RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 THUMPD3Q9BV44 507 aaKnown RBP13.57□□□□□ -0.24
COL9A3-209ENST00000469852 RTN4RQ9BZR6 473 aa13.57□□□□□ -0.24
COL9A3-209ENST00000469852 PIF1Q9H611 641 aa13.57□□□□□ -0.24
COL9A3-209ENST00000469852 ASH1LQ9NR48 2969 aaKnown RBP13.57□□□□□ -0.24
COL9A3-209ENST00000469852 PINLYPA6NC86 204 aa13.56□□□□□ -0.24
COL9A3-209ENST00000469852 EVPLLA8MZ36 301 aa13.56□□□□□ -0.24
COL9A3-209ENST00000469852 NME4O00746 187 aa13.56□□□□□ -0.24
COL9A3-209ENST00000469852 NME2P1O60361 137 aa13.56□□□□□ -0.24
COL9A3-209ENST00000469852 UTS2O95399 124 aa13.56□□□□□ -0.24
COL9A3-209ENST00000469852 H6PDO95479 791 aa13.56□□□□□ -0.24
COL9A3-209ENST00000469852 BCHEP06276 602 aa13.56□□□□□ -0.24
COL9A3-209ENST00000469852 SP1P08047 785 aa13.56□□□□□ -0.24
COL9A3-209ENST00000469852 TFPTP0C1Z6 253 aa13.56□□□□□ -0.24
COL9A3-209ENST00000469852 ESRRAP11474 423 aaPredicted RBP13.56□□□□□ -0.24
COL9A3-209ENST00000469852 NME2P22392 152 aa13.56□□□□□ -0.24
COL9A3-209ENST00000469852 KRT20P35900 424 aa13.56□□□□□ -0.24
COL9A3-209ENST00000469852 CASP3P42574 277 aa13.56□□□□□ -0.24
COL9A3-209ENST00000469852 GPR85P60893 370 aa13.56□□□□□ -0.24
COL9A3-209ENST00000469852 PSPHP78330 225 aa13.56□□□□□ -0.24
COL9A3-209ENST00000469852 SLC25A3Q00325 362 aa13.56□□□□□ -0.24
COL9A3-209ENST00000469852 ART3Q13508 389 aa13.56□□□□□ -0.24
COL9A3-209ENST00000469852 ZNF169Q14929 603 aaPredicted RBP13.56□□□□□ -0.24
COL9A3-209ENST00000469852 ZNF766Q5HY98 468 aa13.56□□□□□ -0.24
COL9A3-209ENST00000469852 RPS26P11Q5JNZ5 115 aaPredicted RBP13.56□□□□□ -0.24
COL9A3-209ENST00000469852 TYW3Q6IPR3 259 aaKnown RBP13.56□□□□□ -0.24
COL9A3-209ENST00000469852 SLC25A25Q6KCM7 469 aa13.56□□□□□ -0.24
COL9A3-209ENST00000469852 C6orf89Q6UWU4 347 aa13.56□□□□□ -0.24
COL9A3-209ENST00000469852 APOOLQ6UXV4 268 aa13.56□□□□□ -0.24
COL9A3-209ENST00000469852 FRRS1Q6ZNA5 592 aa13.56□□□□□ -0.24
COL9A3-209ENST00000469852 RINLQ6ZS11 566 aa13.56□□□□□ -0.24
COL9A3-209ENST00000469852 NUP54Q7Z3B4 507 aa13.56□□□□□ -0.24
COL9A3-209ENST00000469852 GALNTL5Q7Z4T8 443 aa13.56□□□□□ -0.24
COL9A3-209ENST00000469852 SLC15A3Q8IY34 581 aa13.56□□□□□ -0.24
COL9A3-209ENST00000469852 Q8NA96 180 aa13.56□□□□□ -0.24
COL9A3-209ENST00000469852 GOLM1Q8NBJ4 401 aa13.56□□□□□ -0.24
COL9A3-209ENST00000469852 OR4C3Q8NH37 302 aa13.56□□□□□ -0.24
COL9A3-209ENST00000469852 OR10A6Q8NH74 314 aa13.56□□□□□ -0.24
COL9A3-209ENST00000469852 GRHL3Q8TE85 626 aa13.56□□□□□ -0.24
COL9A3-209ENST00000469852 SLC38A5Q8WUX1 472 aa13.56□□□□□ -0.24
COL9A3-209ENST00000469852 RNF138Q8WVD3 245 aa13.56□□□□□ -0.24
COL9A3-209ENST00000469852 WBP1Q96G27 269 aa13.56□□□□□ -0.24
COL9A3-209ENST00000469852 ZNF350Q9GZX5 532 aa13.56□□□□□ -0.24
COL9A3-209ENST00000469852 SLC38A1Q9H2H9 487 aa13.56□□□□□ -0.24
COL9A3-209ENST00000469852 RAD21L1Q9H4I0 556 aa13.56□□□□□ -0.24
COL9A3-209ENST00000469852 GALNT9Q9HCQ5 603 aa13.56□□□□□ -0.24
COL9A3-209ENST00000469852 EXD2Q9NVH0 621 aa13.56□□□□□ -0.24
COL9A3-209ENST00000469852 KCNE5Q9UJ90 142 aa13.56□□□□□ -0.24
COL9A3-209ENST00000469852 MKLN1Q9UL63 735 aa13.56□□□□□ -0.24
COL9A3-209ENST00000469852 PCDHGB3Q9Y5G1 929 aa13.56□□□□□ -0.24
COL9A3-209ENST00000469852 ZNF462Q96JM2 2506 aa13.56□□□□□ -0.24
COL9A3-209ENST00000469852 FLNBO75369 2602 aaKnown RBP13.56□□□□□ -0.24
COL9A3-209ENST00000469852 NINQ8N4C6 2090 aa13.55□□□□□ -0.24
COL9A3-209ENST00000469852 TRAV17A0A0B4J275 112 aa13.55□□□□□ -0.24
COL9A3-209ENST00000469852 C2orf72A6NCS6 295 aa13.55□□□□□ -0.24
COL9A3-209ENST00000469852 B4DXG7 233 aa13.55□□□□□ -0.24
COL9A3-209ENST00000469852 NPIPB9F8W1W9 429 aa13.55□□□□□ -0.24
COL9A3-209ENST00000469852 CDK2AP1O14519 115 aa13.55□□□□□ -0.24
COL9A3-209ENST00000469852 FADS1O60427 444 aa13.55□□□□□ -0.24
COL9A3-209ENST00000469852 ABCB7O75027 752 aa13.55□□□□□ -0.24
COL9A3-209ENST00000469852 AGR2O95994 175 aa13.55□□□□□ -0.24
COL9A3-209ENST00000469852 ARAFP10398 606 aa13.55□□□□□ -0.24
COL9A3-209ENST00000469852 CPOXP36551 454 aa13.55□□□□□ -0.24
COL9A3-209ENST00000469852 MAGEA8P43361 318 aa13.55□□□□□ -0.24
COL9A3-209ENST00000469852 DNASE1L1P49184 302 aa13.55□□□□□ -0.24
COL9A3-209ENST00000469852 ANXA11P50995 505 aaKnown RBP13.55□□□□□ -0.24
COL9A3-209ENST00000469852 SLC7A2P52569 658 aa13.55□□□□□ -0.24
COL9A3-209ENST00000469852 PSME3P61289 254 aa13.55□□□□□ -0.24
COL9A3-209ENST00000469852 PMP22Q01453 160 aa13.55□□□□□ -0.24
COL9A3-209ENST00000469852 CHRNEQ04844 493 aa13.55□□□□□ -0.24
COL9A3-209ENST00000469852 EFR3AQ14156 821 aa13.55□□□□□ -0.24
COL9A3-209ENST00000469852 INPP5JQ15735 1006 aaPredicted RBP13.55□□□□□ -0.24
COL9A3-209ENST00000469852 GPR68Q15743 365 aa13.55□□□□□ -0.24
COL9A3-209ENST00000469852 GPAT3Q53EU6 434 aa13.55□□□□□ -0.24
COL9A3-209ENST00000469852 GCNT6Q5T4J0 391 aa13.55□□□□□ -0.24
COL9A3-209ENST00000469852 ATAD3BQ5T9A4 648 aa13.55□□□□□ -0.24
COL9A3-209ENST00000469852 SLC22A10Q63ZE4 541 aa13.55□□□□□ -0.24
COL9A3-209ENST00000469852 NET1Q7Z628 596 aaPredicted RBP13.55□□□□□ -0.24
COL9A3-209ENST00000469852 CALHM3Q86XJ0 350 aa13.55□□□□□ -0.24
COL9A3-209ENST00000469852 SULF2Q8IWU5 870 aa13.55□□□□□ -0.24
COL9A3-209ENST00000469852 ZZZ3Q8IYH5 903 aa13.55□□□□□ -0.24
COL9A3-209ENST00000469852 DND1Q8IYX4 353 aaKnown RBP13.55□□□□□ -0.24
COL9A3-209ENST00000469852 FBXW8Q8N3Y1 598 aa13.55□□□□□ -0.24
COL9A3-209ENST00000469852 RBM15BQ8NDT2 890 aaKnown RBP13.55□□□□□ -0.24
COL9A3-209ENST00000469852 NFKBIDQ8NI38 313 aa13.55□□□□□ -0.24
COL9A3-209ENST00000469852 NTNG2Q96CW9 530 aa13.55□□□□□ -0.24
COL9A3-209ENST00000469852 ZG16BQ96DA0 208 aa13.55□□□□□ -0.24
COL9A3-209ENST00000469852 TMEM19Q96HH6 336 aa13.55□□□□□ -0.24
COL9A3-209ENST00000469852 SGCZQ96LD1 299 aa13.55□□□□□ -0.24
COL9A3-209ENST00000469852 ZNF583Q96ND8 569 aa13.55□□□□□ -0.24
COL9A3-209ENST00000469852 QRSL1Q9H0R6 528 aaKnown RBP13.55□□□□□ -0.24
COL9A3-209ENST00000469852 A4GALTQ9NPC4 353 aa13.55□□□□□ -0.24
COL9A3-209ENST00000469852 TIMMDC1Q9NPL8 285 aa13.55□□□□□ -0.24
COL9A3-209ENST00000469852 ZKSCAN7Q9P0L1 754 aaPredicted RBP13.55□□□□□ -0.24
COL9A3-209ENST00000469852 P2RX2Q9UBL9 471 aa13.55□□□□□ -0.24
COL9A3-209ENST00000469852 MRTO4Q9UKD2 239 aaKnown RBP13.55□□□□□ -0.24
COL9A3-209ENST00000469852 PACSIN3Q9UKS6 424 aa13.55□□□□□ -0.24
COL9A3-209ENST00000469852 CORO2BQ9UQ03 480 aa13.55□□□□□ -0.24
COL9A3-209ENST00000469852 B3GNT3Q9Y2A9 372 aa13.55□□□□□ -0.24
COL9A3-209ENST00000469852 TENM4Q6N022 2769 aa13.54□□□□□ -0.24
COL9A3-209ENST00000469852 NCKAP5O14513 1909 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms