RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 HOXA9P31269 272 aa15.31■□□□□ 0.04
CUX1-213ENST00000549414 PBX2P40425 430 aa15.31■□□□□ 0.04
CUX1-213ENST00000549414 GIPRP48546 466 aa15.31■□□□□ 0.04
CUX1-213ENST00000549414 BCL7AQ4VC05 210 aa15.31■□□□□ 0.04
CUX1-213ENST00000549414 C9orf50Q5SZB4 431 aa15.31■□□□□ 0.04
CUX1-213ENST00000549414 PTCRAQ6ISU1 281 aaPredicted RBP15.31■□□□□ 0.04
CUX1-213ENST00000549414 ADAMTSL4Q6UY14 1074 aa15.31■□□□□ 0.04
CUX1-213ENST00000549414 GPAT4Q86UL3 456 aa15.31■□□□□ 0.04
CUX1-213ENST00000549414 ZMYND19Q96E35 227 aaPredicted RBP15.31■□□□□ 0.04
CUX1-213ENST00000549414 OR4K3Q96R72 315 aa15.31■□□□□ 0.04
CUX1-213ENST00000549414 SCML1Q9UN30 329 aa15.31■□□□□ 0.04
CUX1-213ENST00000549414 FAM221BA6H8Z2 402 aa15.3■□□□□ 0.04
CUX1-213ENST00000549414 WASHC1A8K0Z3 465 aa15.3■□□□□ 0.04
CUX1-213ENST00000549414 SPARCP09486 303 aa15.3■□□□□ 0.04
CUX1-213ENST00000549414 SSTR4P31391 388 aa15.3■□□□□ 0.04
CUX1-213ENST00000549414 CA5AP35218 305 aa15.3■□□□□ 0.04
CUX1-213ENST00000549414 TCTN1Q2MV58 587 aa15.3■□□□□ 0.04
CUX1-213ENST00000549414 LRIF1Q5T3J3 769 aa15.3■□□□□ 0.04
CUX1-213ENST00000549414 OR2G6Q5TZ20 316 aa15.3■□□□□ 0.04
CUX1-213ENST00000549414 WASH2PQ6VEQ5 465 aa15.3■□□□□ 0.04
CUX1-213ENST00000549414 Q8N402 240 aa15.3■□□□□ 0.04
CUX1-213ENST00000549414 OR2L8Q8NGY9 312 aa15.3■□□□□ 0.04
CUX1-213ENST00000549414 ALG14Q96F25 216 aa15.3■□□□□ 0.04
CUX1-213ENST00000549414 NPIPA5E9PKD4 350 aa15.3■□□□□ 0.04
CUX1-213ENST00000549414 PRAMEF26H0Y7S4 382 aa15.3■□□□□ 0.04
CUX1-213ENST00000549414 RGS6P49758 472 aa15.3■□□□□ 0.04
CUX1-213ENST00000549414 YBX1P67809 324 aaKnown RBP15.3■□□□□ 0.04
CUX1-213ENST00000549414 ZNF91Q05481 1191 aa15.3■□□□□ 0.04
CUX1-213ENST00000549414 PAMR1Q6UXH9 720 aa15.3■□□□□ 0.04
CUX1-213ENST00000549414 TMEM150AQ86TG1 271 aa15.3■□□□□ 0.04
CUX1-213ENST00000549414 ANKRD13BQ86YJ7 626 aa15.3■□□□□ 0.04
CUX1-213ENST00000549414 OR4K17Q8NGC6 315 aa15.3■□□□□ 0.04
CUX1-213ENST00000549414 NEK7Q8TDX7 302 aa15.3■□□□□ 0.04
CUX1-213ENST00000549414 FRMD6Q96NE9 622 aa15.3■□□□□ 0.04
CUX1-213ENST00000549414 ACSS1Q9NUB1 689 aaPredicted RBP15.3■□□□□ 0.04
CUX1-213ENST00000549414 NPIPA1Q9UND3 350 aa15.3■□□□□ 0.04
CUX1-213ENST00000549414 ASPDHA6ND91 283 aa15.3■□□□□ 0.04
CUX1-213ENST00000549414 ZNF701M0R085 212 aaPredicted RBP15.3■□□□□ 0.04
CUX1-213ENST00000549414 BCL6P41182 706 aa15.3■□□□□ 0.04
CUX1-213ENST00000549414 NKX2-5P52952 324 aaPredicted RBP15.3■□□□□ 0.04
CUX1-213ENST00000549414 AP3S2P59780 193 aa15.3■□□□□ 0.04
CUX1-213ENST00000549414 PEG10Q86TG7 708 aaKnown RBP15.3■□□□□ 0.04
CUX1-213ENST00000549414 TRBV2A0A0J9YWF9 115 aa15.29■□□□□ 0.04
CUX1-213ENST00000549414 A0A1W2PQL4 384 aaPredicted RBP15.29■□□□□ 0.04
CUX1-213ENST00000549414 SLC22A31A6NKX4 558 aa15.29■□□□□ 0.04
CUX1-213ENST00000549414 GPR89AB7ZAQ6 455 aa15.29■□□□□ 0.04
CUX1-213ENST00000549414 GPR89BP0CG08 455 aa15.29■□□□□ 0.04
CUX1-213ENST00000549414 CD97P48960 835 aa15.29■□□□□ 0.04
CUX1-213ENST00000549414 ENTPD8Q5MY95 495 aa15.29■□□□□ 0.04
CUX1-213ENST00000549414 TECPR1Q7Z6L1 1165 aa15.29■□□□□ 0.04
CUX1-213ENST00000549414 OR13F1Q8NGS4 319 aa15.29■□□□□ 0.04
CUX1-213ENST00000549414 KLHL31Q9H511 634 aa15.29■□□□□ 0.04
CUX1-213ENST00000549414 EPHX3Q9H6B9 360 aa15.29■□□□□ 0.04
CUX1-213ENST00000549414 TAAR2Q9P1P5 351 aa15.29■□□□□ 0.04
CUX1-213ENST00000549414 SUSD2Q9UGT4 822 aa15.29■□□□□ 0.04
CUX1-213ENST00000549414 A0A0J9YY10 115 aa15.29■□□□□ 0.04
CUX1-213ENST00000549414 PTHP01270 115 aa15.29■□□□□ 0.04
CUX1-213ENST00000549414 SLC6A9P48067 706 aa15.29■□□□□ 0.04
CUX1-213ENST00000549414 WNT4P56705 351 aa15.29■□□□□ 0.04
CUX1-213ENST00000549414 METRNLQ641Q3 311 aa15.29■□□□□ 0.04
CUX1-213ENST00000549414 FRMD1Q8N878 549 aa15.29■□□□□ 0.04
CUX1-213ENST00000549414 OR52R1Q8NGF1 315 aa15.29■□□□□ 0.04
CUX1-213ENST00000549414 TMEM239Q8WW34 195 aa15.29■□□□□ 0.04
CUX1-213ENST00000549414 PATE1Q8WXA2 126 aa15.29■□□□□ 0.04
CUX1-213ENST00000549414 ARSGQ96EG1 525 aa15.29■□□□□ 0.04
CUX1-213ENST00000549414 HDAC8Q9BY41 377 aa15.29■□□□□ 0.04
CUX1-213ENST00000549414 FBRSQ9HAH7 460 aa15.29■□□□□ 0.04
CUX1-213ENST00000549414 PCDHGA10Q9Y5H3 936 aa15.29■□□□□ 0.04
CUX1-213ENST00000549414 EEF1E1O43324 174 aaKnown RBP15.29■□□□□ 0.04
CUX1-213ENST00000549414 HEXBP07686 556 aa15.29■□□□□ 0.04
CUX1-213ENST00000549414 MCATQ8IVS2 390 aaKnown RBP15.29■□□□□ 0.04
CUX1-213ENST00000549414 DNAJC22Q8N4W6 341 aa15.29■□□□□ 0.04
CUX1-213ENST00000549414 OR4F15Q8NGB8 312 aa15.29■□□□□ 0.04
CUX1-213ENST00000549414 OR2AJ1Q8NGZ0 328 aa15.29■□□□□ 0.04
CUX1-213ENST00000549414 RNASE11Q8TAA1 199 aaKnown RBP15.29■□□□□ 0.04
CUX1-213ENST00000549414 DDX31Q9H8H2 851 aaKnown RBP15.29■□□□□ 0.04
CUX1-213ENST00000549414 CDH10Q9Y6N8 788 aa15.29■□□□□ 0.04
CUX1-213ENST00000549414 TRAV27A0A087WT01 109 aa15.29■□□□□ 0.04
CUX1-213ENST00000549414 TCRBV5S2A0A599 114 aa15.29■□□□□ 0.04
CUX1-213ENST00000549414 CTDSP2O14595 271 aa15.29■□□□□ 0.04
CUX1-213ENST00000549414 FBLP22087 321 aaKnown RBP15.29■□□□□ 0.04
CUX1-213ENST00000549414 XCR1P46094 333 aa15.29■□□□□ 0.04
CUX1-213ENST00000549414 CXCR4P61073 352 aa15.29■□□□□ 0.04
CUX1-213ENST00000549414 MAT1AQ00266 395 aaKnown RBP15.29■□□□□ 0.04
CUX1-213ENST00000549414 GRM7Q14831 915 aa15.29■□□□□ 0.04
CUX1-213ENST00000549414 PUS10Q3MIT2 529 aaKnown RBP15.29■□□□□ 0.04
CUX1-213ENST00000549414 DCST2Q5T1A1 773 aa15.29■□□□□ 0.04
CUX1-213ENST00000549414 TMEM179BQ7Z7N9 219 aa15.29■□□□□ 0.04
CUX1-213ENST00000549414 ENTHD1Q8IYW4 607 aa15.29■□□□□ 0.04
CUX1-213ENST00000549414 OR1E3Q8WZA6 343 aa15.29■□□□□ 0.04
CUX1-213ENST00000549414 AMDHD1Q96NU7 426 aa15.29■□□□□ 0.04
CUX1-213ENST00000549414 SPNS1Q9H2V7 528 aa15.29■□□□□ 0.04
CUX1-213ENST00000549414 GPN1Q9HCN4 374 aaPredicted RBP15.29■□□□□ 0.04
CUX1-213ENST00000549414 ASIC5Q9NY37 505 aa15.29■□□□□ 0.04
CUX1-213ENST00000549414 SPHK1Q9NYA1 384 aa15.29■□□□□ 0.04
CUX1-213ENST00000549414 ZNF726A6NNF4 738 aa15.28■□□□□ 0.04
CUX1-213ENST00000549414 TLX3O43711 291 aaPredicted RBP15.28■□□□□ 0.04
CUX1-213ENST00000549414 ITGB8P26012 769 aa15.28■□□□□ 0.04
CUX1-213ENST00000549414 ALDH3B2P48448 385 aa15.28■□□□□ 0.04
CUX1-213ENST00000549414 SLC14A1Q13336 389 aa15.28■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms