RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 ZIC2O95409 532 aaPredicted RBP13.86□□□□□ -0.19
NUP54-217ENST00000514987 SEMA4FO95754 770 aa13.86□□□□□ -0.19
NUP54-217ENST00000514987 GLULP15104 373 aa13.86□□□□□ -0.19
NUP54-217ENST00000514987 RPS4Y1P22090 263 aaKnown RBP13.86□□□□□ -0.19
NUP54-217ENST00000514987 TRHRP34981 398 aaPredicted RBP13.86□□□□□ -0.19
NUP54-217ENST00000514987 NUDT1P36639 197 aa13.86□□□□□ -0.19
NUP54-217ENST00000514987 ETV5P41161 510 aa13.86□□□□□ -0.19
NUP54-217ENST00000514987 ETV1P50549 477 aa13.86□□□□□ -0.19
NUP54-217ENST00000514987 GAS1P54826 345 aa13.86□□□□□ -0.19
NUP54-217ENST00000514987 UBE2IP63279 158 aaKnown RBP13.86□□□□□ -0.19
NUP54-217ENST00000514987 STEAP3Q658P3 488 aa13.86□□□□□ -0.19
NUP54-217ENST00000514987 ZNF836Q6ZNA1 936 aa13.86□□□□□ -0.19
NUP54-217ENST00000514987 BCDIN3DQ7Z5W3 292 aaKnown RBP13.86□□□□□ -0.19
NUP54-217ENST00000514987 ABI3BPQ7Z7G0 1075 aa13.86□□□□□ -0.19
NUP54-217ENST00000514987 POC5Q8NA72 575 aa13.86□□□□□ -0.19
NUP54-217ENST00000514987 OR8D4Q8NGM9 314 aa13.86□□□□□ -0.19
NUP54-217ENST00000514987 WDFY2Q96P53 400 aa13.86□□□□□ -0.19
NUP54-217ENST00000514987 COQ7Q99807 217 aa13.86□□□□□ -0.19
NUP54-217ENST00000514987 MED18Q9BUE0 208 aa13.86□□□□□ -0.19
NUP54-217ENST00000514987 C14orf105Q9NVL8 296 aa13.86□□□□□ -0.19
NUP54-217ENST00000514987 CNIH4Q9P003 139 aa13.86□□□□□ -0.19
NUP54-217ENST00000514987 MMP17Q9ULZ9 603 aa13.86□□□□□ -0.19
NUP54-217ENST00000514987 COL4A2P08572 1712 aa13.86□□□□□ -0.19
NUP54-217ENST00000514987 C10orf142B7Z368 130 aa13.85□□□□□ -0.19
NUP54-217ENST00000514987 SLC30A4O14863 429 aa13.85□□□□□ -0.19
NUP54-217ENST00000514987 SURF4O15260 269 aa13.85□□□□□ -0.19
NUP54-217ENST00000514987 CHST10O43529 356 aa13.85□□□□□ -0.19
NUP54-217ENST00000514987 APOA1P02647 267 aa13.85□□□□□ -0.19
NUP54-217ENST00000514987 GUSBP08236 651 aa13.85□□□□□ -0.19
NUP54-217ENST00000514987 RPS19P39019 145 aaKnown RBP13.85□□□□□ -0.19
NUP54-217ENST00000514987 PGGHGQ32M88 737 aa13.85□□□□□ -0.19
NUP54-217ENST00000514987 PLK5Q496M5 336 aa13.85□□□□□ -0.19
NUP54-217ENST00000514987 RPL13AP3Q6NVV1 102 aa13.85□□□□□ -0.19
NUP54-217ENST00000514987 ZNF620Q6ZNG0 422 aa13.85□□□□□ -0.19
NUP54-217ENST00000514987 OOSP2Q86WS3 158 aa13.85□□□□□ -0.19
NUP54-217ENST00000514987 SNX29P2Q8IUI4 249 aa13.85□□□□□ -0.19
NUP54-217ENST00000514987 NKAIN4Q8IVV8 208 aa13.85□□□□□ -0.19
NUP54-217ENST00000514987 POGLUT1Q8NBL1 392 aa13.85□□□□□ -0.19
NUP54-217ENST00000514987 OR2T33Q8NG76 320 aa13.85□□□□□ -0.19
NUP54-217ENST00000514987 RPLP0P6Q8NHW5 317 aa13.85□□□□□ -0.19
NUP54-217ENST00000514987 UFD1Q92890 307 aa13.85□□□□□ -0.19
NUP54-217ENST00000514987 MSANTD3Q96H12 275 aa13.85□□□□□ -0.19
NUP54-217ENST00000514987 NELL2Q99435 816 aa13.85□□□□□ -0.19
NUP54-217ENST00000514987 PRR14Q9BWN1 585 aa13.85□□□□□ -0.19
NUP54-217ENST00000514987 JAM3Q9BX67 310 aa13.85□□□□□ -0.19
NUP54-217ENST00000514987 C6orf106Q9H6K1 298 aaPredicted RBP13.85□□□□□ -0.19
NUP54-217ENST00000514987 IL21RQ9HBE5 538 aa13.85□□□□□ -0.19
NUP54-217ENST00000514987 POLMQ9NP87 494 aaPredicted RBP13.85□□□□□ -0.19
NUP54-217ENST00000514987 TMEM5Q9Y2B1 443 aa13.85□□□□□ -0.19
NUP54-217ENST00000514987 GSTK1Q9Y2Q3 226 aa13.85□□□□□ -0.19
NUP54-217ENST00000514987 LRP4O75096 1905 aa13.84□□□□□ -0.19
NUP54-217ENST00000514987 LOC105369274A0A096LPK9 316 aa13.84□□□□□ -0.19
NUP54-217ENST00000514987 LOC102723532A0A0G2JNH3 316 aa13.84□□□□□ -0.19
NUP54-217ENST00000514987 TCRBV21S2A2A0A5A6 115 aa13.84□□□□□ -0.19
NUP54-217ENST00000514987 SLC35F4A4IF30 521 aa13.84□□□□□ -0.19
NUP54-217ENST00000514987 GALR3O60755 368 aaPredicted RBP13.84□□□□□ -0.19
NUP54-217ENST00000514987 GAAP10253 952 aa13.84□□□□□ -0.19
NUP54-217ENST00000514987 NID1P14543 1247 aa13.84□□□□□ -0.19
NUP54-217ENST00000514987 GABRG2P18507 467 aa13.84□□□□□ -0.19
NUP54-217ENST00000514987 NT5EP21589 574 aa13.84□□□□□ -0.19
NUP54-217ENST00000514987 CDH11P55287 796 aa13.84□□□□□ -0.19
NUP54-217ENST00000514987 LSM11P83369 360 aaKnown RBP eCLIP13.84□□□□□ -0.19
NUP54-217ENST00000514987 DSG2Q14126 1118 aa13.84□□□□□ -0.19
NUP54-217ENST00000514987 DCST2Q5T1A1 773 aa13.84□□□□□ -0.19
NUP54-217ENST00000514987 AADACL4Q5VUY2 407 aa13.84□□□□□ -0.19
NUP54-217ENST00000514987 LIPKQ5VXJ0 399 aa13.84□□□□□ -0.19
NUP54-217ENST00000514987 NXNL2Q5VZ03 156 aa13.84□□□□□ -0.19
NUP54-217ENST00000514987 ARMC6Q6NXE6 501 aa13.84□□□□□ -0.19
NUP54-217ENST00000514987 TMEM92Q6UXU6 159 aa13.84□□□□□ -0.19
NUP54-217ENST00000514987 NRMQ8IXM6 262 aa13.84□□□□□ -0.19
NUP54-217ENST00000514987 OR4N4Q8N0Y3 316 aa13.84□□□□□ -0.19
NUP54-217ENST00000514987 CSNK1A1LQ8N752 337 aa13.84□□□□□ -0.19
NUP54-217ENST00000514987 COX18Q8N8Q8 333 aa13.84□□□□□ -0.19
NUP54-217ENST00000514987 ZBTB8BQ8NAP8 495 aaPredicted RBP13.84□□□□□ -0.19
NUP54-217ENST00000514987 SETD6Q8TBK2 473 aa13.84□□□□□ -0.19
NUP54-217ENST00000514987 FAM174AQ8TBP5 190 aa13.84□□□□□ -0.19
NUP54-217ENST00000514987 BRIX1Q8TDN6 353 aaKnown RBP13.84□□□□□ -0.19
NUP54-217ENST00000514987 FAM3CQ92520 227 aa13.84□□□□□ -0.19
NUP54-217ENST00000514987 KCNS3Q9BQ31 491 aa13.84□□□□□ -0.19
NUP54-217ENST00000514987 HRASLS2Q9NWW9 162 aa13.84□□□□□ -0.19
NUP54-217ENST00000514987 IRAK4Q9NWZ3 460 aa13.84□□□□□ -0.19
NUP54-217ENST00000514987 H2AFY2Q9P0M6 372 aaPredicted RBP13.84□□□□□ -0.19
NUP54-217ENST00000514987 USP36Q9P275 1121 aaKnown RBP13.84□□□□□ -0.19
NUP54-217ENST00000514987 SLC7A7Q9UM01 511 aa13.84□□□□□ -0.19
NUP54-217ENST00000514987 EXOGQ9Y2C4 368 aaKnown RBP13.84□□□□□ -0.19
NUP54-217ENST00000514987 SPIN1Q9Y657 262 aaPredicted RBP13.84□□□□□ -0.19
NUP54-217ENST00000514987 CYR61O00622 381 aa13.83□□□□□ -0.19
NUP54-217ENST00000514987 COQ9O75208 318 aa13.83□□□□□ -0.19
NUP54-217ENST00000514987 IGLV3-19P01714 112 aa13.83□□□□□ -0.19
NUP54-217ENST00000514987 GNSP15586 552 aa13.83□□□□□ -0.19
NUP54-217ENST00000514987 HTR1FP30939 366 aa13.83□□□□□ -0.19
NUP54-217ENST00000514987 GABRA5P31644 462 aa13.83□□□□□ -0.19
NUP54-217ENST00000514987 TNFSF8P32971 234 aa13.83□□□□□ -0.19
NUP54-217ENST00000514987 ZNF136P52737 540 aa13.83□□□□□ -0.19
NUP54-217ENST00000514987 SKP1P63208 163 aa13.83□□□□□ -0.19
NUP54-217ENST00000514987 DLX2Q07687 328 aaPredicted RBP13.83□□□□□ -0.19
NUP54-217ENST00000514987 ACSM1Q08AH1 577 aa13.83□□□□□ -0.19
NUP54-217ENST00000514987 DOC2BQ14184 412 aa13.83□□□□□ -0.19
NUP54-217ENST00000514987 TCEA2Q15560 299 aa13.83□□□□□ -0.19
NUP54-217ENST00000514987 GPR68Q15743 365 aa13.83□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms