RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, human

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RNF4-222	ENST00000541204	HSFX3	A0A1B0GWH4	333 aa	Predicted RBP	11.72	□□□□□ -0.53
RNF4-222	ENST00000541204	TMEM129	A0AVI4	362 aa		11.72	□□□□□ -0.53
RNF4-222	ENST00000541204	OR6C70	A6NIJ9	312 aa		11.72	□□□□□ -0.53
RNF4-222	ENST00000541204	CLEC3A	O75596	197 aa		11.72	□□□□□ -0.53
RNF4-222	ENST00000541204	RASGRP1	O95267	797 aa		11.72	□□□□□ -0.53
RNF4-222	ENST00000541204	LALBA	P00709	142 aa		11.72	□□□□□ -0.53
RNF4-222	ENST00000541204	LIMS3	P0CW19	117 aa		11.72	□□□□□ -0.53
RNF4-222	ENST00000541204	LIMS4	P0CW20	117 aa		11.72	□□□□□ -0.53
RNF4-222	ENST00000541204	PSKH1	P11801	424 aa		11.72	□□□□□ -0.53
RNF4-222	ENST00000541204	TPBG	Q13641	420 aa		11.72	□□□□□ -0.53
RNF4-222	ENST00000541204	INSL4	Q14641	139 aa		11.72	□□□□□ -0.53
RNF4-222	ENST00000541204	LASP1	Q14847	261 aa	Known RBP	11.72	□□□□□ -0.53
RNF4-222	ENST00000541204	FAM214A	Q32MH5	1076 aa		11.72	□□□□□ -0.53
RNF4-222	ENST00000541204	ENTPD8	Q5MY95	495 aa		11.72	□□□□□ -0.53
RNF4-222	ENST00000541204	LCN1P1	Q5VSP4	162 aa		11.72	□□□□□ -0.53
RNF4-222	ENST00000541204	CNIH2	Q6PI25	160 aa		11.72	□□□□□ -0.53
RNF4-222	ENST00000541204	SLC36A4	Q6YBV0	504 aa		11.72	□□□□□ -0.53
RNF4-222	ENST00000541204	DENND4A	Q7Z401	1863 aa		11.72	□□□□□ -0.53
RNF4-222	ENST00000541204		Q8N402	240 aa		11.72	□□□□□ -0.53
RNF4-222	ENST00000541204	ANKK1	Q8NFD2	765 aa		11.72	□□□□□ -0.53
RNF4-222	ENST00000541204	OR8D4	Q8NGM9	314 aa		11.72	□□□□□ -0.53
RNF4-222	ENST00000541204	PRRC1	Q96M27	445 aa		11.72	□□□□□ -0.53
RNF4-222	ENST00000541204	OR2M4	Q96R27	311 aa		11.72	□□□□□ -0.53
RNF4-222	ENST00000541204	S1PR5	Q9H228	398 aa		11.72	□□□□□ -0.53
RNF4-222	ENST00000541204	FGF20	Q9NP95	211 aa	Predicted RBP	11.72	□□□□□ -0.53
RNF4-222	ENST00000541204	SLC35C2	Q9NQQ7	365 aa		11.72	□□□□□ -0.53
RNF4-222	ENST00000541204	GSTK1	Q9Y2Q3	226 aa		11.72	□□□□□ -0.53
RNF4-222	ENST00000541204		A0A087WUU8	490 aa		11.71	□□□□□ -0.53
RNF4-222	ENST00000541204	FRS3	O43559	492 aa		11.71	□□□□□ -0.53
RNF4-222	ENST00000541204	HIST1H1T	P22492	207 aa	Predicted RBP	11.71	□□□□□ -0.53
RNF4-222	ENST00000541204	GABRA5	P31644	462 aa		11.71	□□□□□ -0.53
RNF4-222	ENST00000541204	MLLT3	P42568	568 aa	Predicted RBP	11.71	□□□□□ -0.53
RNF4-222	ENST00000541204	FUT5	Q11128	374 aa		11.71	□□□□□ -0.53
RNF4-222	ENST00000541204	TATDN3	Q17R31	274 aa		11.71	□□□□□ -0.53
RNF4-222	ENST00000541204	YIF1B	Q5BJH7	314 aa		11.71	□□□□□ -0.53
RNF4-222	ENST00000541204	TJAP1	Q5JTD0	557 aa		11.71	□□□□□ -0.53
RNF4-222	ENST00000541204	SLC27A4	Q6P1M0	643 aa		11.71	□□□□□ -0.53
RNF4-222	ENST00000541204	PLET1	Q6UQ28	207 aa		11.71	□□□□□ -0.53
RNF4-222	ENST00000541204	TMEM107	Q6UX40	140 aa		11.71	□□□□□ -0.53
RNF4-222	ENST00000541204	PRICKLE2	Q7Z3G6	844 aa		11.71	□□□□□ -0.53
RNF4-222	ENST00000541204	NLGN4Y	Q8NFZ3	816 aa	Predicted RBP	11.71	□□□□□ -0.53
RNF4-222	ENST00000541204	OR10G6	Q8NH81	332 aa		11.71	□□□□□ -0.53
RNF4-222	ENST00000541204	TEX47	Q8TBZ9	253 aa		11.71	□□□□□ -0.53
RNF4-222	ENST00000541204	DOK4	Q8TEW6	326 aa		11.71	□□□□□ -0.53
RNF4-222	ENST00000541204	TMED9	Q9BVK6	235 aa		11.71	□□□□□ -0.53
RNF4-222	ENST00000541204	HDHD5	Q9BXW7	423 aa		11.71	□□□□□ -0.53
RNF4-222	ENST00000541204	TBC1D17	Q9HA65	648 aa		11.71	□□□□□ -0.53
RNF4-222	ENST00000541204	ACSS1	Q9NUB1	689 aa	Predicted RBP	11.71	□□□□□ -0.53
RNF4-222	ENST00000541204	ZBTB32	Q9Y2Y4	487 aa	Predicted RBP	11.71	□□□□□ -0.53
RNF4-222	ENST00000541204	PIAS3	Q9Y6X2	628 aa		11.71	□□□□□ -0.53
RNF4-222	ENST00000541204	SNRNP200	O75643	2136 aa	Known RBP	11.71	□□□□□ -0.53
RNF4-222	ENST00000541204	MYO10	Q9HD67	2058 aa		11.71	□□□□□ -0.54
RNF4-222	ENST00000541204	CH25H	O95992	272 aa		11.71	□□□□□ -0.54
RNF4-222	ENST00000541204	PRKCA	P17252	672 aa		11.71	□□□□□ -0.54
RNF4-222	ENST00000541204	BTN3A2	P78410	334 aa		11.71	□□□□□ -0.54
RNF4-222	ENST00000541204	TRIQK	Q629K1	86 aa		11.71	□□□□□ -0.54
RNF4-222	ENST00000541204	AMIGO1	Q86WK6	493 aa		11.71	□□□□□ -0.54
RNF4-222	ENST00000541204	SFTPA2	Q8IWL1	248 aa		11.71	□□□□□ -0.54
RNF4-222	ENST00000541204	C19orf18	Q8NEA5	215 aa		11.71	□□□□□ -0.54
RNF4-222	ENST00000541204	KIAA1143	Q96AT1	154 aa	Predicted RBP	11.71	□□□□□ -0.54
RNF4-222	ENST00000541204	C16orf58	Q96GQ5	468 aa		11.71	□□□□□ -0.54
RNF4-222	ENST00000541204	MRGPRX1	Q96LB2	322 aa		11.71	□□□□□ -0.54
RNF4-222	ENST00000541204	GABRG3	Q99928	467 aa		11.71	□□□□□ -0.54
RNF4-222	ENST00000541204	ARHGAP9	Q9BRR9	750 aa		11.71	□□□□□ -0.54
RNF4-222	ENST00000541204	SLA2	Q9H6Q3	261 aa		11.71	□□□□□ -0.54
RNF4-222	ENST00000541204	B3GAT2	Q9NPZ5	323 aa		11.71	□□□□□ -0.54
RNF4-222	ENST00000541204	MRPS18A	Q9NVS2	196 aa	Known RBP	11.71	□□□□□ -0.54
RNF4-222	ENST00000541204	APOBEC3B	Q9UH17	382 aa	Known RBP	11.71	□□□□□ -0.54
RNF4-222	ENST00000541204	CLCA3P	Q9Y6N3	262 aa		11.71	□□□□□ -0.54
RNF4-222	ENST00000541204	SCN3A	Q9NY46	2000 aa		11.7	□□□□□ -0.54
RNF4-222	ENST00000541204	NDUFB5	O43674	189 aa		11.7	□□□□□ -0.54
RNF4-222	ENST00000541204	AIFM1	O95831	613 aa		11.7	□□□□□ -0.54
RNF4-222	ENST00000541204	ASGR2	P07307	311 aa		11.7	□□□□□ -0.54
RNF4-222	ENST00000541204	MAP2K3	P46734	347 aa		11.7	□□□□□ -0.54
RNF4-222	ENST00000541204	PPP3R1	P63098	170 aa		11.7	□□□□□ -0.54
RNF4-222	ENST00000541204	GALK2	Q01415	458 aa		11.7	□□□□□ -0.54
RNF4-222	ENST00000541204	ADAM15	Q13444	863 aa		11.7	□□□□□ -0.54
RNF4-222	ENST00000541204	IL18	Q14116	193 aa		11.7	□□□□□ -0.54
RNF4-222	ENST00000541204	MINDY4	Q4G0A6	757 aa		11.7	□□□□□ -0.54
RNF4-222	ENST00000541204	ZNF542P	Q5EBM4	170 aa		11.7	□□□□□ -0.54
RNF4-222	ENST00000541204	ABHD17C	Q6PCB6	329 aa		11.7	□□□□□ -0.54
RNF4-222	ENST00000541204	TMEM184A	Q6ZMB5	413 aa		11.7	□□□□□ -0.54
RNF4-222	ENST00000541204	YIPF7	Q8N8F6	280 aa		11.7	□□□□□ -0.54
RNF4-222	ENST00000541204	OR4F15	Q8NGB8	312 aa		11.7	□□□□□ -0.54
RNF4-222	ENST00000541204	ZCCHC10	Q8TBK6	192 aa		11.7	□□□□□ -0.54
RNF4-222	ENST00000541204	COL26A1	Q96A83	441 aa		11.7	□□□□□ -0.54
RNF4-222	ENST00000541204	CNRIP1	Q96F85	164 aa	Predicted RBP	11.7	□□□□□ -0.54
RNF4-222	ENST00000541204	FAM46A	Q96IP4	442 aa	Known RBP	11.7	□□□□□ -0.54
RNF4-222	ENST00000541204	FAIM2	Q9BWQ8	316 aa		11.7	□□□□□ -0.54
RNF4-222	ENST00000541204	PPP1R3E	Q9H7J1	279 aa		11.7	□□□□□ -0.54
RNF4-222	ENST00000541204	NT5DC2	Q9H857	520 aa		11.7	□□□□□ -0.54
RNF4-222	ENST00000541204	RPRD1B	Q9NQG5	326 aa	Known RBP	11.7	□□□□□ -0.54
RNF4-222	ENST00000541204	PRDM7	Q9NQW5	492 aa		11.7	□□□□□ -0.54
RNF4-222	ENST00000541204	CLCA2	Q9UQC9	943 aa		11.7	□□□□□ -0.54
RNF4-222	ENST00000541204	KCNE3	Q9Y6H6	103 aa		11.7	□□□□□ -0.54
RNF4-222	ENST00000541204	SHISA3	A0PJX4	238 aa		11.7	□□□□□ -0.54
RNF4-222	ENST00000541204	FAM170B	A6NMN3	283 aa		11.7	□□□□□ -0.54
RNF4-222	ENST00000541204	MAN2B1	O00754	1011 aa		11.7	□□□□□ -0.54
RNF4-222	ENST00000541204	UBXN7	O94888	489 aa		11.7	□□□□□ -0.54
RNF4-222	ENST00000541204	CCNYL3	P0C7X3	344 aa		11.7	□□□□□ -0.54

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