RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 F3P13726 295 aa7.01□□□□□ -1.29
LIMA1-213ENST00000552720 MYOGP15173 224 aa7.01□□□□□ -1.29
LIMA1-213ENST00000552720 GSTM3P21266 225 aa7.01□□□□□ -1.29
LIMA1-213ENST00000552720 CTBP2P56545 445 aa7.01□□□□□ -1.29
LIMA1-213ENST00000552720 DMPKQ09013 629 aa7.01□□□□□ -1.29
LIMA1-213ENST00000552720 IL18Q14116 193 aa7.01□□□□□ -1.29
LIMA1-213ENST00000552720 TRAM2Q15035 370 aa7.01□□□□□ -1.29
LIMA1-213ENST00000552720 CCNJQ5T5M9 372 aa7.01□□□□□ -1.29
LIMA1-213ENST00000552720 AGBL4Q5VU57 503 aa7.01□□□□□ -1.29
LIMA1-213ENST00000552720 AADACL4Q5VUY2 407 aa7.01□□□□□ -1.29
LIMA1-213ENST00000552720 MRM1Q6IN84 353 aaKnown RBP7.01□□□□□ -1.29
LIMA1-213ENST00000552720 RRM2BQ7LG56 351 aa7.01□□□□□ -1.29
LIMA1-213ENST00000552720 ZNF438Q7Z4V0 828 aa7.01□□□□□ -1.29
LIMA1-213ENST00000552720 MRGPREQ86SM8 312 aa7.01□□□□□ -1.29
LIMA1-213ENST00000552720 OR4N5Q8IXE1 308 aa7.01□□□□□ -1.29
LIMA1-213ENST00000552720 Q8N402 240 aa7.01□□□□□ -1.29
LIMA1-213ENST00000552720 ARIH2OSQ8N7S6 290 aa7.01□□□□□ -1.29
LIMA1-213ENST00000552720 GDPD1Q8N9F7 314 aa7.01□□□□□ -1.29
LIMA1-213ENST00000552720 ENKURQ8TC29 256 aa7.01□□□□□ -1.29
LIMA1-213ENST00000552720 SMAP2Q8WU79 429 aaPredicted RBP7.01□□□□□ -1.29
LIMA1-213ENST00000552720 NACC2Q96BF6 587 aa7.01□□□□□ -1.29
LIMA1-213ENST00000552720 ELP4Q96EB1 424 aa7.01□□□□□ -1.29
LIMA1-213ENST00000552720 GIMAP5Q96F15 307 aa7.01□□□□□ -1.29
LIMA1-213ENST00000552720 SLC35A4Q96G79 324 aa7.01□□□□□ -1.29
LIMA1-213ENST00000552720 ZNF764Q96H86 408 aaPredicted RBP7.01□□□□□ -1.29
LIMA1-213ENST00000552720 SAMD8Q96LT4 415 aa7.01□□□□□ -1.29
LIMA1-213ENST00000552720 FRMD6Q96NE9 622 aa7.01□□□□□ -1.29
LIMA1-213ENST00000552720 SLC38A2Q96QD8 506 aa7.01□□□□□ -1.29
LIMA1-213ENST00000552720 SECISBP2Q96T21 854 aaKnown RBP7.01□□□□□ -1.29
LIMA1-213ENST00000552720 SPATA5L1Q9BVQ7 753 aa7.01□□□□□ -1.29
LIMA1-213ENST00000552720 NDEL1Q9GZM8 345 aa7.01□□□□□ -1.29
LIMA1-213ENST00000552720 RNF32Q9H0A6 362 aa7.01□□□□□ -1.29
LIMA1-213ENST00000552720 WDR26Q9H7D7 661 aa7.01□□□□□ -1.29
LIMA1-213ENST00000552720 PPP1R3EQ9H7J1 279 aa7.01□□□□□ -1.29
LIMA1-213ENST00000552720 HINT3Q9NQE9 182 aaKnown RBP7.01□□□□□ -1.29
LIMA1-213ENST00000552720 NLKQ9UBE8 527 aa7.01□□□□□ -1.29
LIMA1-213ENST00000552720 ENTPD4Q9Y227 616 aa7.01□□□□□ -1.29
LIMA1-213ENST00000552720 SIRT4Q9Y6E7 314 aaPredicted RBP7.01□□□□□ -1.29
LIMA1-213ENST00000552720 TICRRQ7Z2Z1 1910 aa7.01□□□□□ -1.29
LIMA1-213ENST00000552720 F5P12259 2224 aa7.01□□□□□ -1.29
LIMA1-213ENST00000552720 LOC102723532A0A0G2JNH3 316 aa7.01□□□□□ -1.29
LIMA1-213ENST00000552720 A0A1W2PP55 124 aa7.01□□□□□ -1.29
LIMA1-213ENST00000552720 C1QTNF3-AMACRE9PGA6 284 aa7.01□□□□□ -1.29
LIMA1-213ENST00000552720 SEC14L5O43304 696 aa7.01□□□□□ -1.29
LIMA1-213ENST00000552720 CCNYL3P0C7X3 344 aa7.01□□□□□ -1.29
LIMA1-213ENST00000552720 TBXA2RP21731 343 aa7.01□□□□□ -1.29
LIMA1-213ENST00000552720 SDHBP21912 280 aa7.01□□□□□ -1.29
LIMA1-213ENST00000552720 AHRP35869 848 aa7.01□□□□□ -1.29
LIMA1-213ENST00000552720 HSD17B2P37059 387 aa7.01□□□□□ -1.29
LIMA1-213ENST00000552720 RPS5P46782 204 aaKnown RBP7.01□□□□□ -1.29
LIMA1-213ENST00000552720 RAB25P57735 213 aa7.01□□□□□ -1.29
LIMA1-213ENST00000552720 RGS8P57771 180 aaPredicted RBP7.01□□□□□ -1.29
LIMA1-213ENST00000552720 TRA2BP62995 288 aaKnown RBP7.01□□□□□ -1.29
LIMA1-213ENST00000552720 TGM3Q08188 693 aa7.01□□□□□ -1.29
LIMA1-213ENST00000552720 KRT33BQ14525 404 aa7.01□□□□□ -1.29
LIMA1-213ENST00000552720 AGERQ15109 404 aa7.01□□□□□ -1.29
LIMA1-213ENST00000552720 NDUFA5Q16718 116 aa7.01□□□□□ -1.29
LIMA1-213ENST00000552720 TATDN3Q17R31 274 aa7.01□□□□□ -1.29
LIMA1-213ENST00000552720 EOGTQ5NDL2 527 aa7.01□□□□□ -1.29
LIMA1-213ENST00000552720 C1orf53Q5VUE5 145 aa7.01□□□□□ -1.29
LIMA1-213ENST00000552720 SLC48A1Q6P1K1 146 aa7.01□□□□□ -1.29
LIMA1-213ENST00000552720 CD200R1LQ6Q8B3 271 aa7.01□□□□□ -1.29
LIMA1-213ENST00000552720 IL20RBQ6UXL0 311 aa7.01□□□□□ -1.29
LIMA1-213ENST00000552720 TMEM64Q6YI46 380 aa7.01□□□□□ -1.29
LIMA1-213ENST00000552720 TMEM91Q6ZNR0 172 aa7.01□□□□□ -1.29
LIMA1-213ENST00000552720 RASSF6Q6ZTQ3 369 aa7.01□□□□□ -1.29
LIMA1-213ENST00000552720 C16orf62Q7Z3J2 963 aa7.01□□□□□ -1.29
LIMA1-213ENST00000552720 GDF7Q7Z4P5 450 aa7.01□□□□□ -1.29
LIMA1-213ENST00000552720 CPOQ8IVL8 374 aa7.01□□□□□ -1.29
LIMA1-213ENST00000552720 ZNF513Q8N8E2 541 aaPredicted RBP7.01□□□□□ -1.29
LIMA1-213ENST00000552720 POGLUT1Q8NBL1 392 aa7.01□□□□□ -1.29
LIMA1-213ENST00000552720 OR2L3Q8NG85 312 aa7.01□□□□□ -1.29
LIMA1-213ENST00000552720 OR51G2Q8NGK0 314 aa7.01□□□□□ -1.29
LIMA1-213ENST00000552720 NEIL3Q8TAT5 605 aa7.01□□□□□ -1.29
LIMA1-213ENST00000552720 SMG7Q92540 1137 aaKnown RBP7.01□□□□□ -1.29
LIMA1-213ENST00000552720 CDS1Q92903 461 aa7.01□□□□□ -1.29
LIMA1-213ENST00000552720 UPRTQ96BW1 309 aa7.01□□□□□ -1.29
LIMA1-213ENST00000552720 ZNF681Q96N22 645 aa7.01□□□□□ -1.29
LIMA1-213ENST00000552720 MCHR1Q99705 422 aa7.01□□□□□ -1.29
LIMA1-213ENST00000552720 MED18Q9BUE0 208 aa7.01□□□□□ -1.29
LIMA1-213ENST00000552720 TEX101Q9BY14 249 aa7.01□□□□□ -1.29
LIMA1-213ENST00000552720 PPIL3Q9H2H8 161 aaKnown RBP7.01□□□□□ -1.29
LIMA1-213ENST00000552720 GIMAP4Q9NUV9 329 aa7.01□□□□□ -1.29
LIMA1-213ENST00000552720 SLC13A4Q9UKG4 626 aa7.01□□□□□ -1.29
LIMA1-213ENST00000552720 ZFR2Q9UPR6 939 aaKnown RBP7.01□□□□□ -1.29
LIMA1-213ENST00000552720 GSTK1Q9Y2Q3 226 aa7.01□□□□□ -1.29
LIMA1-213ENST00000552720 EXOSC1Q9Y3B2 195 aaKnown RBP7.01□□□□□ -1.29
LIMA1-213ENST00000552720 MPDZO75970 2070 aa7.01□□□□□ -1.29
LIMA1-213ENST00000552720 EML5Q05BV3 1969 aa7□□□□□ -1.29
LIMA1-213ENST00000552720 NPIPA5A0A0B4J1W7 369 aa7□□□□□ -1.29
LIMA1-213ENST00000552720 TRDV1A0A1B0GX56 115 aa7□□□□□ -1.29
LIMA1-213ENST00000552720 SYNDIG1LA6NDD5 238 aa7□□□□□ -1.29
LIMA1-213ENST00000552720 OR6C70A6NIJ9 312 aa7□□□□□ -1.29
LIMA1-213ENST00000552720 NPIPA7E9PJI5 369 aa7□□□□□ -1.29
LIMA1-213ENST00000552720 EMC8O43402 210 aa7□□□□□ -1.29
LIMA1-213ENST00000552720 PROM1O43490 865 aa7□□□□□ -1.29
LIMA1-213ENST00000552720 EML2O95834 649 aa7□□□□□ -1.29
LIMA1-213ENST00000552720 ZGLP1P0C6A0 271 aa7□□□□□ -1.29
LIMA1-213ENST00000552720 NPIPA8P0DM63 369 aa7□□□□□ -1.29
LIMA1-213ENST00000552720 PRG2P13727 222 aa7□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms