RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 ASB15Q8WXK1 588 aa8.35□□□□□ -1.07
SYNE1-217ENST00000466159 SLC41A3Q96GZ6 507 aa8.35□□□□□ -1.07
SYNE1-217ENST00000466159 SLC38A2Q96QD8 506 aa8.35□□□□□ -1.07
SYNE1-217ENST00000466159 SERINC2Q96SA4 455 aa8.35□□□□□ -1.07
SYNE1-217ENST00000466159 MTHFD2LQ9H903 347 aaPredicted RBP8.35□□□□□ -1.07
SYNE1-217ENST00000466159 FGF20Q9NP95 211 aaPredicted RBP8.35□□□□□ -1.07
SYNE1-217ENST00000466159 MRPS18AQ9NVS2 196 aaKnown RBP8.35□□□□□ -1.07
SYNE1-217ENST00000466159 NTMQ9P121 344 aa8.35□□□□□ -1.07
SYNE1-217ENST00000466159 CLEC1BQ9P126 229 aa8.35□□□□□ -1.07
SYNE1-217ENST00000466159 B3GALT2O43825 422 aa8.34□□□□□ -1.07
SYNE1-217ENST00000466159 SNX4O95219 450 aa8.34□□□□□ -1.07
SYNE1-217ENST00000466159 SLC2A10O95528 541 aa8.34□□□□□ -1.07
SYNE1-217ENST00000466159 MSL3P1P0C860 447 aa8.34□□□□□ -1.07
SYNE1-217ENST00000466159 CPMP14384 443 aa8.34□□□□□ -1.07
SYNE1-217ENST00000466159 IFNA8P32881 189 aa8.34□□□□□ -1.07
SYNE1-217ENST00000466159 TPTEP56180 551 aa8.34□□□□□ -1.07
SYNE1-217ENST00000466159 RPS25P62851 125 aaKnown RBP8.34□□□□□ -1.07
SYNE1-217ENST00000466159 BNC1Q01954 994 aa8.34□□□□□ -1.07
SYNE1-217ENST00000466159 MAPK14Q16539 360 aa8.34□□□□□ -1.07
SYNE1-217ENST00000466159 DECR1Q16698 335 aa8.34□□□□□ -1.07
SYNE1-217ENST00000466159 MINDY4Q4G0A6 757 aa8.34□□□□□ -1.07
SYNE1-217ENST00000466159 CCBE1Q6UXH8 406 aaPredicted RBP8.34□□□□□ -1.07
SYNE1-217ENST00000466159 SPATC1Q76KD6 591 aa8.34□□□□□ -1.07
SYNE1-217ENST00000466159 LAPTM4BQ86VI4 370 aa8.34□□□□□ -1.07
SYNE1-217ENST00000466159 GALNT12Q8IXK2 581 aa8.34□□□□□ -1.07
SYNE1-217ENST00000466159 GJD3Q8N144 294 aa8.34□□□□□ -1.07
SYNE1-217ENST00000466159 OR8H2Q8N162 312 aa8.34□□□□□ -1.07
SYNE1-217ENST00000466159 FRMD1Q8N878 549 aa8.34□□□□□ -1.07
SYNE1-217ENST00000466159 ZFP41Q8N8Y5 198 aa8.34□□□□□ -1.07
SYNE1-217ENST00000466159 OR4F15Q8NGB8 312 aa8.34□□□□□ -1.07
SYNE1-217ENST00000466159 PIK3R3Q92569 461 aa8.34□□□□□ -1.07
SYNE1-217ENST00000466159 MRPL38Q96DV4 380 aaKnown RBP8.34□□□□□ -1.07
SYNE1-217ENST00000466159 SDF2Q99470 211 aa8.34□□□□□ -1.07
SYNE1-217ENST00000466159 TM9SF2Q99805 663 aa8.34□□□□□ -1.07
SYNE1-217ENST00000466159 S1PR5Q9H228 398 aa8.34□□□□□ -1.07
SYNE1-217ENST00000466159 FBXO34Q9NWN3 711 aa8.34□□□□□ -1.07
SYNE1-217ENST00000466159 TOR4AQ9NXH8 423 aa8.34□□□□□ -1.07
SYNE1-217ENST00000466159 ACTR10Q9NZ32 417 aa8.34□□□□□ -1.07
SYNE1-217ENST00000466159 MUTYHQ9UIF7 546 aa8.34□□□□□ -1.07
SYNE1-217ENST00000466159 PHF11Q9UIL8 331 aa8.34□□□□□ -1.07
SYNE1-217ENST00000466159 PILRAQ9UKJ1 303 aa8.34□□□□□ -1.07
SYNE1-217ENST00000466159 SLC7A7Q9UM01 511 aa8.34□□□□□ -1.07
SYNE1-217ENST00000466159 SLC22A7Q9Y694 548 aa8.34□□□□□ -1.07
SYNE1-217ENST00000466159 PRUNE2Q8WUY3 3088 aa8.34□□□□□ -1.07
SYNE1-217ENST00000466159 NPIPA5A0A0B4J1W7 369 aa8.34□□□□□ -1.07
SYNE1-217ENST00000466159 KDM4EB2RXH2 506 aaPredicted RBP8.34□□□□□ -1.07
SYNE1-217ENST00000466159 NPIPA7E9PJI5 369 aa8.34□□□□□ -1.07
SYNE1-217ENST00000466159 CDC42EP2O14613 210 aa8.34□□□□□ -1.07
SYNE1-217ENST00000466159 SNPHO15079 494 aa8.34□□□□□ -1.07
SYNE1-217ENST00000466159 SURF4O15260 269 aa8.34□□□□□ -1.07
SYNE1-217ENST00000466159 TNFSF14O43557 240 aa8.34□□□□□ -1.07
SYNE1-217ENST00000466159 APBB3O95704 486 aa8.34□□□□□ -1.07
SYNE1-217ENST00000466159 GKN3PP0CG01 181 aa8.34□□□□□ -1.07
SYNE1-217ENST00000466159 LIMS3P0CW19 117 aa8.34□□□□□ -1.07
SYNE1-217ENST00000466159 LIMS4P0CW20 117 aa8.34□□□□□ -1.07
SYNE1-217ENST00000466159 NPIPA8P0DM63 369 aa8.34□□□□□ -1.07
SYNE1-217ENST00000466159 PRG2P13727 222 aa8.34□□□□□ -1.07
SYNE1-217ENST00000466159 HNRNPA2B1P22626 353 aaKnown RBP8.34□□□□□ -1.07
SYNE1-217ENST00000466159 FPR3P25089 353 aa8.34□□□□□ -1.07
SYNE1-217ENST00000466159 TLX1P31314 330 aaPredicted RBP8.34□□□□□ -1.07
SYNE1-217ENST00000466159 LSSP48449 732 aa8.34□□□□□ -1.07
SYNE1-217ENST00000466159 SRP54P61011 504 aaKnown RBP8.34□□□□□ -1.07
SYNE1-217ENST00000466159 SELENBP1Q13228 472 aa8.34□□□□□ -1.07
SYNE1-217ENST00000466159 LARS2Q15031 903 aaKnown RBP8.34□□□□□ -1.07
SYNE1-217ENST00000466159 ALG11Q2TAA5 492 aa8.34□□□□□ -1.07
SYNE1-217ENST00000466159 ARHGAP11BQ3KRB8 267 aa8.34□□□□□ -1.07
SYNE1-217ENST00000466159 TMEM92Q6UXU6 159 aa8.34□□□□□ -1.07
SYNE1-217ENST00000466159 USP53Q70EK8 1073 aa8.34□□□□□ -1.07
SYNE1-217ENST00000466159 PEX5LQ8IYB4 626 aa8.34□□□□□ -1.07
SYNE1-217ENST00000466159 SYT14Q8NB59 555 aa8.34□□□□□ -1.07
SYNE1-217ENST00000466159 POGLUT1Q8NBL1 392 aa8.34□□□□□ -1.07
SYNE1-217ENST00000466159 TMEM52Q8NDY8 209 aa8.34□□□□□ -1.07
SYNE1-217ENST00000466159 BBS1Q8NFJ9 593 aa8.34□□□□□ -1.07
SYNE1-217ENST00000466159 OR5T3Q8NGG3 340 aa8.34□□□□□ -1.07
SYNE1-217ENST00000466159 ASB12Q8WXK4 309 aa8.34□□□□□ -1.07
SYNE1-217ENST00000466159 FAM3CQ92520 227 aa8.34□□□□□ -1.07
SYNE1-217ENST00000466159 NR4A3Q92570 626 aa8.34□□□□□ -1.07
SYNE1-217ENST00000466159 ARSGQ96EG1 525 aa8.34□□□□□ -1.07
SYNE1-217ENST00000466159 C1GALT1C1Q96EU7 318 aa8.34□□□□□ -1.07
SYNE1-217ENST00000466159 ANKRD19PQ9H560 264 aa8.34□□□□□ -1.07
SYNE1-217ENST00000466159 ADAP2Q9NPF8 381 aa8.34□□□□□ -1.07
SYNE1-217ENST00000466159 EVA1BQ9NVM1 165 aa8.34□□□□□ -1.07
SYNE1-217ENST00000466159 IL20Q9NYY1 176 aa8.34□□□□□ -1.07
SYNE1-217ENST00000466159 SCML1Q9UN30 329 aa8.34□□□□□ -1.07
SYNE1-217ENST00000466159 SF3B6Q9Y3B4 125 aaKnown RBP8.34□□□□□ -1.07
SYNE1-217ENST00000466159 CSNK1G3Q9Y6M4 447 aa8.34□□□□□ -1.07
SYNE1-217ENST00000466159 V9GYH0 126 aa8.34□□□□□ -1.07
SYNE1-217ENST00000466159 TRIOO75962 3097 aa8.34□□□□□ -1.08
SYNE1-217ENST00000466159 TMEM129A0AVI4 362 aa8.33□□□□□ -1.08
SYNE1-217ENST00000466159 LRRC72A6NJI9 287 aa8.33□□□□□ -1.08
SYNE1-217ENST00000466159 SNTNA6NMZ2 147 aa8.33□□□□□ -1.08
SYNE1-217ENST00000466159 H0YGG7 62 aa8.33□□□□□ -1.08
SYNE1-217ENST00000466159 H3BQ06 376 aaPredicted RBP8.33□□□□□ -1.08
SYNE1-217ENST00000466159 KLF4O43474 513 aa8.33□□□□□ -1.08
SYNE1-217ENST00000466159 LALBAP00709 142 aa8.33□□□□□ -1.08
SYNE1-217ENST00000466159 NDUFV2P19404 249 aa8.33□□□□□ -1.08
SYNE1-217ENST00000466159 FUT1P19526 365 aa8.33□□□□□ -1.08
SYNE1-217ENST00000466159 AZGP1P25311 298 aaKnown RBP8.33□□□□□ -1.08
SYNE1-217ENST00000466159 SDC2P34741 201 aa8.33□□□□□ -1.08
SYNE1-217ENST00000466159 STAT5AP42229 794 aa8.33□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms