RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 JSRP1Q96MG2 331 aaPredicted RBP10.94□□□□□ -0.66
VPS13D-204ENST00000469054 SLX1AQ9BQ83 275 aa10.94□□□□□ -0.66
VPS13D-204ENST00000469054 OSBPL11Q9BXB4 747 aa10.94□□□□□ -0.66
VPS13D-204ENST00000469054 GALNT9Q9HCQ5 603 aa10.94□□□□□ -0.66
VPS13D-204ENST00000469054 ZFP64Q9NPA5 681 aa10.94□□□□□ -0.66
VPS13D-204ENST00000469054 EXD2Q9NVH0 621 aa10.94□□□□□ -0.66
VPS13D-204ENST00000469054 FBXO34Q9NWN3 711 aa10.94□□□□□ -0.66
VPS13D-204ENST00000469054 FLRT3Q9NZU0 649 aa10.94□□□□□ -0.66
VPS13D-204ENST00000469054 BOKQ9UMX3 212 aaPredicted RBP10.94□□□□□ -0.66
VPS13D-204ENST00000469054 ABCG2Q9UNQ0 655 aa10.94□□□□□ -0.66
VPS13D-204ENST00000469054 CAPN7Q9Y6W3 813 aa10.94□□□□□ -0.66
VPS13D-204ENST00000469054 LRRC3CA6NJW4 275 aa10.93□□□□□ -0.66
VPS13D-204ENST00000469054 NPIPA5E9PKD4 350 aa10.93□□□□□ -0.66
VPS13D-204ENST00000469054 ACOT7O00154 380 aa10.93□□□□□ -0.66
VPS13D-204ENST00000469054 CLIC1O00299 241 aa10.93□□□□□ -0.66
VPS13D-204ENST00000469054 HMGN4O00479 90 aa10.93□□□□□ -0.66
VPS13D-204ENST00000469054 FADS1O60427 444 aa10.93□□□□□ -0.66
VPS13D-204ENST00000469054 WISP2O76076 250 aa10.93□□□□□ -0.66
VPS13D-204ENST00000469054 UNC5CO95185 931 aa10.93□□□□□ -0.66
VPS13D-204ENST00000469054 UTS2O95399 124 aa10.93□□□□□ -0.66
VPS13D-204ENST00000469054 ATP6V1C1P21283 382 aa10.93□□□□□ -0.66
VPS13D-204ENST00000469054 TBXA2RP21731 343 aa10.93□□□□□ -0.66
VPS13D-204ENST00000469054 MVDP53602 400 aa10.93□□□□□ -0.66
VPS13D-204ENST00000469054 IGFBP7Q16270 282 aa10.93□□□□□ -0.66
VPS13D-204ENST00000469054 GRAMD1BQ3KR37 738 aa10.93□□□□□ -0.66
VPS13D-204ENST00000469054 ARHGAP11BQ3KRB8 267 aa10.93□□□□□ -0.66
VPS13D-204ENST00000469054 COX20Q5RI15 118 aa10.93□□□□□ -0.66
VPS13D-204ENST00000469054 DDX59Q5T1V6 619 aaKnown RBP eCLIP10.93□□□□□ -0.66
VPS13D-204ENST00000469054 FNDC7Q5VTL7 733 aa10.93□□□□□ -0.66
VPS13D-204ENST00000469054 HEPHL1Q6MZM0 1159 aa10.93□□□□□ -0.66
VPS13D-204ENST00000469054 DLEU7Q6UYE1 221 aa10.93□□□□□ -0.66
VPS13D-204ENST00000469054 RETREG3Q86VR2 466 aa10.93□□□□□ -0.66
VPS13D-204ENST00000469054 SLC22A16Q86VW1 577 aa10.93□□□□□ -0.66
VPS13D-204ENST00000469054 SIAH3Q8IW03 269 aa10.93□□□□□ -0.66
VPS13D-204ENST00000469054 MSRB3Q8IXL7 192 aa10.93□□□□□ -0.66
VPS13D-204ENST00000469054 TMEM251Q8N6I4 163 aa10.93□□□□□ -0.66
VPS13D-204ENST00000469054 OR4C3Q8NH37 302 aa10.93□□□□□ -0.66
VPS13D-204ENST00000469054 ZNF597Q96LX8 424 aa10.93□□□□□ -0.66
VPS13D-204ENST00000469054 CCT8L2Q96SF2 557 aa10.93□□□□□ -0.66
VPS13D-204ENST00000469054 SDF2Q99470 211 aa10.93□□□□□ -0.66
VPS13D-204ENST00000469054 CCDC106Q9BWC9 280 aa10.93□□□□□ -0.66
VPS13D-204ENST00000469054 HOXD1Q9GZZ0 328 aa10.93□□□□□ -0.66
VPS13D-204ENST00000469054 UBQLN4Q9NRR5 601 aa10.93□□□□□ -0.66
VPS13D-204ENST00000469054 SLC25A37Q9NYZ2 338 aa10.93□□□□□ -0.66
VPS13D-204ENST00000469054 VAPAQ9P0L0 249 aa10.93□□□□□ -0.66
VPS13D-204ENST00000469054 ARMCX1Q9P291 453 aa10.93□□□□□ -0.66
VPS13D-204ENST00000469054 NPIPA1Q9UND3 350 aa10.93□□□□□ -0.66
VPS13D-204ENST00000469054 WIF1Q9Y5W5 379 aa10.93□□□□□ -0.66
VPS13D-204ENST00000469054 GMEB1Q9Y692 573 aa10.93□□□□□ -0.66
VPS13D-204ENST00000469054 SPENQ96T58 3664 aaKnown RBP10.93□□□□□ -0.66
VPS13D-204ENST00000469054 TRBV5-3A0A0A0MS03 114 aa10.92□□□□□ -0.66
VPS13D-204ENST00000469054 LOC100653049A0A140TA62 436 aa10.92□□□□□ -0.66
VPS13D-204ENST00000469054 PRAMEF27A3QJZ7 478 aa10.92□□□□□ -0.66
VPS13D-204ENST00000469054 FAM166BA8MTA8 275 aa10.92□□□□□ -0.66
VPS13D-204ENST00000469054 FBP2O00757 339 aa10.92□□□□□ -0.66
VPS13D-204ENST00000469054 GNB5O14775 395 aa10.92□□□□□ -0.66
VPS13D-204ENST00000469054 TFECO14948 347 aaPredicted RBP10.92□□□□□ -0.66
VPS13D-204ENST00000469054 SHOX2O60902 331 aaPredicted RBP10.92□□□□□ -0.66
VPS13D-204ENST00000469054 STX11O75558 287 aa10.92□□□□□ -0.66
VPS13D-204ENST00000469054 KRT34O76011 436 aa10.92□□□□□ -0.66
VPS13D-204ENST00000469054 OXSR1O95747 527 aaPredicted RBP10.92□□□□□ -0.66
VPS13D-204ENST00000469054 NGFRP08138 427 aa10.92□□□□□ -0.66
VPS13D-204ENST00000469054 EDN3P14138 238 aa10.92□□□□□ -0.66
VPS13D-204ENST00000469054 PLA2G2AP14555 144 aa10.92□□□□□ -0.66
VPS13D-204ENST00000469054 ELAVL4P26378 380 aaKnown RBP10.92□□□□□ -0.66
VPS13D-204ENST00000469054 CRATP43155 626 aa10.92□□□□□ -0.66
VPS13D-204ENST00000469054 CLK3P49761 638 aaKnown RBP10.92□□□□□ -0.66
VPS13D-204ENST00000469054 TDGF1P3P51864 188 aa10.92□□□□□ -0.66
VPS13D-204ENST00000469054 GAS1P54826 345 aa10.92□□□□□ -0.66
VPS13D-204ENST00000469054 NFYCQ13952 458 aa10.92□□□□□ -0.66
VPS13D-204ENST00000469054 CYLC2Q14093 348 aaPredicted RBP10.92□□□□□ -0.66
VPS13D-204ENST00000469054 RGNQ15493 299 aa10.92□□□□□ -0.66
VPS13D-204ENST00000469054 KRTCAP3Q53RY4 240 aa10.92□□□□□ -0.66
VPS13D-204ENST00000469054 COQ5Q5HYK3 327 aa10.92□□□□□ -0.66
VPS13D-204ENST00000469054 TIGD3Q6B0B8 471 aa10.92□□□□□ -0.66
VPS13D-204ENST00000469054 BNC2Q6ZN30 1099 aaPredicted RBP10.92□□□□□ -0.66
VPS13D-204ENST00000469054 C16orf62Q7Z3J2 963 aa10.92□□□□□ -0.66
VPS13D-204ENST00000469054 MARCH3Q86UD3 253 aa10.92□□□□□ -0.66
VPS13D-204ENST00000469054 ATCAYQ86WG3 371 aa10.92□□□□□ -0.66
VPS13D-204ENST00000469054 SNX32Q86XE0 403 aa10.92□□□□□ -0.66
VPS13D-204ENST00000469054 FAM109AQ8N4B1 249 aa10.92□□□□□ -0.66
VPS13D-204ENST00000469054 WDSUB1Q8N9V3 476 aa10.92□□□□□ -0.66
VPS13D-204ENST00000469054 GALNT11Q8NCW6 608 aa10.92□□□□□ -0.66
VPS13D-204ENST00000469054 ST6GALNAC3Q8NDV1 305 aa10.92□□□□□ -0.66
VPS13D-204ENST00000469054 OR1J4Q8NGS1 313 aa10.92□□□□□ -0.66
VPS13D-204ENST00000469054 MARVELD3Q96A59 401 aa10.92□□□□□ -0.66
VPS13D-204ENST00000469054 GPR137Q96N19 417 aa10.92□□□□□ -0.66
VPS13D-204ENST00000469054 GNRHR2Q96P88 292 aa10.92□□□□□ -0.66
VPS13D-204ENST00000469054 TBL1XR1Q9BZK7 514 aa10.92□□□□□ -0.66
VPS13D-204ENST00000469054 ZNF350Q9GZX5 532 aa10.92□□□□□ -0.66
VPS13D-204ENST00000469054 MYLK2Q9H1R3 596 aa10.92□□□□□ -0.66
VPS13D-204ENST00000469054 TSPAN10Q9H1Z9 355 aaPredicted RBP10.92□□□□□ -0.66
VPS13D-204ENST00000469054 RAD21L1Q9H4I0 556 aa10.92□□□□□ -0.66
VPS13D-204ENST00000469054 ZDHHC11Q9H8X9 412 aa10.92□□□□□ -0.66
VPS13D-204ENST00000469054 SDHAF3Q9NRP4 125 aa10.92□□□□□ -0.66
VPS13D-204ENST00000469054 B4GALT7Q9UBV7 327 aa10.92□□□□□ -0.66
VPS13D-204ENST00000469054 NIPSNAP3AQ9UFN0 247 aaPredicted RBP10.92□□□□□ -0.66
VPS13D-204ENST00000469054 LIPT1Q9Y234 373 aa10.92□□□□□ -0.66
VPS13D-204ENST00000469054 ARL2BPQ9Y2Y0 163 aa10.92□□□□□ -0.66
VPS13D-204ENST00000469054 NUP214P35658 2090 aaPredicted RBP10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms