RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 RFX3P48380 749 aa13.05□□□□□ -0.32
NUP54-216ENST00000514901 GNGT1P63211 74 aa13.05□□□□□ -0.32
NUP54-216ENST00000514901 ARHGAP11BQ3KRB8 267 aa13.05□□□□□ -0.32
NUP54-216ENST00000514901 DCST2Q5T1A1 773 aa13.05□□□□□ -0.32
NUP54-216ENST00000514901 DESI1Q6ICB0 168 aa13.05□□□□□ -0.32
NUP54-216ENST00000514901 FIGNL1Q6PIW4 674 aa13.05□□□□□ -0.32
NUP54-216ENST00000514901 ANGPTL8Q6UXH0 198 aa13.05□□□□□ -0.32
NUP54-216ENST00000514901 SPATA21Q7Z572 469 aa13.05□□□□□ -0.32
NUP54-216ENST00000514901 CPLX4Q7Z7G2 160 aa13.05□□□□□ -0.32
NUP54-216ENST00000514901 GHDCQ8N2G8 530 aa13.05□□□□□ -0.32
NUP54-216ENST00000514901 TMEM251Q8N6I4 163 aa13.05□□□□□ -0.32
NUP54-216ENST00000514901 CHDHQ8NE62 594 aaPredicted RBP13.05□□□□□ -0.32
NUP54-216ENST00000514901 OR1J4Q8NGS1 313 aa13.05□□□□□ -0.32
NUP54-216ENST00000514901 ZFP90Q8TF47 636 aa13.05□□□□□ -0.32
NUP54-216ENST00000514901 TBL1XR1Q9BZK7 514 aa13.05□□□□□ -0.32
NUP54-216ENST00000514901 OR51I1Q9H343 314 aa13.05□□□□□ -0.32
NUP54-216ENST00000514901 RAD21L1Q9H4I0 556 aa13.05□□□□□ -0.32
NUP54-216ENST00000514901 SLC52A3Q9NQ40 469 aa13.05□□□□□ -0.32
NUP54-216ENST00000514901 SAR1AQ9NR31 198 aa13.05□□□□□ -0.32
NUP54-216ENST00000514901 LEF1Q9UJU2 399 aaPredicted RBP13.05□□□□□ -0.32
NUP54-216ENST00000514901 WIF1Q9Y5W5 379 aa13.05□□□□□ -0.32
NUP54-216ENST00000514901 LRRC3CA6NJW4 275 aa13.04□□□□□ -0.32
NUP54-216ENST00000514901 FAM166BA8MTA8 275 aa13.04□□□□□ -0.32
NUP54-216ENST00000514901 CCDC22O60826 627 aa13.04□□□□□ -0.32
NUP54-216ENST00000514901 CBR3O75828 277 aa13.04□□□□□ -0.32
NUP54-216ENST00000514901 UNC5CO95185 931 aa13.04□□□□□ -0.32
NUP54-216ENST00000514901 HPGDP15428 266 aa13.04□□□□□ -0.32
NUP54-216ENST00000514901 CAPN3P20807 821 aa13.04□□□□□ -0.32
NUP54-216ENST00000514901 PTPN6P29350 595 aa13.04□□□□□ -0.32
NUP54-216ENST00000514901 SEC24CP53992 1094 aa13.04□□□□□ -0.32
NUP54-216ENST00000514901 GYS2P54840 703 aa13.04□□□□□ -0.32
NUP54-216ENST00000514901 RPS26P62854 115 aaKnown RBP13.04□□□□□ -0.32
NUP54-216ENST00000514901 MAPRE2Q15555 327 aa13.04□□□□□ -0.32
NUP54-216ENST00000514901 CMPK2Q5EBM0 449 aa13.04□□□□□ -0.32
NUP54-216ENST00000514901 AP1ARQ63HQ0 302 aa13.04□□□□□ -0.32
NUP54-216ENST00000514901 TNFAIP8L2Q6P589 184 aaPredicted RBP13.04□□□□□ -0.32
NUP54-216ENST00000514901 SLC2A7Q6PXP3 512 aa13.04□□□□□ -0.32
NUP54-216ENST00000514901 C16orf62Q7Z3J2 963 aa13.04□□□□□ -0.32
NUP54-216ENST00000514901 RNF130Q86XS8 419 aa13.04□□□□□ -0.32
NUP54-216ENST00000514901 ZNF527Q8NB42 609 aa13.04□□□□□ -0.32
NUP54-216ENST00000514901 OR52N2Q8NGI0 321 aa13.04□□□□□ -0.32
NUP54-216ENST00000514901 OR5D16Q8NGK9 328 aa13.04□□□□□ -0.32
NUP54-216ENST00000514901 XAGE5Q8WWM1 108 aa13.04□□□□□ -0.32
NUP54-216ENST00000514901 OTUB1Q96FW1 271 aaPredicted RBP13.04□□□□□ -0.32
NUP54-216ENST00000514901 SDF2Q99470 211 aa13.04□□□□□ -0.32
NUP54-216ENST00000514901 ELAC2Q9BQ52 826 aaKnown RBP13.04□□□□□ -0.32
NUP54-216ENST00000514901 PAIP1Q9H074 479 aaKnown RBP13.04□□□□□ -0.32
NUP54-216ENST00000514901 SERHL2Q9H4I8 314 aa13.04□□□□□ -0.32
NUP54-216ENST00000514901 TPT1P8Q9HAU6 139 aa13.04□□□□□ -0.32
NUP54-216ENST00000514901 ACKR4Q9NPB9 350 aa13.04□□□□□ -0.32
NUP54-216ENST00000514901 POLE3Q9NRF9 147 aa13.04□□□□□ -0.32
NUP54-216ENST00000514901 PLSCR2Q9NRY7 297 aa13.04□□□□□ -0.32
NUP54-216ENST00000514901 THUMPD1Q9NXG2 353 aaKnown RBP13.04□□□□□ -0.32
NUP54-216ENST00000514901 FAM53CQ9NYF3 392 aa13.04□□□□□ -0.32
NUP54-216ENST00000514901 LIPT1Q9Y234 373 aa13.04□□□□□ -0.32
NUP54-216ENST00000514901 NDUFAF1Q9Y375 327 aa13.04□□□□□ -0.32
NUP54-216ENST00000514901 PCDHB14Q9Y5E9 798 aa13.04□□□□□ -0.32
NUP54-216ENST00000514901 KCNE3Q9Y6H6 103 aa13.04□□□□□ -0.32
NUP54-216ENST00000514901 ALG1L2C9J202 215 aa13.03□□□□□ -0.32
NUP54-216ENST00000514901 SCDO00767 359 aa13.03□□□□□ -0.32
NUP54-216ENST00000514901 ANGPT2O15123 496 aa13.03□□□□□ -0.32
NUP54-216ENST00000514901 SUSD5O60279 629 aa13.03□□□□□ -0.32
NUP54-216ENST00000514901 HCN1O60741 890 aa13.03□□□□□ -0.32
NUP54-216ENST00000514901 STX11O75558 287 aa13.03□□□□□ -0.32
NUP54-216ENST00000514901 IGHG3P01860 377 aa13.03□□□□□ -0.32
NUP54-216ENST00000514901 OR12D1P0DN82 309 aa13.03□□□□□ -0.32
NUP54-216ENST00000514901 ENDOUP21128 410 aaKnown RBP13.03□□□□□ -0.32
NUP54-216ENST00000514901 DRD4P21917 467 aa13.03□□□□□ -0.32
NUP54-216ENST00000514901 GNLYP22749 145 aa13.03□□□□□ -0.32
NUP54-216ENST00000514901 PPIBP23284 216 aaKnown RBP13.03□□□□□ -0.32
NUP54-216ENST00000514901 MAGEA5P43359 124 aa13.03□□□□□ -0.32
NUP54-216ENST00000514901 GAS1P54826 345 aa13.03□□□□□ -0.32
NUP54-216ENST00000514901 KCNC4Q03721 635 aa13.03□□□□□ -0.32
NUP54-216ENST00000514901 C17orf67Q0P5P2 114 aa13.03□□□□□ -0.32
NUP54-216ENST00000514901 SF3A3Q12874 501 aaKnown RBP eCLIP13.03□□□□□ -0.32
NUP54-216ENST00000514901 GRAMD1BQ3KR37 738 aa13.03□□□□□ -0.32
NUP54-216ENST00000514901 LRIF1Q5T3J3 769 aa13.03□□□□□ -0.32
NUP54-216ENST00000514901 CCNJQ5T5M9 372 aa13.03□□□□□ -0.32
NUP54-216ENST00000514901 FNDC7Q5VTL7 733 aa13.03□□□□□ -0.32
NUP54-216ENST00000514901 HEPHL1Q6MZM0 1159 aa13.03□□□□□ -0.32
NUP54-216ENST00000514901 ARHGAP11AQ6P4F7 1023 aa13.03□□□□□ -0.32
NUP54-216ENST00000514901 DNAJC14Q6Y2X3 702 aaPredicted RBP13.03□□□□□ -0.32
NUP54-216ENST00000514901 PLCZ1Q86YW0 608 aa13.03□□□□□ -0.32
NUP54-216ENST00000514901 MISPQ8IVT2 679 aa13.03□□□□□ -0.32
NUP54-216ENST00000514901 DPP10Q8N608 796 aa13.03□□□□□ -0.32
NUP54-216ENST00000514901 OIT3Q8WWZ8 545 aa13.03□□□□□ -0.32
NUP54-216ENST00000514901 GNRHR2Q96P88 292 aa13.03□□□□□ -0.32
NUP54-216ENST00000514901 DEFB127Q9H1M4 99 aa13.03□□□□□ -0.32
NUP54-216ENST00000514901 TSPAN10Q9H1Z9 355 aaPredicted RBP13.03□□□□□ -0.32
NUP54-216ENST00000514901 ZNF703Q9H7S9 590 aaPredicted RBP13.03□□□□□ -0.32
NUP54-216ENST00000514901 GALNT9Q9HCQ5 603 aa13.03□□□□□ -0.32
NUP54-216ENST00000514901 PPP4R1LQ9P1A2 415 aa13.03□□□□□ -0.32
NUP54-216ENST00000514901 C15orf41Q9Y2V0 281 aa13.03□□□□□ -0.32
NUP54-216ENST00000514901 MRPS18CQ9Y3D5 142 aaKnown RBP13.03□□□□□ -0.32
NUP54-216ENST00000514901 GMEB1Q9Y692 573 aa13.03□□□□□ -0.32
NUP54-216ENST00000514901 HIVEP3Q5T1R4 2406 aa13.02□□□□□ -0.32
NUP54-216ENST00000514901 A0A1B0GVC2 190 aa13.02□□□□□ -0.33
NUP54-216ENST00000514901 A0A1W2PQD3 144 aa13.02□□□□□ -0.33
NUP54-216ENST00000514901 H3BNH8 94 aa13.02□□□□□ -0.33
NUP54-216ENST00000514901 CLIC1O00299 241 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms