RNA–Protein interactions for RNA: ENST00000553888.5

VIPAS39-206, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 2 BASIC

Gene VIPAS39, Length 2,934 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-206ENST00000553888 LMF1Q96S06 567 aa11.84□□□□□ -0.51
VIPAS39-206ENST00000553888 YTHDF1Q9BYJ9 559 aaKnown RBP11.84□□□□□ -0.51
VIPAS39-206ENST00000553888 ZNF350Q9GZX5 532 aa11.84□□□□□ -0.51
VIPAS39-206ENST00000553888 GAREM1Q9H706 876 aa11.84□□□□□ -0.51
VIPAS39-206ENST00000553888 FOLH1BQ9HBA9 442 aa11.84□□□□□ -0.51
VIPAS39-206ENST00000553888 ZNF226Q9NYT6 803 aa11.84□□□□□ -0.51
VIPAS39-206ENST00000553888 REV1Q9UBZ9 1251 aa11.84□□□□□ -0.51
VIPAS39-206ENST00000553888 ENO4A6NNW6 628 aa11.84□□□□□ -0.51
VIPAS39-206ENST00000553888 MAP3K8P41279 467 aa11.84□□□□□ -0.51
VIPAS39-206ENST00000553888 RGS8P57771 180 aaPredicted RBP11.84□□□□□ -0.51
VIPAS39-206ENST00000553888 PLAURQ03405 335 aa11.84□□□□□ -0.51
VIPAS39-206ENST00000553888 MVKQ03426 396 aa11.84□□□□□ -0.51
VIPAS39-206ENST00000553888 INAVAQ3KP66 663 aa11.84□□□□□ -0.51
VIPAS39-206ENST00000553888 VWA2Q5GFL6 755 aa11.84□□□□□ -0.51
VIPAS39-206ENST00000553888 TCTE1Q5JU00 501 aa11.84□□□□□ -0.51
VIPAS39-206ENST00000553888 BROXQ5VW32 411 aa11.84□□□□□ -0.51
VIPAS39-206ENST00000553888 GPR141Q7Z602 305 aa11.84□□□□□ -0.51
VIPAS39-206ENST00000553888 NKAIN4Q8IVV8 208 aa11.84□□□□□ -0.51
VIPAS39-206ENST00000553888 C1orf210Q8IVY1 113 aa11.84□□□□□ -0.51
VIPAS39-206ENST00000553888 ZNF614Q8N883 585 aa11.84□□□□□ -0.51
VIPAS39-206ENST00000553888 TMEM105Q8N8V8 129 aa11.84□□□□□ -0.51
VIPAS39-206ENST00000553888 OR4K5Q8NGD3 323 aa11.84□□□□□ -0.51
VIPAS39-206ENST00000553888 PRRC1Q96M27 445 aa11.84□□□□□ -0.51
VIPAS39-206ENST00000553888 DGAT2Q96PD7 388 aa11.84□□□□□ -0.51
VIPAS39-206ENST00000553888 CALML5Q9NZT1 146 aa11.84□□□□□ -0.51
VIPAS39-206ENST00000553888 SLC13A4Q9UKG4 626 aa11.84□□□□□ -0.51
VIPAS39-206ENST00000553888 HEMK1Q9Y5R4 338 aaPredicted RBP11.84□□□□□ -0.51
VIPAS39-206ENST00000553888 A0A1B0GTQ1 180 aa11.83□□□□□ -0.51
VIPAS39-206ENST00000553888 ABCB7O75027 752 aa11.83□□□□□ -0.51
VIPAS39-206ENST00000553888 MMP11P24347 488 aa11.83□□□□□ -0.51
VIPAS39-206ENST00000553888 HOXA6P31267 233 aa11.83□□□□□ -0.51
VIPAS39-206ENST00000553888 MINDY4Q4G0A6 757 aa11.83□□□□□ -0.51
VIPAS39-206ENST00000553888 ENTPD8Q5MY95 495 aa11.83□□□□□ -0.51
VIPAS39-206ENST00000553888 PRAMEF8Q5VWM4 474 aa11.83□□□□□ -0.51
VIPAS39-206ENST00000553888 PRAMEF7Q5VXH5 474 aa11.83□□□□□ -0.51
VIPAS39-206ENST00000553888 NPSR1Q6W5P4 371 aa11.83□□□□□ -0.51
VIPAS39-206ENST00000553888 SHISA6Q6ZSJ9 500 aa11.83□□□□□ -0.51
VIPAS39-206ENST00000553888 ZER1Q7Z7L7 766 aa11.83□□□□□ -0.51
VIPAS39-206ENST00000553888 EID2Q8N6I1 236 aa11.83□□□□□ -0.51
VIPAS39-206ENST00000553888 IQCF1Q8N6M8 205 aa11.83□□□□□ -0.51
VIPAS39-206ENST00000553888 MORN4Q8NDC4 146 aa11.83□□□□□ -0.51
VIPAS39-206ENST00000553888 ADAMTS16Q8TE57 1224 aa11.83□□□□□ -0.51
VIPAS39-206ENST00000553888 CD180Q99467 661 aa11.83□□□□□ -0.51
VIPAS39-206ENST00000553888 DGCR6LQ9BY27 220 aa11.83□□□□□ -0.51
VIPAS39-206ENST00000553888 LHPPQ9H008 270 aa11.83□□□□□ -0.51
VIPAS39-206ENST00000553888 MTHFD2LQ9H903 347 aaPredicted RBP11.83□□□□□ -0.51
VIPAS39-206ENST00000553888 LANCL2Q9NS86 450 aa11.83□□□□□ -0.51
VIPAS39-206ENST00000553888 SELENONQ9NZV5 590 aa11.83□□□□□ -0.51
VIPAS39-206ENST00000553888 FTSJ1Q9UET6 329 aa11.83□□□□□ -0.51
VIPAS39-206ENST00000553888 MN1Q10571 1320 aaPredicted RBP11.83□□□□□ -0.52
VIPAS39-206ENST00000553888 CCDC163A0A0D9SF12 145 aa11.83□□□□□ -0.52
VIPAS39-206ENST00000553888 A0A1W2PQM1 296 aa11.83□□□□□ -0.52
VIPAS39-206ENST00000553888 AGAP5A6NIR3 686 aa11.83□□□□□ -0.52
VIPAS39-206ENST00000553888 FAAHO00519 579 aa11.83□□□□□ -0.52
VIPAS39-206ENST00000553888 FAM20BO75063 409 aa11.83□□□□□ -0.52
VIPAS39-206ENST00000553888 KCNK2O95069 426 aa11.83□□□□□ -0.52
VIPAS39-206ENST00000553888 SLC5A2P31639 672 aa11.83□□□□□ -0.52
VIPAS39-206ENST00000553888 CNR2P34972 360 aa11.83□□□□□ -0.52
VIPAS39-206ENST00000553888 EEF1A1P68104 462 aaKnown RBP11.83□□□□□ -0.52
VIPAS39-206ENST00000553888 MAP4K2Q12851 820 aa11.83□□□□□ -0.52
VIPAS39-206ENST00000553888 MRPL2Q5T653 305 aaKnown RBP11.83□□□□□ -0.52
VIPAS39-206ENST00000553888 GARNL3Q5VVW2 1013 aa11.83□□□□□ -0.52
VIPAS39-206ENST00000553888 GPR107Q5VW38 600 aa11.83□□□□□ -0.52
VIPAS39-206ENST00000553888 PEX5LQ8IYB4 626 aa11.83□□□□□ -0.52
VIPAS39-206ENST00000553888 ZNF595Q8IYB9 648 aa11.83□□□□□ -0.52
VIPAS39-206ENST00000553888 ZNF619Q8N2I2 560 aa11.83□□□□□ -0.52
VIPAS39-206ENST00000553888 PARP8Q8N3A8 854 aa11.83□□□□□ -0.52
VIPAS39-206ENST00000553888 D2HGDHQ8N465 521 aa11.83□□□□□ -0.52
VIPAS39-206ENST00000553888 PTCHD1Q96NR3 888 aa11.83□□□□□ -0.52
VIPAS39-206ENST00000553888 MESP1Q9BRJ9 268 aa11.83□□□□□ -0.52
VIPAS39-206ENST00000553888 PNO1Q9NRX1 252 aaKnown RBP11.83□□□□□ -0.52
VIPAS39-206ENST00000553888 NLGN3Q9NZ94 848 aa11.83□□□□□ -0.52
VIPAS39-206ENST00000553888 MRPS33Q9Y291 106 aaKnown RBP11.83□□□□□ -0.52
VIPAS39-206ENST00000553888 KIF26BQ2KJY2 2108 aa11.83□□□□□ -0.52
VIPAS39-206ENST00000553888 A0A087WUU8 490 aa11.83□□□□□ -0.52
VIPAS39-206ENST00000553888 A0A1W2PRQ8 180 aa11.83□□□□□ -0.52
VIPAS39-206ENST00000553888 PIP5K1CO60331 668 aa11.83□□□□□ -0.52
VIPAS39-206ENST00000553888 STX11O75558 287 aa11.83□□□□□ -0.52
VIPAS39-206ENST00000553888 TP53P04637 393 aaPredicted RBP11.83□□□□□ -0.52
VIPAS39-206ENST00000553888 PRKAR1BP31321 381 aa11.83□□□□□ -0.52
VIPAS39-206ENST00000553888 GPR3P46089 330 aa11.83□□□□□ -0.52
VIPAS39-206ENST00000553888 POU6F2P78424 691 aaPredicted RBP11.83□□□□□ -0.52
VIPAS39-206ENST00000553888 CCL7P80098 99 aa11.83□□□□□ -0.52
VIPAS39-206ENST00000553888 DGCR6Q14129 220 aa11.83□□□□□ -0.52
VIPAS39-206ENST00000553888 AHSA2Q719I0 299 aa11.83□□□□□ -0.52
VIPAS39-206ENST00000553888 LAPTM4BQ86VI4 370 aa11.83□□□□□ -0.52
VIPAS39-206ENST00000553888 ZNF540Q8NDQ6 660 aa11.83□□□□□ -0.52
VIPAS39-206ENST00000553888 DIO2Q92813 273 aa11.83□□□□□ -0.52
VIPAS39-206ENST00000553888 EDAQ92838 391 aa11.83□□□□□ -0.52
VIPAS39-206ENST00000553888 MCHR1Q99705 422 aa11.83□□□□□ -0.52
VIPAS39-206ENST00000553888 PSD2Q9BQI7 771 aa11.83□□□□□ -0.52
VIPAS39-206ENST00000553888 UCK2Q9BZX2 261 aa11.83□□□□□ -0.52
VIPAS39-206ENST00000553888 DUSP22Q9NRW4 184 aa11.83□□□□□ -0.52
VIPAS39-206ENST00000553888 FGF21Q9NSA1 209 aa11.83□□□□□ -0.52
VIPAS39-206ENST00000553888 CNIH4Q9P003 139 aa11.83□□□□□ -0.52
VIPAS39-206ENST00000553888 NUP210LQ5VU65 1888 aa11.82□□□□□ -0.52
VIPAS39-206ENST00000553888 FREM2Q5SZK8 3169 aa11.82□□□□□ -0.52
VIPAS39-206ENST00000553888 H3BN98 237 aa11.82□□□□□ -0.52
VIPAS39-206ENST00000553888 CLDN4O14493 209 aa11.82□□□□□ -0.52
VIPAS39-206ENST00000553888 NDUFB5O43674 189 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms