RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 ODF4Q2M2E3 257 aa10.92□□□□□ -0.66
NPHP4-204ENST00000460696 FAHD1Q6P587 224 aa10.92□□□□□ -0.66
NPHP4-204ENST00000460696 ZNF547Q8IVP9 402 aa10.92□□□□□ -0.66
NPHP4-204ENST00000460696 SAMD12Q8N8I0 201 aa10.92□□□□□ -0.66
NPHP4-204ENST00000460696 ANKRD53Q8N9V6 530 aa10.92□□□□□ -0.66
NPHP4-204ENST00000460696 SLC25A36Q96CQ1 311 aa10.92□□□□□ -0.66
NPHP4-204ENST00000460696 ARSGQ96EG1 525 aa10.92□□□□□ -0.66
NPHP4-204ENST00000460696 PEX11GQ96HA9 241 aa10.92□□□□□ -0.66
NPHP4-204ENST00000460696 TIMM29Q9BSF4 260 aa10.92□□□□□ -0.66
NPHP4-204ENST00000460696 EXTL2Q9UBQ6 330 aa10.92□□□□□ -0.66
NPHP4-204ENST00000460696 B3GNT3Q9Y2A9 372 aa10.92□□□□□ -0.66
NPHP4-204ENST00000460696 POM121BA6NF01 834 aa10.92□□□□□ -0.66
NPHP4-204ENST00000460696 HMGN4O00479 90 aa10.92□□□□□ -0.66
NPHP4-204ENST00000460696 ORC5O43913 435 aa10.92□□□□□ -0.66
NPHP4-204ENST00000460696 LILRB3O75022 631 aa10.92□□□□□ -0.66
NPHP4-204ENST00000460696 WBP4O75554 376 aaKnown RBP10.92□□□□□ -0.66
NPHP4-204ENST00000460696 HNRNPA2B1P22626 353 aaKnown RBP10.92□□□□□ -0.66
NPHP4-204ENST00000460696 MMP11P24347 488 aa10.92□□□□□ -0.66
NPHP4-204ENST00000460696 GBX2P52951 348 aaPredicted RBP10.92□□□□□ -0.66
NPHP4-204ENST00000460696 ILKQ13418 452 aa10.92□□□□□ -0.66
NPHP4-204ENST00000460696 ELOAQ14241 798 aaKnown RBP10.92□□□□□ -0.66
NPHP4-204ENST00000460696 TBRG1Q3YBR2 411 aa10.92□□□□□ -0.66
NPHP4-204ENST00000460696 ENTPD8Q5MY95 495 aa10.92□□□□□ -0.66
NPHP4-204ENST00000460696 STEAP3Q658P3 488 aa10.92□□□□□ -0.66
NPHP4-204ENST00000460696 BICRALQ6AI39 1079 aa10.92□□□□□ -0.66
NPHP4-204ENST00000460696 ABHD17CQ6PCB6 329 aa10.92□□□□□ -0.66
NPHP4-204ENST00000460696 FAM111BQ6SJ93 734 aa10.92□□□□□ -0.66
NPHP4-204ENST00000460696 Q8N402 240 aa10.92□□□□□ -0.66
NPHP4-204ENST00000460696 POMGNT2Q8NAT1 580 aa10.92□□□□□ -0.66
NPHP4-204ENST00000460696 SLC16A11Q8NCK7 471 aa10.92□□□□□ -0.66
NPHP4-204ENST00000460696 OR2L8Q8NGY9 312 aa10.92□□□□□ -0.66
NPHP4-204ENST00000460696 KLHDC7BQ96G42 594 aa10.92□□□□□ -0.66
NPHP4-204ENST00000460696 FRMD6Q96NE9 622 aa10.92□□□□□ -0.66
NPHP4-204ENST00000460696 MS4A4EQ96PG1 132 aa10.92□□□□□ -0.66
NPHP4-204ENST00000460696 HDAC8Q9BY41 377 aa10.92□□□□□ -0.66
NPHP4-204ENST00000460696 GABARAPL1Q9H0R8 117 aa10.92□□□□□ -0.66
NPHP4-204ENST00000460696 ACTR10Q9NZ32 417 aa10.92□□□□□ -0.66
NPHP4-204ENST00000460696 XKRYO14609 159 aa10.92□□□□□ -0.66
NPHP4-204ENST00000460696 KHNYNO15037 678 aaKnown RBP10.92□□□□□ -0.66
NPHP4-204ENST00000460696 MBTPS2O43462 519 aa10.92□□□□□ -0.66
NPHP4-204ENST00000460696 COQ9O75208 318 aa10.92□□□□□ -0.66
NPHP4-204ENST00000460696 MT-ND5P03915 603 aa10.92□□□□□ -0.66
NPHP4-204ENST00000460696 C6orf183Q5T699 404 aa10.92□□□□□ -0.66
NPHP4-204ENST00000460696 PROKR2Q8NFJ6 384 aa10.92□□□□□ -0.66
NPHP4-204ENST00000460696 LMX1AQ8TE12 382 aa10.92□□□□□ -0.66
NPHP4-204ENST00000460696 TRIM63Q969Q1 353 aa10.92□□□□□ -0.66
NPHP4-204ENST00000460696 CITED4Q96RK1 184 aa10.92□□□□□ -0.66
NPHP4-204ENST00000460696 DDX31Q9H8H2 851 aaKnown RBP10.92□□□□□ -0.66
NPHP4-204ENST00000460696 TMA7Q9Y2S6 64 aaKnown RBP10.92□□□□□ -0.66
NPHP4-204ENST00000460696 SCN3AQ9NY46 2000 aa10.91□□□□□ -0.66
NPHP4-204ENST00000460696 SVILO95425 2214 aa10.91□□□□□ -0.66
NPHP4-204ENST00000460696 A0A1W2PR48 441 aa10.91□□□□□ -0.66
NPHP4-204ENST00000460696 TMEM150CB9EJG8 249 aa10.91□□□□□ -0.66
NPHP4-204ENST00000460696 MCIDASD6RGH6 385 aa10.91□□□□□ -0.66
NPHP4-204ENST00000460696 DLL1O00548 723 aa10.91□□□□□ -0.66
NPHP4-204ENST00000460696 CASC3O15234 703 aaKnown RBP10.91□□□□□ -0.66
NPHP4-204ENST00000460696 NDUFB5O43674 189 aa10.91□□□□□ -0.66
NPHP4-204ENST00000460696 ZXDCQ2QGD7 858 aaPredicted RBP10.91□□□□□ -0.66
NPHP4-204ENST00000460696 FAAH2Q6GMR7 532 aa10.91□□□□□ -0.66
NPHP4-204ENST00000460696 PAQR6Q6TCH4 344 aa10.91□□□□□ -0.66
NPHP4-204ENST00000460696 Q6ZSR6 202 aa10.91□□□□□ -0.66
NPHP4-204ENST00000460696 NCCRP1Q6ZVX7 275 aaPredicted RBP10.91□□□□□ -0.66
NPHP4-204ENST00000460696 SPATC1Q76KD6 591 aa10.91□□□□□ -0.66
NPHP4-204ENST00000460696 NR4A3Q92570 626 aa10.91□□□□□ -0.66
NPHP4-204ENST00000460696 GAL3ST3Q96A11 431 aa10.91□□□□□ -0.66
NPHP4-204ENST00000460696 MED28Q9H204 178 aa10.91□□□□□ -0.66
NPHP4-204ENST00000460696 CPNE5Q9HCH3 593 aa10.91□□□□□ -0.66
NPHP4-204ENST00000460696 GNG8Q9UK08 70 aa10.91□□□□□ -0.66
NPHP4-204ENST00000460696 SPTBP11277 2137 aa10.91□□□□□ -0.66
NPHP4-204ENST00000460696 NYNRINQ9P2P1 1898 aaKnown RBP10.91□□□□□ -0.66
NPHP4-204ENST00000460696 SGK494L7N484 410 aa10.91□□□□□ -0.66
NPHP4-204ENST00000460696 RDH16O75452 317 aa10.91□□□□□ -0.66
NPHP4-204ENST00000460696 CSTAP01040 98 aa10.91□□□□□ -0.66
NPHP4-204ENST00000460696 EDNRAP25101 427 aa10.91□□□□□ -0.66
NPHP4-204ENST00000460696 ACSL1P33121 698 aa10.91□□□□□ -0.66
NPHP4-204ENST00000460696 RCVRNP35243 200 aa10.91□□□□□ -0.66
NPHP4-204ENST00000460696 ADAM15Q13444 863 aa10.91□□□□□ -0.66
NPHP4-204ENST00000460696 PRSS36Q5K4E3 855 aa10.91□□□□□ -0.66
NPHP4-204ENST00000460696 PGBD2Q6P3X8 592 aa10.91□□□□□ -0.66
NPHP4-204ENST00000460696 CEACAM19Q7Z692 300 aa10.91□□□□□ -0.66
NPHP4-204ENST00000460696 FAM160A2Q8N612 972 aaPredicted RBP10.91□□□□□ -0.66
NPHP4-204ENST00000460696 ZNF248Q8NDW4 579 aa10.91□□□□□ -0.66
NPHP4-204ENST00000460696 OR4K13Q8NH42 304 aa10.91□□□□□ -0.66
NPHP4-204ENST00000460696 ACOT11Q8WXI4 607 aaPredicted RBP10.91□□□□□ -0.66
NPHP4-204ENST00000460696 BEX1Q9HBH7 125 aa10.91□□□□□ -0.66
NPHP4-204ENST00000460696 BRD7Q9NPI1 651 aa10.91□□□□□ -0.66
NPHP4-204ENST00000460696 ZNF646O15015 1829 aaPredicted RBP10.91□□□□□ -0.66
NPHP4-204ENST00000460696 A0A1B0GVC2 190 aa10.91□□□□□ -0.66
NPHP4-204ENST00000460696 TRAPPC13A5PLN9 417 aa10.91□□□□□ -0.66
NPHP4-204ENST00000460696 A6NIN4 97 aa10.91□□□□□ -0.66
NPHP4-204ENST00000460696 PRKYO43930 277 aa10.91□□□□□ -0.66
NPHP4-204ENST00000460696 SOX30O94993 753 aa10.91□□□□□ -0.66
NPHP4-204ENST00000460696 GYPBP06028 91 aa10.91□□□□□ -0.66
NPHP4-204ENST00000460696 FCER2P06734 321 aa10.91□□□□□ -0.66
NPHP4-204ENST00000460696 TFPIP10646 304 aa10.91□□□□□ -0.66
NPHP4-204ENST00000460696 HK1P19367 917 aa10.91□□□□□ -0.66
NPHP4-204ENST00000460696 BSGP35613 385 aa10.91□□□□□ -0.66
NPHP4-204ENST00000460696 MLLT3P42568 568 aaPredicted RBP10.91□□□□□ -0.66
NPHP4-204ENST00000460696 TRA2BP62995 288 aaKnown RBP10.91□□□□□ -0.66
NPHP4-204ENST00000460696 HHEXQ03014 270 aa10.91□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms