
SCFD1-216ENST00000555550 NARFLQ9H6Q4 476 aa2.31□□□□□ -2.04
SCFD1-216ENST00000555550 CWC25Q9NXE8 425 aaPredicted RBP2.31□□□□□ -2.04
SCFD1-216ENST00000555550 OR1A1Q9P1Q5 309 aa2.31□□□□□ -2.04
SCFD1-216ENST00000555550 LCMT1Q9UIC8 334 aa2.31□□□□□ -2.04
SCFD1-216ENST00000555550 DYNC1LI1Q9Y6G9 523 aaKnown RBP2.31□□□□□ -2.04
SCFD1-216ENST00000555550 A0A0J9YXY3 114 aa2.3□□□□□ -2.04
SCFD1-216ENST00000555550 TTC26A0AVF1 554 aa2.3□□□□□ -2.04
SCFD1-216ENST00000555550 TMEM89A2RUT3 159 aa2.3□□□□□ -2.04
SCFD1-216ENST00000555550 TUBAL3A6NHL2 446 aa2.3□□□□□ -2.04
SCFD1-216ENST00000555550 FMO6PO60774 539 aa2.3□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms