RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 ZNF750Q32MQ0 723 aa7.79□□□□□ -1.16
USP54-215ENST00000497106 TIMM50Q3ZCQ8 353 aa7.79□□□□□ -1.16
USP54-215ENST00000497106 RNF220Q5VTB9 566 aa7.79□□□□□ -1.16
USP54-215ENST00000497106 OPN5Q6U736 354 aa7.79□□□□□ -1.16
USP54-215ENST00000497106 RAB11FIP2Q7L804 512 aa7.79□□□□□ -1.16
USP54-215ENST00000497106 LILRA2Q8N149 483 aa7.79□□□□□ -1.16
USP54-215ENST00000497106 TMEM156Q8N614 296 aa7.79□□□□□ -1.16
USP54-215ENST00000497106 ZNF540Q8NDQ6 660 aa7.79□□□□□ -1.16
USP54-215ENST00000497106 SLC2A12Q8TD20 617 aa7.79□□□□□ -1.16
USP54-215ENST00000497106 NUDT8Q8WV74 236 aa7.79□□□□□ -1.16
USP54-215ENST00000497106 OTULINQ96BN8 352 aa7.79□□□□□ -1.16
USP54-215ENST00000497106 SLC35A4Q96G79 324 aa7.79□□□□□ -1.16
USP54-215ENST00000497106 PRR33A8MZF0 331 aa7.79□□□□□ -1.16
USP54-215ENST00000497106 ACP1P24666 158 aa7.79□□□□□ -1.16
USP54-215ENST00000497106 SLC6A6P31641 620 aa7.79□□□□□ -1.16
USP54-215ENST00000497106 PCBP3P57721 371 aaKnown RBP7.79□□□□□ -1.16
USP54-215ENST00000497106 KCNJ10P78508 379 aa7.79□□□□□ -1.16
USP54-215ENST00000497106 DUSP5Q16690 384 aa7.79□□□□□ -1.16
USP54-215ENST00000497106 PERM1Q5SV97 790 aa7.79□□□□□ -1.16
USP54-215ENST00000497106 ZNF613Q6PF04 617 aa7.79□□□□□ -1.16
USP54-215ENST00000497106 OVCH1Q7RTY7 1134 aa7.79□□□□□ -1.16
USP54-215ENST00000497106 ACOT11Q8WXI4 607 aaPredicted RBP7.79□□□□□ -1.16
USP54-215ENST00000497106 SLCO4A1Q96BD0 722 aa7.79□□□□□ -1.16
USP54-215ENST00000497106 ZNF501Q96CX3 271 aaPredicted RBP7.79□□□□□ -1.16
USP54-215ENST00000497106 DHRS1Q96LJ7 313 aa7.79□□□□□ -1.16
USP54-215ENST00000497106 ZNF570Q96NI8 536 aa7.79□□□□□ -1.16
USP54-215ENST00000497106 SDF2Q99470 211 aa7.79□□□□□ -1.16
USP54-215ENST00000497106 NRTNQ99748 197 aa7.79□□□□□ -1.16
USP54-215ENST00000497106 WDR54Q9H977 334 aa7.79□□□□□ -1.16
USP54-215ENST00000497106 FBXO8Q9NRD0 319 aa7.79□□□□□ -1.16
USP54-215ENST00000497106 TMEM74BQ9NUR3 256 aa7.79□□□□□ -1.16
USP54-215ENST00000497106 NTMQ9P121 344 aa7.79□□□□□ -1.16
USP54-215ENST00000497106 SEMA5BQ9P283 1151 aa7.79□□□□□ -1.16
USP54-215ENST00000497106 MRPS2Q9Y399 296 aaKnown RBP7.79□□□□□ -1.16
USP54-215ENST00000497106 RPL36Q9Y3U8 105 aaKnown RBP7.79□□□□□ -1.16
USP54-215ENST00000497106 PCDHGB6Q9Y5F9 930 aa7.79□□□□□ -1.16
USP54-215ENST00000497106 PCDHGA10Q9Y5H3 936 aa7.79□□□□□ -1.16
USP54-215ENST00000497106 R4GN57 208 aa7.79□□□□□ -1.16
USP54-215ENST00000497106 ANKRD12Q6UB98 2062 aa7.79□□□□□ -1.16
USP54-215ENST00000497106 MYL12BO14950 172 aa7.79□□□□□ -1.16
USP54-215ENST00000497106 HCRTR1O43613 425 aa7.79□□□□□ -1.16
USP54-215ENST00000497106 RGS10O43665 173 aa7.79□□□□□ -1.16
USP54-215ENST00000497106 DIRAS1O95057 198 aa7.79□□□□□ -1.16
USP54-215ENST00000497106 ZGLP1P0C6A0 271 aa7.79□□□□□ -1.16
USP54-215ENST00000497106 CYP4B1P13584 511 aa7.79□□□□□ -1.16
USP54-215ENST00000497106 RPL4P36578 427 aaKnown RBP7.79□□□□□ -1.16
USP54-215ENST00000497106 ZNF41P51814 821 aaPredicted RBP7.79□□□□□ -1.16
USP54-215ENST00000497106 NR0B1P51843 470 aaKnown RBP7.79□□□□□ -1.16
USP54-215ENST00000497106 RPS7P62081 194 aaKnown RBP7.79□□□□□ -1.16
USP54-215ENST00000497106 KCNAB2Q13303 367 aa7.79□□□□□ -1.16
USP54-215ENST00000497106 ERV3-1Q14264 604 aa7.79□□□□□ -1.16
USP54-215ENST00000497106 SNAPC1Q16533 368 aa7.79□□□□□ -1.16
USP54-215ENST00000497106 KLHL22Q53GT1 634 aa7.79□□□□□ -1.16
USP54-215ENST00000497106 TRMT12Q53H54 448 aaKnown RBP7.79□□□□□ -1.16
USP54-215ENST00000497106 FAM219BQ5XKK7 198 aa7.79□□□□□ -1.16
USP54-215ENST00000497106 CCDC81Q6ZN84 652 aa7.79□□□□□ -1.16
USP54-215ENST00000497106 BPIFB6Q8NFQ5 453 aa7.79□□□□□ -1.16
USP54-215ENST00000497106 OR4K17Q8NGC6 315 aa7.79□□□□□ -1.16
USP54-215ENST00000497106 ZNF350Q9GZX5 532 aa7.79□□□□□ -1.16
USP54-215ENST00000497106 ZNF696Q9H7X3 374 aa7.79□□□□□ -1.16
USP54-215ENST00000497106 SLC6A13Q9NSD5 602 aa7.79□□□□□ -1.16
USP54-215ENST00000497106 FAM118AQ9NWS6 357 aa7.79□□□□□ -1.16
USP54-215ENST00000497106 GMPR2Q9P2T1 348 aaKnown RBP7.79□□□□□ -1.16
USP54-215ENST00000497106 PCDHGB1Q9Y5G3 927 aa7.79□□□□□ -1.16
USP54-215ENST00000497106 EFCAB9A8MZ26 197 aa7.78□□□□□ -1.16
USP54-215ENST00000497106 C10orf142B7Z368 130 aa7.78□□□□□ -1.16
USP54-215ENST00000497106 FOXS1O43638 330 aa7.78□□□□□ -1.16
USP54-215ENST00000497106 EIF4E2O60573 245 aaKnown RBP7.78□□□□□ -1.16
USP54-215ENST00000497106 PRAMEF10O60809 474 aa7.78□□□□□ -1.16
USP54-215ENST00000497106 ACP2P11117 423 aa7.78□□□□□ -1.16
USP54-215ENST00000497106 FGF5P12034 268 aa7.78□□□□□ -1.16
USP54-215ENST00000497106 OSMP13725 252 aa7.78□□□□□ -1.16
USP54-215ENST00000497106 NID1P14543 1247 aa7.78□□□□□ -1.16
USP54-215ENST00000497106 DRD5P21918 477 aa7.78□□□□□ -1.16
USP54-215ENST00000497106 ST13P50502 369 aaKnown RBP7.78□□□□□ -1.16
USP54-215ENST00000497106 CRISP1P54107 249 aa7.78□□□□□ -1.16
USP54-215ENST00000497106 MC2RQ01718 297 aa7.78□□□□□ -1.16
USP54-215ENST00000497106 NPRL3Q12980 569 aa7.78□□□□□ -1.16
USP54-215ENST00000497106 MFSD13AQ14CX5 517 aa7.78□□□□□ -1.16
USP54-215ENST00000497106 PROX2Q3B8N5 592 aa7.78□□□□□ -1.16
USP54-215ENST00000497106 PAPD4Q6PIY7 484 aaKnown RBP7.78□□□□□ -1.16
USP54-215ENST00000497106 TSPYL5Q86VY4 417 aaPredicted RBP7.78□□□□□ -1.16
USP54-215ENST00000497106 SLC16A11Q8NCK7 471 aa7.78□□□□□ -1.16
USP54-215ENST00000497106 OR10Q1Q8NGQ4 319 aa7.78□□□□□ -1.16
USP54-215ENST00000497106 TRUB1Q8WWH5 349 aaKnown RBP7.78□□□□□ -1.16
USP54-215ENST00000497106 ANKRD9Q96BM1 317 aaPredicted RBP7.78□□□□□ -1.16
USP54-215ENST00000497106 RACGAP1Q9H0H5 632 aa7.78□□□□□ -1.16
USP54-215ENST00000497106 SLAMF7Q9NQ25 335 aa7.78□□□□□ -1.16
USP54-215ENST00000497106 ABCG2Q9UNQ0 655 aa7.78□□□□□ -1.16
USP54-215ENST00000497106 SERINC4A6NH21 518 aa7.78□□□□□ -1.16
USP54-215ENST00000497106 IDSB3KWA1 339 aa7.78□□□□□ -1.16
USP54-215ENST00000497106 KIAA0513O60268 411 aa7.78□□□□□ -1.16
USP54-215ENST00000497106 ALPLP05186 524 aa7.78□□□□□ -1.16
USP54-215ENST00000497106 PDX1P52945 283 aa7.78□□□□□ -1.16
USP54-215ENST00000497106 IGLV3-21P80748 117 aaPredicted RBP7.78□□□□□ -1.16
USP54-215ENST00000497106 NCF4Q15080 339 aa7.78□□□□□ -1.16
USP54-215ENST00000497106 ULK3Q6PHR2 472 aa7.78□□□□□ -1.16
USP54-215ENST00000497106 GALNT15Q8N3T1 639 aa7.78□□□□□ -1.16
USP54-215ENST00000497106 B3GNT7Q8NFL0 401 aa7.78□□□□□ -1.16
USP54-215ENST00000497106 PIK3R3Q92569 461 aa7.78□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms