RNA–Protein interactions for RNA: ENST00000525241.1

CD44-215, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 440 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-215ENST00000525241 L3MBTL1Q9Y468 752 aa3.03□□□□□ -1.92
CD44-215ENST00000525241 FLVCR1Q9Y5Y0 555 aa3.03□□□□□ -1.92
CD44-215ENST00000525241 LGALS8O00214 317 aa3.02□□□□□ -1.93
CD44-215ENST00000525241 TGFAP01135 160 aa3.02□□□□□ -1.93
CD44-215ENST00000525241 HSPB1P04792 205 aaKnown RBP3.02□□□□□ -1.93
CD44-215ENST00000525241 RGS19P49795 217 aa3.02□□□□□ -1.93
CD44-215ENST00000525241 EMDP50402 254 aa3.02□□□□□ -1.93
CD44-215ENST00000525241 PLOD1Q02809 727 aaPredicted RBP3.02□□□□□ -1.93
CD44-215ENST00000525241 OVGP1Q12889 678 aa3.02□□□□□ -1.93
CD44-215ENST00000525241 DPYSL3Q14195 570 aa3.02□□□□□ -1.93
CD44-215ENST00000525241 CDKN3Q16667 212 aa3.02□□□□□ -1.93
CD44-215ENST00000525241 CADM2Q8N3J6 435 aa3.02□□□□□ -1.93
CD44-215ENST00000525241 MRPL43Q8N983 215 aaKnown RBP3.02□□□□□ -1.93
CD44-215ENST00000525241 LINC01006Q8NI28 216 aa3.02□□□□□ -1.93
CD44-215ENST00000525241 ARNTL2Q8WYA1 636 aa3.02□□□□□ -1.93
CD44-215ENST00000525241 MRPL38Q96DV4 380 aaKnown RBP3.02□□□□□ -1.93
CD44-215ENST00000525241 SLC25A38Q96DW6 304 aa3.02□□□□□ -1.93
CD44-215ENST00000525241 CYYR1Q96J86 154 aa3.02□□□□□ -1.93
CD44-215ENST00000525241 MAGEB18Q96M61 343 aa3.02□□□□□ -1.93
CD44-215ENST00000525241 TBC1D10AQ9BXI6 508 aa3.02□□□□□ -1.93
CD44-215ENST00000525241 GLT8D2Q9H1C3 349 aa3.02□□□□□ -1.93
CD44-215ENST00000525241 GPN2Q9H9Y4 310 aaPredicted RBP3.02□□□□□ -1.93
CD44-215ENST00000525241 SOHLH2Q9NX45 425 aa3.02□□□□□ -1.93
CD44-215ENST00000525241 NINJ2Q9NZG7 142 aa3.02□□□□□ -1.93
CD44-215ENST00000525241 PDE10AQ9Y233 779 aa3.02□□□□□ -1.93
CD44-215ENST00000525241 ABCC4O15439 1325 aa3.01□□□□□ -1.93
CD44-215ENST00000525241 ZSCAN5BA6NJL1 495 aa3.01□□□□□ -1.93
CD44-215ENST00000525241 PDXKO00764 312 aa3.01□□□□□ -1.93
CD44-215ENST00000525241 SEC22BO75396 215 aa3.01□□□□□ -1.93
CD44-215ENST00000525241 IGHV3-23P01764 117 aa3.01□□□□□ -1.93
CD44-215ENST00000525241 ANXA4P09525 319 aaPredicted RBP3.01□□□□□ -1.93
CD44-215ENST00000525241 NF2P35240 595 aa3.01□□□□□ -1.93
CD44-215ENST00000525241 RPL4P36578 427 aaKnown RBP3.01□□□□□ -1.93
CD44-215ENST00000525241 RABIFP47224 123 aa3.01□□□□□ -1.93
CD44-215ENST00000525241 ATXN3P54252 364 aaPredicted RBP3.01□□□□□ -1.93
CD44-215ENST00000525241 STX17P56962 302 aa3.01□□□□□ -1.93
CD44-215ENST00000525241 KCNJ11Q14654 390 aa3.01□□□□□ -1.93
CD44-215ENST00000525241 LDLRAP1Q5SW96 308 aa3.01□□□□□ -1.93
CD44-215ENST00000525241 FAM120AOSQ5T036 256 aa3.01□□□□□ -1.93
CD44-215ENST00000525241 BPIFB2Q8N4F0 458 aa3.01□□□□□ -1.93
CD44-215ENST00000525241 FCGR1BQ92637 280 aa3.01□□□□□ -1.93
CD44-215ENST00000525241 CCDC47Q96A33 483 aaKnown RBP3.01□□□□□ -1.93
CD44-215ENST00000525241 C14orf79Q96F83 325 aa3.01□□□□□ -1.93
CD44-215ENST00000525241 RPAP3Q9H6T3 665 aaPredicted RBP3.01□□□□□ -1.93
CD44-215ENST00000525241 ROPN1Q9HAT0 212 aaPredicted RBP3.01□□□□□ -1.93
CD44-215ENST00000525241 PNO1Q9NRX1 252 aaKnown RBP3.01□□□□□ -1.93
CD44-215ENST00000525241 GALPQ9UBC7 116 aa3.01□□□□□ -1.93
CD44-215ENST00000525241 MTF2Q9Y483 593 aaPredicted RBP3.01□□□□□ -1.93
CD44-215ENST00000525241 CUX2O14529 1486 aa3.01□□□□□ -1.93
CD44-215ENST00000525241 TNRQ92752 1358 aa3□□□□□ -1.93
CD44-215ENST00000525241 RNF103-CHMP3A0A140T963 221 aa3□□□□□ -1.93
CD44-215ENST00000525241 B4DXG7 233 aa3□□□□□ -1.93
CD44-215ENST00000525241 E9PLD3 99 aa3□□□□□ -1.93
CD44-215ENST00000525241 OR7A17O14581 309 aa3□□□□□ -1.93
CD44-215ENST00000525241 CASKO14936 926 aa3□□□□□ -1.93
CD44-215ENST00000525241 APBB3O95704 486 aa3□□□□□ -1.93
CD44-215ENST00000525241 PGK1P00558 417 aa3□□□□□ -1.93
CD44-215ENST00000525241 GSTT2P0CG29 244 aa3□□□□□ -1.93
CD44-215ENST00000525241 GSTT2BP0CG30 244 aa3□□□□□ -1.93
CD44-215ENST00000525241 CCDC166P0CW27 439 aa3□□□□□ -1.93
CD44-215ENST00000525241 ELK1P19419 428 aa3□□□□□ -1.93
CD44-215ENST00000525241 FUT1P19526 365 aa3□□□□□ -1.93
CD44-215ENST00000525241 DRD3P35462 400 aa3□□□□□ -1.93
CD44-215ENST00000525241 EFNA3P52797 238 aa3□□□□□ -1.93
CD44-215ENST00000525241 RPL32P62910 135 aaKnown RBP3□□□□□ -1.93
CD44-215ENST00000525241 SPP2Q13103 211 aa3□□□□□ -1.93
CD44-215ENST00000525241 ZNF154Q13106 437 aa3□□□□□ -1.93
CD44-215ENST00000525241 EXOSC2Q13868 293 aaKnown RBP3□□□□□ -1.93
CD44-215ENST00000525241 DPYSQ14117 519 aa3□□□□□ -1.93
CD44-215ENST00000525241 KARSQ15046 597 aaKnown RBP3□□□□□ -1.93
CD44-215ENST00000525241 TMEM52BQ4KMG9 183 aa3□□□□□ -1.93
CD44-215ENST00000525241 TEX44Q53QW1 395 aa3□□□□□ -1.93
CD44-215ENST00000525241 TMEM184AQ6ZMB5 413 aa3□□□□□ -1.93
CD44-215ENST00000525241 LPCAT2Q7L5N7 544 aa3□□□□□ -1.93
CD44-215ENST00000525241 MOB1BQ7L9L4 216 aa3□□□□□ -1.93
CD44-215ENST00000525241 SLC34A3Q8N130 599 aa3□□□□□ -1.93
CD44-215ENST00000525241 HDDC3Q8N4P3 179 aa3□□□□□ -1.93
CD44-215ENST00000525241 ANKRD20A12PQ8NF67 263 aa3□□□□□ -1.93
CD44-215ENST00000525241 TMEM80Q96HE8 168 aa3□□□□□ -1.93
CD44-215ENST00000525241 ELMO2Q96JJ3 720 aa3□□□□□ -1.93
CD44-215ENST00000525241 TECTBQ96PL2 329 aa3□□□□□ -1.93
CD44-215ENST00000525241 TMEM121Q9BTD3 319 aa3□□□□□ -1.93
CD44-215ENST00000525241 NMUR2Q9GZQ4 415 aa3□□□□□ -1.93
CD44-215ENST00000525241 COMMD4Q9H0A8 199 aa3□□□□□ -1.93
CD44-215ENST00000525241 RAB17Q9H0T7 212 aa3□□□□□ -1.93
CD44-215ENST00000525241 EIF3LQ9Y262 564 aaKnown RBP3□□□□□ -1.93
CD44-215ENST00000525241 GMPPBQ9Y5P6 360 aa3□□□□□ -1.93
CD44-215ENST00000525241 PARD3Q8TEW0 1356 aa3□□□□□ -1.93
CD44-215ENST00000525241 A0A1W2PNU3 283 aaPredicted RBP2.99□□□□□ -1.93
CD44-215ENST00000525241 SAGE2PA6NJ88 616 aa2.99□□□□□ -1.93
CD44-215ENST00000525241 K7ENP7 123 aa2.99□□□□□ -1.93
CD44-215ENST00000525241 WWP2O00308 870 aa2.99□□□□□ -1.93
CD44-215ENST00000525241 ZNF254O75437 659 aa2.99□□□□□ -1.93
CD44-215ENST00000525241 SCRG1O75711 98 aa2.99□□□□□ -1.93
CD44-215ENST00000525241 KRT6AP02538 564 aa2.99□□□□□ -1.93
CD44-215ENST00000525241 KRT6BP04259 564 aa2.99□□□□□ -1.93
CD44-215ENST00000525241 CD55P08174 381 aa2.99□□□□□ -1.93
CD44-215ENST00000525241 CD1EP15812 388 aa2.99□□□□□ -1.93
CD44-215ENST00000525241 XRCC1P18887 633 aaPredicted RBP2.99□□□□□ -1.93
CD44-215ENST00000525241 PSMB1P20618 241 aaKnown RBP2.99□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms