RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 FAM170BA6NMN3 283 aa12.84□□□□□ -0.35
RTN3-210ENST00000540798 J3QRK9 145 aa12.84□□□□□ -0.35
RTN3-210ENST00000540798 KIAA0513O60268 411 aa12.84□□□□□ -0.35
RTN3-210ENST00000540798 ZNF217O75362 1048 aa12.84□□□□□ -0.35
RTN3-210ENST00000540798 CCNYL3P0C7X3 344 aa12.84□□□□□ -0.35
RTN3-210ENST00000540798 SMSP52788 366 aa12.84□□□□□ -0.35
RTN3-210ENST00000540798 GAS1P54826 345 aa12.84□□□□□ -0.35
RTN3-210ENST00000540798 ID2Q02363 134 aa12.84□□□□□ -0.35
RTN3-210ENST00000540798 SYT14P1Q58G82 188 aa12.84□□□□□ -0.35
RTN3-210ENST00000540798 USP43Q70EL4 1123 aa12.84□□□□□ -0.35
RTN3-210ENST00000540798 GDF7Q7Z4P5 450 aa12.84□□□□□ -0.35
RTN3-210ENST00000540798 ZNF619Q8N2I2 560 aa12.84□□□□□ -0.35
RTN3-210ENST00000540798 C19orf47Q8N9M1 422 aaKnown RBP12.84□□□□□ -0.35
RTN3-210ENST00000540798 POGLUT1Q8NBL1 392 aa12.84□□□□□ -0.35
RTN3-210ENST00000540798 OR8D4Q8NGM9 314 aa12.84□□□□□ -0.35
RTN3-210ENST00000540798 HMG20AQ9NP66 347 aa12.84□□□□□ -0.35
RTN3-210ENST00000540798 A3GALT2U3KPV4 340 aa12.84□□□□□ -0.35
RTN3-210ENST00000540798 A0A1W2PR77 199 aa12.83□□□□□ -0.36
RTN3-210ENST00000540798 SULT1C4O75897 302 aa12.83□□□□□ -0.36
RTN3-210ENST00000540798 WNT1P04628 370 aa12.83□□□□□ -0.36
RTN3-210ENST00000540798 CTSBP07858 339 aa12.83□□□□□ -0.36
RTN3-210ENST00000540798 ENDOUP21128 410 aaKnown RBP12.83□□□□□ -0.36
RTN3-210ENST00000540798 FPR3P25089 353 aa12.83□□□□□ -0.36
RTN3-210ENST00000540798 AVPR1BP47901 424 aa12.83□□□□□ -0.36
RTN3-210ENST00000540798 FASLGP48023 281 aa12.83□□□□□ -0.36
RTN3-210ENST00000540798 RGS8P57771 180 aaPredicted RBP12.83□□□□□ -0.36
RTN3-210ENST00000540798 CAMK2BQ13554 666 aa12.83□□□□□ -0.36
RTN3-210ENST00000540798 TDGQ13569 410 aa12.83□□□□□ -0.36
RTN3-210ENST00000540798 EIPR1Q53HC9 387 aa12.83□□□□□ -0.36
RTN3-210ENST00000540798 DCST2Q5T1A1 773 aa12.83□□□□□ -0.36
RTN3-210ENST00000540798 MGLLQ99685 303 aa12.83□□□□□ -0.36
RTN3-210ENST00000540798 TSSK6Q9BXA6 273 aa12.83□□□□□ -0.36
RTN3-210ENST00000540798 TVP23BQ9NYZ1 205 aa12.83□□□□□ -0.36
RTN3-210ENST00000540798 ERGIC3Q9Y282 383 aa12.83□□□□□ -0.36
RTN3-210ENST00000540798 TDRD6O60522 2096 aaKnown RBP12.83□□□□□ -0.36
RTN3-210ENST00000540798 CSF2P04141 144 aa12.83□□□□□ -0.36
RTN3-210ENST00000540798 GUSBP08236 651 aa12.83□□□□□ -0.36
RTN3-210ENST00000540798 ALOX5P09917 674 aa12.83□□□□□ -0.36
RTN3-210ENST00000540798 CT62P0C5K7 136 aa12.83□□□□□ -0.36
RTN3-210ENST00000540798 RCVRNP35243 200 aa12.83□□□□□ -0.36
RTN3-210ENST00000540798 LARS2Q15031 903 aaKnown RBP12.83□□□□□ -0.36
RTN3-210ENST00000540798 MBOAT2Q6ZWT7 520 aa12.83□□□□□ -0.36
RTN3-210ENST00000540798 NKAIN4Q8IVV8 208 aa12.83□□□□□ -0.36
RTN3-210ENST00000540798 FAM160A2Q8N612 972 aaPredicted RBP12.83□□□□□ -0.36
RTN3-210ENST00000540798 TSTD1Q8NFU3 115 aa12.83□□□□□ -0.36
RTN3-210ENST00000540798 WDR36Q8NI36 951 aaKnown RBP12.83□□□□□ -0.36
RTN3-210ENST00000540798 SLC41A3Q96GZ6 507 aa12.83□□□□□ -0.36
RTN3-210ENST00000540798 ZNF582Q96NG8 517 aaPredicted RBP12.83□□□□□ -0.36
RTN3-210ENST00000540798 OPALINQ96PE5 141 aa12.83□□□□□ -0.36
RTN3-210ENST00000540798 MCHR1Q99705 422 aa12.83□□□□□ -0.36
RTN3-210ENST00000540798 PRO3102Q9H379 93 aa12.83□□□□□ -0.36
RTN3-210ENST00000540798 EGLN3Q9H6Z9 239 aa12.83□□□□□ -0.36
RTN3-210ENST00000540798 KCNE5Q9UJ90 142 aa12.83□□□□□ -0.36
RTN3-210ENST00000540798 NTNG1Q9Y2I2 539 aa12.83□□□□□ -0.36
RTN3-210ENST00000540798 METTL15A6NJ78 407 aa12.82□□□□□ -0.36
RTN3-210ENST00000540798 SGK494L7N484 410 aa12.82□□□□□ -0.36
RTN3-210ENST00000540798 AP3D1O14617 1153 aa12.82□□□□□ -0.36
RTN3-210ENST00000540798 UBXN7O94888 489 aa12.82□□□□□ -0.36
RTN3-210ENST00000540798 AK1P00568 194 aa12.82□□□□□ -0.36
RTN3-210ENST00000540798 SCG5P05408 212 aa12.82□□□□□ -0.36
RTN3-210ENST00000540798 DBIP07108 87 aaKnown RBP12.82□□□□□ -0.36
RTN3-210ENST00000540798 SLC35E2P0CK97 266 aa12.82□□□□□ -0.36
RTN3-210ENST00000540798 NR1D2Q14995 579 aa12.82□□□□□ -0.36
RTN3-210ENST00000540798 SSX1Q16384 188 aa12.82□□□□□ -0.36
RTN3-210ENST00000540798 MAPK14Q16539 360 aa12.82□□□□□ -0.36
RTN3-210ENST00000540798 CLPPQ16740 277 aaPredicted RBP12.82□□□□□ -0.36
RTN3-210ENST00000540798 BCDIN3DQ7Z5W3 292 aaKnown RBP12.82□□□□□ -0.36
RTN3-210ENST00000540798 ADCK1Q86TW2 530 aa12.82□□□□□ -0.36
RTN3-210ENST00000540798 NANOGP1Q8N7R0 232 aa12.82□□□□□ -0.36
RTN3-210ENST00000540798 TMEM163Q8TC26 289 aa12.82□□□□□ -0.36
RTN3-210ENST00000540798 OR51E2Q9H255 320 aa12.82□□□□□ -0.36
RTN3-210ENST00000540798 POLE3Q9NRF9 147 aa12.82□□□□□ -0.36
RTN3-210ENST00000540798 STARD5Q9NSY2 213 aa12.82□□□□□ -0.36
RTN3-210ENST00000540798 CCDC59Q9P031 241 aaKnown RBP12.82□□□□□ -0.36
RTN3-210ENST00000540798 DIMT1Q9UNQ2 313 aaKnown RBP12.82□□□□□ -0.36
RTN3-210ENST00000540798 STX11O75558 287 aa12.82□□□□□ -0.36
RTN3-210ENST00000540798 LYPD3O95274 346 aa12.82□□□□□ -0.36
RTN3-210ENST00000540798 NTN1O95631 604 aa12.82□□□□□ -0.36
RTN3-210ENST00000540798 NME1P15531 152 aaKnown RBP12.82□□□□□ -0.36
RTN3-210ENST00000540798 TYRP1P17643 537 aa12.82□□□□□ -0.36
RTN3-210ENST00000540798 STAT5AP42229 794 aa12.82□□□□□ -0.36
RTN3-210ENST00000540798 CLK1P49759 484 aaKnown RBP12.82□□□□□ -0.36
RTN3-210ENST00000540798 HOXC5Q00444 222 aa12.82□□□□□ -0.36
RTN3-210ENST00000540798 ZNF730Q6ZMV8 503 aa12.82□□□□□ -0.36
RTN3-210ENST00000540798 PLEKHM3Q6ZWE6 761 aa12.82□□□□□ -0.36
RTN3-210ENST00000540798 C17orf82Q86X59 251 aaPredicted RBP12.82□□□□□ -0.36
RTN3-210ENST00000540798 PIGXQ8TBF5 258 aa12.82□□□□□ -0.36
RTN3-210ENST00000540798 CHPT1Q8WUD6 406 aa12.82□□□□□ -0.36
RTN3-210ENST00000540798 ZNF285Q96NJ3 590 aa12.82□□□□□ -0.36
RTN3-210ENST00000540798 DSN1Q9H410 356 aa12.82□□□□□ -0.36
RTN3-210ENST00000540798 LMAN1LQ9HAT1 526 aa12.82□□□□□ -0.36
RTN3-210ENST00000540798 B4DGG1 531 aa12.82□□□□□ -0.36
RTN3-210ENST00000540798 DSCR3O14972 297 aa12.82□□□□□ -0.36
RTN3-210ENST00000540798 TLX2O43763 284 aaPredicted RBP12.82□□□□□ -0.36
RTN3-210ENST00000540798 CSO75390 466 aaKnown RBP12.82□□□□□ -0.36
RTN3-210ENST00000540798 CBX7O95931 251 aa12.82□□□□□ -0.36
RTN3-210ENST00000540798 BMP4P12644 408 aa12.82□□□□□ -0.36
RTN3-210ENST00000540798 S1PR1P21453 382 aa12.82□□□□□ -0.36
RTN3-210ENST00000540798 NT5EP21589 574 aa12.82□□□□□ -0.36
RTN3-210ENST00000540798 CD27P26842 260 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms