RNA–Protein interactions for RNA: ENST00000525013.1

CAPN1-203, Transcript of calpain 1, humanhuman

TSL 2

Gene CAPN1, Length 643 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-203ENST00000525013 PKNOX2Q96KN3 472 aa16.84■□□□□ 0.29
CAPN1-203ENST00000525013 C3orf30Q96M34 536 aa16.84■□□□□ 0.29
CAPN1-203ENST00000525013 C1orf50Q9BV19 199 aa16.84■□□□□ 0.29
CAPN1-203ENST00000525013 ACSS1Q9NUB1 689 aaPredicted RBP16.84■□□□□ 0.29
CAPN1-203ENST00000525013 FAM120CQ9NX05 1096 aaKnown RBP16.84■□□□□ 0.29
CAPN1-203ENST00000525013 MED11Q9P086 117 aa16.84■□□□□ 0.29
CAPN1-203ENST00000525013 ZNF629Q9UEG4 869 aaPredicted RBP16.84■□□□□ 0.29
CAPN1-203ENST00000525013 ITGB1BP2Q9UKP3 347 aa16.84■□□□□ 0.29
CAPN1-203ENST00000525013 CSMD2Q7Z408 3487 aa16.83■□□□□ 0.29
CAPN1-203ENST00000525013 MBD3L4A6NDZ8 208 aaPredicted RBP16.83■□□□□ 0.28
CAPN1-203ENST00000525013 MBD3L3A6NE82 208 aaPredicted RBP16.83■□□□□ 0.28
CAPN1-203ENST00000525013 MBD3L5A6NJ08 208 aaPredicted RBP16.83■□□□□ 0.28
CAPN1-203ENST00000525013 ZIC3O60481 467 aa16.83■□□□□ 0.28
CAPN1-203ENST00000525013 UTS2O95399 124 aa16.83■□□□□ 0.28
CAPN1-203ENST00000525013 HSPA4LO95757 839 aa16.83■□□□□ 0.28
CAPN1-203ENST00000525013 SERPINB4P48594 390 aa16.83■□□□□ 0.28
CAPN1-203ENST00000525013 ASCL1P50553 236 aa16.83■□□□□ 0.28
CAPN1-203ENST00000525013 AGFG1P52594 562 aaKnown RBP16.83■□□□□ 0.28
CAPN1-203ENST00000525013 DSCR4P56555 118 aaPredicted RBP16.83■□□□□ 0.28
CAPN1-203ENST00000525013 XKR7Q5GH72 579 aa16.83■□□□□ 0.28
CAPN1-203ENST00000525013 LRIG3Q6UXM1 1119 aa16.83■□□□□ 0.28
CAPN1-203ENST00000525013 MARCH3Q86UD3 253 aa16.83■□□□□ 0.28
CAPN1-203ENST00000525013 EXOC3L1Q86VI1 746 aa16.83■□□□□ 0.28
CAPN1-203ENST00000525013 TMEM200AQ86VY9 491 aa16.83■□□□□ 0.28
CAPN1-203ENST00000525013 C9orf106Q8NAJ2 232 aa16.83■□□□□ 0.28
CAPN1-203ENST00000525013 OR7A2PQ8NGA2 310 aa16.83■□□□□ 0.28
CAPN1-203ENST00000525013 MBD3L2Q8NHZ7 208 aaPredicted RBP16.83■□□□□ 0.28
CAPN1-203ENST00000525013 FBXO30Q8TB52 745 aa16.83■□□□□ 0.28
CAPN1-203ENST00000525013 DUSP19Q8WTR2 217 aa16.83■□□□□ 0.28
CAPN1-203ENST00000525013 TBL1XR1Q9BZK7 514 aa16.83■□□□□ 0.28
CAPN1-203ENST00000525013 MRPS18CQ9Y3D5 142 aaKnown RBP16.83■□□□□ 0.28
CAPN1-203ENST00000525013 L3MBTL1Q9Y468 752 aa16.83■□□□□ 0.28
CAPN1-203ENST00000525013 B4DXG7 233 aa16.82■□□□□ 0.28
CAPN1-203ENST00000525013 SYT5O00445 386 aa16.82■□□□□ 0.28
CAPN1-203ENST00000525013 SCAMP2O15127 329 aaKnown RBP16.82■□□□□ 0.28
CAPN1-203ENST00000525013 EMC8O43402 210 aa16.82■□□□□ 0.28
CAPN1-203ENST00000525013 ZWINTO95229 277 aa16.82■□□□□ 0.28
CAPN1-203ENST00000525013 HK1P19367 917 aa16.82■□□□□ 0.28
CAPN1-203ENST00000525013 CTSSP25774 331 aa16.82■□□□□ 0.28
CAPN1-203ENST00000525013 OPRM1P35372 400 aa16.82■□□□□ 0.28
CAPN1-203ENST00000525013 RPL3P39023 403 aaKnown RBP16.82■□□□□ 0.28
CAPN1-203ENST00000525013 FRKP42685 505 aaPredicted RBP16.82■□□□□ 0.28
CAPN1-203ENST00000525013 ETV4P43268 484 aa16.82■□□□□ 0.28
CAPN1-203ENST00000525013 LHX2P50458 406 aa16.82■□□□□ 0.28
CAPN1-203ENST00000525013 PTGR1Q14914 329 aa16.82■□□□□ 0.28
CAPN1-203ENST00000525013 C6orf136Q5SQH8 315 aa16.82■□□□□ 0.28
CAPN1-203ENST00000525013 RAET1LQ5VY80 246 aa16.82■□□□□ 0.28
CAPN1-203ENST00000525013 GALNT10Q86SR1 603 aa16.82■□□□□ 0.28
CAPN1-203ENST00000525013 FADS6Q8N9I5 356 aa16.82■□□□□ 0.28
CAPN1-203ENST00000525013 CDRT4Q8N9R6 151 aa16.82■□□□□ 0.28
CAPN1-203ENST00000525013 FNDC5Q8NAU1 212 aa16.82■□□□□ 0.28
CAPN1-203ENST00000525013 OR2M3Q8NG83 312 aa16.82■□□□□ 0.28
CAPN1-203ENST00000525013 TUBGCP3Q96CW5 907 aa16.82■□□□□ 0.28
CAPN1-203ENST00000525013 MS4A4EQ96PG1 132 aa16.82■□□□□ 0.28
CAPN1-203ENST00000525013 PTGES2Q9H7Z7 377 aa16.82■□□□□ 0.28
CAPN1-203ENST00000525013 ATP6V1HQ9UI12 483 aa16.82■□□□□ 0.28
CAPN1-203ENST00000525013 CLCA1A8K7I4 914 aa16.81■□□□□ 0.28
CAPN1-203ENST00000525013 EEF1E1-BLOC1S5C9J1V9 151 aa16.81■□□□□ 0.28
CAPN1-203ENST00000525013 EEF1E1O43324 174 aaKnown RBP16.81■□□□□ 0.28
CAPN1-203ENST00000525013 LYPLA1O75608 230 aaPredicted RBP16.81■□□□□ 0.28
CAPN1-203ENST00000525013 NKX2-2O95096 273 aa16.81■□□□□ 0.28
CAPN1-203ENST00000525013 IGKV1D-16P01601 117 aa16.81■□□□□ 0.28
CAPN1-203ENST00000525013 TMIGD3P0DMS9 266 aaPredicted RBP16.81■□□□□ 0.28
CAPN1-203ENST00000525013 LAMP1P11279 417 aa16.81■□□□□ 0.28
CAPN1-203ENST00000525013 CHMP24386 653 aa16.81■□□□□ 0.28
CAPN1-203ENST00000525013 KIR2DL3P43628 341 aa16.81■□□□□ 0.28
CAPN1-203ENST00000525013 PRR5P85299 388 aa16.81■□□□□ 0.28
CAPN1-203ENST00000525013 CHI3L2Q15782 390 aa16.81■□□□□ 0.28
CAPN1-203ENST00000525013 GRAMD1BQ3KR37 738 aa16.81■□□□□ 0.28
CAPN1-203ENST00000525013 CEP85LQ5SZL2 805 aa16.81■□□□□ 0.28
CAPN1-203ENST00000525013 CPTPQ5TA50 214 aa16.81■□□□□ 0.28
CAPN1-203ENST00000525013 IL23RQ5VWK5 629 aa16.81■□□□□ 0.28
CAPN1-203ENST00000525013 POMZP3Q6PJE2 187 aa16.81■□□□□ 0.28
CAPN1-203ENST00000525013 PLXDC2Q6UX71 529 aa16.81■□□□□ 0.28
CAPN1-203ENST00000525013 CDH24Q86UP0 819 aa16.81■□□□□ 0.28
CAPN1-203ENST00000525013 ZZZ3Q8IYH5 903 aa16.81■□□□□ 0.28
CAPN1-203ENST00000525013 SLC16A11Q8NCK7 471 aa16.81■□□□□ 0.28
CAPN1-203ENST00000525013 OR6Y1Q8NGX8 325 aa16.81■□□□□ 0.28
CAPN1-203ENST00000525013 JADE3Q92613 823 aa16.81■□□□□ 0.28
CAPN1-203ENST00000525013 RNASE6Q93091 150 aaKnown RBP16.81■□□□□ 0.28
CAPN1-203ENST00000525013 CHMP6Q96FZ7 201 aa16.81■□□□□ 0.28
CAPN1-203ENST00000525013 C16orf58Q96GQ5 468 aa16.81■□□□□ 0.28
CAPN1-203ENST00000525013 TM9SF2Q99805 663 aa16.81■□□□□ 0.28
CAPN1-203ENST00000525013 YIPF4Q9BSR8 244 aa16.81■□□□□ 0.28
CAPN1-203ENST00000525013 RTN4RQ9BZR6 473 aa16.81■□□□□ 0.28
CAPN1-203ENST00000525013 NTMQ9P121 344 aa16.81■□□□□ 0.28
CAPN1-203ENST00000525013 SNX8Q9Y5X2 465 aa16.81■□□□□ 0.28
CAPN1-203ENST00000525013 ABCA4P78363 2273 aa16.8■□□□□ 0.28
CAPN1-203ENST00000525013 GIMAP1-GIMAP5A0A087WTJ2 511 aa16.8■□□□□ 0.28
CAPN1-203ENST00000525013 A0A1W2PRB8 838 aa16.8■□□□□ 0.28
CAPN1-203ENST00000525013 GMFGO60234 142 aa16.8■□□□□ 0.28
CAPN1-203ENST00000525013 ALOX5P09917 674 aa16.8■□□□□ 0.28
CAPN1-203ENST00000525013 ACP2P11117 423 aa16.8■□□□□ 0.28
CAPN1-203ENST00000525013 ZNF708P17019 499 aa16.8■□□□□ 0.28
CAPN1-203ENST00000525013 POU3F2P20265 443 aaPredicted RBP16.8■□□□□ 0.28
CAPN1-203ENST00000525013 CLDN18P56856 261 aa16.8■□□□□ 0.28
CAPN1-203ENST00000525013 B3GALT5-AS1P59052 145 aa16.8■□□□□ 0.28
CAPN1-203ENST00000525013 MFSD12Q6NUT3 480 aa16.8■□□□□ 0.28
CAPN1-203ENST00000525013 FIGNL1Q6PIW4 674 aa16.8■□□□□ 0.28
CAPN1-203ENST00000525013 CHMP1BQ7LBR1 199 aa16.8■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 200.4 ms