RNA–Protein interactions for RNA: ENST00000496043.5

PTPRF-214, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 415 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-214ENST00000496043 B3GALT5-AS1P59052 145 aa11.54□□□□□ -0.56
PTPRF-214ENST00000496043 VSNL1P62760 191 aa11.54□□□□□ -0.56
PTPRF-214ENST00000496043 RPL38P63173 70 aaKnown RBP11.54□□□□□ -0.56
PTPRF-214ENST00000496043 C17orf67Q0P5P2 114 aa11.54□□□□□ -0.56
PTPRF-214ENST00000496043 FOXF2Q12947 444 aa11.54□□□□□ -0.56
PTPRF-214ENST00000496043 GLYR1Q49A26 553 aaPredicted RBP11.54□□□□□ -0.56
PTPRF-214ENST00000496043 FLYWCH1Q4VC44 716 aa11.54□□□□□ -0.56
PTPRF-214ENST00000496043 LRIG3Q6UXM1 1119 aa11.54□□□□□ -0.56
PTPRF-214ENST00000496043 SPNS3Q6ZMD2 512 aa11.54□□□□□ -0.56
PTPRF-214ENST00000496043 MEIOBQ8N635 442 aa11.54□□□□□ -0.56
PTPRF-214ENST00000496043 CDRT4Q8N9R6 151 aa11.54□□□□□ -0.56
PTPRF-214ENST00000496043 NUP43Q8NFH3 380 aa11.54□□□□□ -0.56
PTPRF-214ENST00000496043 GOT1L1Q8NHS2 421 aaPredicted RBP11.54□□□□□ -0.56
PTPRF-214ENST00000496043 TCP10LQ8TDR4 215 aa11.54□□□□□ -0.56
PTPRF-214ENST00000496043 TWIST2Q8WVJ9 160 aa11.54□□□□□ -0.56
PTPRF-214ENST00000496043 CIDECQ96AQ7 238 aaPredicted RBP11.54□□□□□ -0.56
PTPRF-214ENST00000496043 INTS12Q96CB8 462 aaKnown RBP11.54□□□□□ -0.56
PTPRF-214ENST00000496043 PPP3R2Q96LZ3 170 aa11.54□□□□□ -0.56
PTPRF-214ENST00000496043 TBL1XR1Q9BZK7 514 aa11.54□□□□□ -0.56
PTPRF-214ENST00000496043 PIGMQ9H3S5 423 aa11.54□□□□□ -0.56
PTPRF-214ENST00000496043 HHATLQ9HCP6 504 aa11.54□□□□□ -0.56
PTPRF-214ENST00000496043 EQTNQ9NQ60 294 aa11.54□□□□□ -0.56
PTPRF-214ENST00000496043 RASSF1Q9NS23 344 aa11.54□□□□□ -0.56
PTPRF-214ENST00000496043 NTMQ9P121 344 aa11.54□□□□□ -0.56
PTPRF-214ENST00000496043 ADGRG4Q8IZF6 3080 aa11.54□□□□□ -0.56
PTPRF-214ENST00000496043 GXYLT2A0PJZ3 443 aa11.53□□□□□ -0.56
PTPRF-214ENST00000496043 A6NNC1 897 aa11.53□□□□□ -0.56
PTPRF-214ENST00000496043 PIP5K1BO14986 540 aa11.53□□□□□ -0.56
PTPRF-214ENST00000496043 EMC8O43402 210 aa11.53□□□□□ -0.56
PTPRF-214ENST00000496043 NKX2-2O95096 273 aa11.53□□□□□ -0.56
PTPRF-214ENST00000496043 BCKDHAP12694 445 aa11.53□□□□□ -0.56
PTPRF-214ENST00000496043 CD1EP15812 388 aa11.53□□□□□ -0.56
PTPRF-214ENST00000496043 DNAJA1P31689 397 aaKnown RBP11.53□□□□□ -0.56
PTPRF-214ENST00000496043 RPL3P39023 403 aaKnown RBP11.53□□□□□ -0.56
PTPRF-214ENST00000496043 MAP3K8P41279 467 aa11.53□□□□□ -0.56
PTPRF-214ENST00000496043 FRKP42685 505 aaPredicted RBP11.53□□□□□ -0.56
PTPRF-214ENST00000496043 DIO3P55073 304 aa11.53□□□□□ -0.56
PTPRF-214ENST00000496043 STX5Q13190 355 aa11.53□□□□□ -0.56
PTPRF-214ENST00000496043 PDE7AQ13946 482 aa11.53□□□□□ -0.56
PTPRF-214ENST00000496043 GANABQ14697 944 aaKnown RBP11.53□□□□□ -0.56
PTPRF-214ENST00000496043 ZNF385BQ569K4 471 aa11.53□□□□□ -0.56
PTPRF-214ENST00000496043 RAET1LQ5VY80 246 aa11.53□□□□□ -0.56
PTPRF-214ENST00000496043 EMBQ6PCB8 327 aa11.53□□□□□ -0.56
PTPRF-214ENST00000496043 ZCCHC12Q6PEW1 402 aa11.53□□□□□ -0.56
PTPRF-214ENST00000496043 P4HA3Q7Z4N8 544 aa11.53□□□□□ -0.56
PTPRF-214ENST00000496043 GRAMD2AQ8IUY3 354 aa11.53□□□□□ -0.56
PTPRF-214ENST00000496043 CLHC1Q8NHS4 586 aa11.53□□□□□ -0.56
PTPRF-214ENST00000496043 LINC01560Q8TB33 94 aa11.53□□□□□ -0.56
PTPRF-214ENST00000496043 PIK3R3Q92569 461 aa11.53□□□□□ -0.56
PTPRF-214ENST00000496043 SLC9A6Q92581 669 aa11.53□□□□□ -0.56
PTPRF-214ENST00000496043 PIGQQ9BRB3 760 aa11.53□□□□□ -0.56
PTPRF-214ENST00000496043 GPATCH1Q9BRR8 931 aaKnown RBP11.53□□□□□ -0.56
PTPRF-214ENST00000496043 G6PC3Q9BUM1 346 aa11.53□□□□□ -0.56
PTPRF-214ENST00000496043 MECRQ9BV79 373 aa11.53□□□□□ -0.56
PTPRF-214ENST00000496043 RBM24Q9BX46 236 aaKnown RBP11.53□□□□□ -0.56
PTPRF-214ENST00000496043 CLEC4MQ9H2X3 399 aaPredicted RBP11.53□□□□□ -0.56
PTPRF-214ENST00000496043 FLRT3Q9NZU0 649 aa11.53□□□□□ -0.56
PTPRF-214ENST00000496043 CLCF1Q9UBD9 225 aa11.53□□□□□ -0.56
PTPRF-214ENST00000496043 ZNF337Q9Y3M9 751 aa11.53□□□□□ -0.56
PTPRF-214ENST00000496043 EXPH5Q8NEV8 1989 aa11.53□□□□□ -0.56
PTPRF-214ENST00000496043 POLQO75417 2590 aa11.53□□□□□ -0.56
PTPRF-214ENST00000496043 DCHS2Q6V1P9 2916 aa11.53□□□□□ -0.56
PTPRF-214ENST00000496043 C17orf51A8MQB3 221 aa11.52□□□□□ -0.57
PTPRF-214ENST00000496043 TMEM233B4DJY2 109 aa11.52□□□□□ -0.57
PTPRF-214ENST00000496043 B4DXG7 233 aa11.52□□□□□ -0.57
PTPRF-214ENST00000496043 HCRTR2O43614 444 aa11.52□□□□□ -0.57
PTPRF-214ENST00000496043 PEX11AO75192 247 aa11.52□□□□□ -0.57
PTPRF-214ENST00000496043 TNFRSF21O75509 655 aa11.52□□□□□ -0.57
PTPRF-214ENST00000496043 SLU7O95391 586 aaKnown RBP11.52□□□□□ -0.57
PTPRF-214ENST00000496043 ANGPTL1O95841 491 aa11.52□□□□□ -0.57
PTPRF-214ENST00000496043 IGKV1D-16P01601 117 aa11.52□□□□□ -0.57
PTPRF-214ENST00000496043 CRHP06850 196 aa11.52□□□□□ -0.57
PTPRF-214ENST00000496043 ART1P52961 327 aa11.52□□□□□ -0.57
PTPRF-214ENST00000496043 PRR5P85299 388 aa11.52□□□□□ -0.57
PTPRF-214ENST00000496043 SORDQ00796 357 aa11.52□□□□□ -0.57
PTPRF-214ENST00000496043 MLC1Q15049 377 aa11.52□□□□□ -0.57
PTPRF-214ENST00000496043 GRAMD1BQ3KR37 738 aa11.52□□□□□ -0.57
PTPRF-214ENST00000496043 ATP6AP1LQ52LC2 224 aa11.52□□□□□ -0.57
PTPRF-214ENST00000496043 OR2A2Q6IF42 318 aa11.52□□□□□ -0.57
PTPRF-214ENST00000496043 WDR93Q6P2C0 686 aa11.52□□□□□ -0.57
PTPRF-214ENST00000496043 PLXDC2Q6UX71 529 aa11.52□□□□□ -0.57
PTPRF-214ENST00000496043 SZRD1Q7Z422 152 aa11.52□□□□□ -0.57
PTPRF-214ENST00000496043 LUZP2Q86TE4 346 aa11.52□□□□□ -0.57
PTPRF-214ENST00000496043 EXOC3L1Q86VI1 746 aa11.52□□□□□ -0.57
PTPRF-214ENST00000496043 UBQLNLQ8IYU4 475 aa11.52□□□□□ -0.57
PTPRF-214ENST00000496043 NATD1Q8N6N6 113 aa11.52□□□□□ -0.57
PTPRF-214ENST00000496043 OR6Y1Q8NGX8 325 aa11.52□□□□□ -0.57
PTPRF-214ENST00000496043 FAM110BQ8TC76 370 aa11.52□□□□□ -0.57
PTPRF-214ENST00000496043 AENQ8WTP8 325 aaKnown RBP11.52□□□□□ -0.57
PTPRF-214ENST00000496043 HOXB13Q92826 284 aaPredicted RBP11.52□□□□□ -0.57
PTPRF-214ENST00000496043 C1GALT1C1Q96EU7 318 aa11.52□□□□□ -0.57
PTPRF-214ENST00000496043 RMND5BQ96G75 393 aaPredicted RBP11.52□□□□□ -0.57
PTPRF-214ENST00000496043 TMEM109Q9BVC6 243 aa11.52□□□□□ -0.57
PTPRF-214ENST00000496043 RTN4RQ9BZR6 473 aa11.52□□□□□ -0.57
PTPRF-214ENST00000496043 STOML1Q9UBI4 398 aa11.52□□□□□ -0.57
PTPRF-214ENST00000496043 ATP6V1HQ9UI12 483 aa11.52□□□□□ -0.57
PTPRF-214ENST00000496043 CCDC168Q8NDH2 2452 aa11.51□□□□□ -0.57
PTPRF-214ENST00000496043 MED12Q93074 2177 aa11.51□□□□□ -0.57
PTPRF-214ENST00000496043 GIMAP1-GIMAP5A0A087WTJ2 511 aa11.51□□□□□ -0.57
PTPRF-214ENST00000496043 IGLV3-32A0A0A0MS00 114 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms