RNA–Protein interactions for RNA: ENST00000491659.5

USP39-217, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 648 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-217ENST00000491659 DSCR4P56555 118 aaPredicted RBP13.71□□□□□ -0.21
USP39-217ENST00000491659 GANABQ14697 944 aaKnown RBP13.71□□□□□ -0.21
USP39-217ENST00000491659 SMU1Q2TAY7 513 aa13.71□□□□□ -0.21
USP39-217ENST00000491659 NSUN5P2Q63ZY6 315 aa13.71□□□□□ -0.21
USP39-217ENST00000491659 MFSD12Q6NUT3 480 aa13.71□□□□□ -0.21
USP39-217ENST00000491659 ZCCHC12Q6PEW1 402 aa13.71□□□□□ -0.21
USP39-217ENST00000491659 TRIM42Q8IWZ5 723 aa13.71□□□□□ -0.21
USP39-217ENST00000491659 COX18Q8N8Q8 333 aa13.71□□□□□ -0.21
USP39-217ENST00000491659 ANKRD42Q8N9B4 389 aa13.71□□□□□ -0.21
USP39-217ENST00000491659 ACBD4Q8NC06 268 aa13.71□□□□□ -0.21
USP39-217ENST00000491659 JADE3Q92613 823 aa13.71□□□□□ -0.21
USP39-217ENST00000491659 HOXB13Q92826 284 aaPredicted RBP13.71□□□□□ -0.21
USP39-217ENST00000491659 FAM120BQ96EK7 910 aaKnown RBP13.71□□□□□ -0.21
USP39-217ENST00000491659 GIMAP5Q96F15 307 aa13.71□□□□□ -0.21
USP39-217ENST00000491659 CHMP6Q96FZ7 201 aa13.71□□□□□ -0.21
USP39-217ENST00000491659 PPP1R36Q96LQ0 422 aa13.71□□□□□ -0.21
USP39-217ENST00000491659 PTGES2Q9H7Z7 377 aa13.71□□□□□ -0.21
USP39-217ENST00000491659 ZNF395Q9H8N7 513 aaPredicted RBP13.71□□□□□ -0.21
USP39-217ENST00000491659 NEUROD4Q9HD90 331 aa13.71□□□□□ -0.21
USP39-217ENST00000491659 NPDC1Q9NQX5 325 aaPredicted RBP13.71□□□□□ -0.21
USP39-217ENST00000491659 ASIC5Q9NY37 505 aa13.71□□□□□ -0.21
USP39-217ENST00000491659 FLRT3Q9NZU0 649 aa13.71□□□□□ -0.21
USP39-217ENST00000491659 MRPS18CQ9Y3D5 142 aaKnown RBP13.71□□□□□ -0.21
USP39-217ENST00000491659 SNX8Q9Y5X2 465 aa13.71□□□□□ -0.21
USP39-217ENST00000491659 PKDREJQ9NTG1 2253 aa13.71□□□□□ -0.21
USP39-217ENST00000491659 CD8B2A6NJW9 211 aa13.7□□□□□ -0.22
USP39-217ENST00000491659 UTS2O95399 124 aa13.7□□□□□ -0.22
USP39-217ENST00000491659 ALOX5P09917 674 aa13.7□□□□□ -0.22
USP39-217ENST00000491659 G6PDP11413 515 aa13.7□□□□□ -0.22
USP39-217ENST00000491659 IGFBP2P18065 325 aa13.7□□□□□ -0.22
USP39-217ENST00000491659 TCEA1P23193 301 aaKnown RBP13.7□□□□□ -0.22
USP39-217ENST00000491659 TIMP3P35625 211 aa13.7□□□□□ -0.22
USP39-217ENST00000491659 MAP3K8P41279 467 aa13.7□□□□□ -0.22
USP39-217ENST00000491659 GFRA1P56159 465 aa13.7□□□□□ -0.22
USP39-217ENST00000491659 WNT3P56703 355 aa13.7□□□□□ -0.22
USP39-217ENST00000491659 EMX2Q04743 252 aa13.7□□□□□ -0.22
USP39-217ENST00000491659 STX3Q13277 289 aa13.7□□□□□ -0.22
USP39-217ENST00000491659 MPP2Q14168 576 aa13.7□□□□□ -0.22
USP39-217ENST00000491659 GRAMD1BQ3KR37 738 aa13.7□□□□□ -0.22
USP39-217ENST00000491659 LSM12Q3MHD2 195 aaKnown RBP13.7□□□□□ -0.22
USP39-217ENST00000491659 SPDYE7PQ495Y7 208 aa13.7□□□□□ -0.22
USP39-217ENST00000491659 SEM1Q6ZVN7 128 aa13.7□□□□□ -0.22
USP39-217ENST00000491659 KRTCAP2Q8N6L1 136 aa13.7□□□□□ -0.22
USP39-217ENST00000491659 FADS6Q8N9I5 356 aa13.7□□□□□ -0.22
USP39-217ENST00000491659 TNIP2Q8NFZ5 429 aa13.7□□□□□ -0.22
USP39-217ENST00000491659 OR2M3Q8NG83 312 aa13.7□□□□□ -0.22
USP39-217ENST00000491659 OR56A1Q8NGH5 318 aa13.7□□□□□ -0.22
USP39-217ENST00000491659 ZPLD1Q8TCW7 415 aa13.7□□□□□ -0.22
USP39-217ENST00000491659 OR5P2Q8WZ92 322 aa13.7□□□□□ -0.22
USP39-217ENST00000491659 TREX2Q9BQ50 279 aaPredicted RBP13.7□□□□□ -0.22
USP39-217ENST00000491659 DUSP26Q9BV47 211 aa13.7□□□□□ -0.22
USP39-217ENST00000491659 BHLHE41Q9C0J9 482 aaPredicted RBP13.7□□□□□ -0.22
USP39-217ENST00000491659 DSN1Q9H410 356 aa13.7□□□□□ -0.22
USP39-217ENST00000491659 HHATLQ9HCP6 504 aa13.7□□□□□ -0.22
USP39-217ENST00000491659 SIRT3Q9NTG7 399 aaPredicted RBP13.7□□□□□ -0.22
USP39-217ENST00000491659 RPH3AQ9Y2J0 694 aaPredicted RBP13.7□□□□□ -0.22
USP39-217ENST00000491659 KIAA1549Q9HCM3 1950 aa13.7□□□□□ -0.22
USP39-217ENST00000491659 MBD3L4A6NDZ8 208 aaPredicted RBP13.69□□□□□ -0.22
USP39-217ENST00000491659 MBD3L3A6NE82 208 aaPredicted RBP13.69□□□□□ -0.22
USP39-217ENST00000491659 MBD3L5A6NJ08 208 aaPredicted RBP13.69□□□□□ -0.22
USP39-217ENST00000491659 C17orf51A8MQB3 221 aa13.69□□□□□ -0.22
USP39-217ENST00000491659 KDM4EB2RXH2 506 aaPredicted RBP13.69□□□□□ -0.22
USP39-217ENST00000491659 CFLARO15519 480 aa13.69□□□□□ -0.22
USP39-217ENST00000491659 ANGPTL1O95841 491 aa13.69□□□□□ -0.22
USP39-217ENST00000491659 C6orf47O95873 294 aa13.69□□□□□ -0.22
USP39-217ENST00000491659 IGKV1D-16P01601 117 aa13.69□□□□□ -0.22
USP39-217ENST00000491659 KRT16P08779 473 aa13.69□□□□□ -0.22
USP39-217ENST00000491659 CPN1P15169 458 aa13.69□□□□□ -0.22
USP39-217ENST00000491659 HK1P19367 917 aa13.69□□□□□ -0.22
USP39-217ENST00000491659 BMP5P22003 454 aa13.69□□□□□ -0.22
USP39-217ENST00000491659 CHMP24386 653 aa13.69□□□□□ -0.22
USP39-217ENST00000491659 CEACAM8P31997 349 aaPredicted RBP13.69□□□□□ -0.22
USP39-217ENST00000491659 C21orf58P58505 322 aa13.69□□□□□ -0.22
USP39-217ENST00000491659 SRYQ05066 204 aa13.69□□□□□ -0.22
USP39-217ENST00000491659 BST1Q10588 318 aa13.69□□□□□ -0.22
USP39-217ENST00000491659 TP53BP2Q13625 1128 aa13.69□□□□□ -0.22
USP39-217ENST00000491659 DUSP5Q16690 384 aa13.69□□□□□ -0.22
USP39-217ENST00000491659 RAET1LQ5VY80 246 aa13.69□□□□□ -0.22
USP39-217ENST00000491659 MARCH3Q86UD3 253 aa13.69□□□□□ -0.22
USP39-217ENST00000491659 LIX1LQ8IVB5 337 aa13.69□□□□□ -0.22
USP39-217ENST00000491659 SLC16A11Q8NCK7 471 aa13.69□□□□□ -0.22
USP39-217ENST00000491659 NAXEQ8NCW5 288 aa13.69□□□□□ -0.22
USP39-217ENST00000491659 MBD3L2Q8NHZ7 208 aaPredicted RBP13.69□□□□□ -0.22
USP39-217ENST00000491659 SFXN5Q8TD22 340 aa13.69□□□□□ -0.22
USP39-217ENST00000491659 MOAP1Q96BY2 351 aa13.69□□□□□ -0.22
USP39-217ENST00000491659 COQ8BQ96D53 544 aa13.69□□□□□ -0.22
USP39-217ENST00000491659 C14orf79Q96F83 325 aa13.69□□□□□ -0.22
USP39-217ENST00000491659 LRRC46Q96FV0 321 aa13.69□□□□□ -0.22
USP39-217ENST00000491659 C16orf58Q96GQ5 468 aa13.69□□□□□ -0.22
USP39-217ENST00000491659 STACQ99469 402 aa13.69□□□□□ -0.22
USP39-217ENST00000491659 SORT1Q99523 831 aa13.69□□□□□ -0.22
USP39-217ENST00000491659 YIPF4Q9BSR8 244 aa13.69□□□□□ -0.22
USP39-217ENST00000491659 C20orf27Q9GZN8 174 aa13.69□□□□□ -0.22
USP39-217ENST00000491659 AKTIPQ9H8T0 292 aa13.69□□□□□ -0.22
USP39-217ENST00000491659 CALHM2Q9HA72 323 aa13.69□□□□□ -0.22
USP39-217ENST00000491659 SLC24A3Q9HC58 644 aa13.69□□□□□ -0.22
USP39-217ENST00000491659 MED11Q9P086 117 aa13.69□□□□□ -0.22
USP39-217ENST00000491659 HAO1Q9UJM8 370 aa13.69□□□□□ -0.22
USP39-217ENST00000491659 INTS1Q8N201 2190 aaKnown RBP13.69□□□□□ -0.22
USP39-217ENST00000491659 DOCK7Q96N67 2140 aa13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms