RNA–Protein interactions for RNA: ENST00000427110.6

PTPRC-208, Transcript of protein tyrosine phosphatase, receptor type C, humanhuman

TSL 1 (best)

Gene PTPRC, Length 264 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRC-208ENST00000427110 GPD1LQ8N335 351 aa1.88□□□□□ -2.11
PTPRC-208ENST00000427110 CD177Q8N6Q3 437 aa1.88□□□□□ -2.11
PTPRC-208ENST00000427110 MINDY2Q8NBR6 621 aa1.88□□□□□ -2.11
PTPRC-208ENST00000427110 OR52B4Q8NGK2 314 aa1.88□□□□□ -2.11
PTPRC-208ENST00000427110 UBE2Q2Q8WVN8 375 aa1.88□□□□□ -2.11
PTPRC-208ENST00000427110 PPP1R16AQ96I34 528 aa1.88□□□□□ -2.11
PTPRC-208ENST00000427110 C9orf85Q96MD7 179 aa1.88□□□□□ -2.11
PTPRC-208ENST00000427110 GSDMCQ9BYG8 508 aa1.88□□□□□ -2.11
PTPRC-208ENST00000427110 NFKBIZQ9BYH8 718 aa1.88□□□□□ -2.11
PTPRC-208ENST00000427110 TRPV5Q9NQA5 729 aa1.88□□□□□ -2.11
PTPRC-208ENST00000427110 RDH8Q9NYR8 311 aa1.88□□□□□ -2.11
PTPRC-208ENST00000427110 ISY1Q9ULR0 285 aaKnown RBP1.88□□□□□ -2.11
PTPRC-208ENST00000427110 BARX2Q9UMQ3 279 aaPredicted RBP1.88□□□□□ -2.11
PTPRC-208ENST00000427110 FOXJ3Q9UPW0 622 aa1.88□□□□□ -2.11
PTPRC-208ENST00000427110 AURKCQ9UQB9 309 aa1.88□□□□□ -2.11
PTPRC-208ENST00000427110 NAALAD2Q9Y3Q0 740 aa1.88□□□□□ -2.11
PTPRC-208ENST00000427110 MTF2Q9Y483 593 aaPredicted RBP1.88□□□□□ -2.11
PTPRC-208ENST00000427110 RNF115Q9Y4L5 304 aa1.88□□□□□ -2.11
PTPRC-208ENST00000427110 DAPK1P53355 1430 aa1.88□□□□□ -2.11
PTPRC-208ENST00000427110 TROQ12816 1431 aaPredicted RBP1.88□□□□□ -2.11
PTPRC-208ENST00000427110 ARHGEF5Q12774 1597 aa1.88□□□□□ -2.11
PTPRC-208ENST00000427110 MAST1Q9Y2H9 1570 aa1.88□□□□□ -2.11
PTPRC-208ENST00000427110 ATP8B3O60423 1300 aa1.88□□□□□ -2.11
PTPRC-208ENST00000427110 ABCC10Q5T3U5 1492 aa1.88□□□□□ -2.11
PTPRC-208ENST00000427110 RPRD2Q5VT52 1461 aaKnown RBP1.88□□□□□ -2.11
PTPRC-208ENST00000427110 SHANK2Q9UPX8 1470 aa1.88□□□□□ -2.11
PTPRC-208ENST00000427110 KIF14Q15058 1648 aa1.88□□□□□ -2.11
PTPRC-208ENST00000427110 PREX2Q70Z35 1606 aa1.88□□□□□ -2.11
PTPRC-208ENST00000427110 TRBV7-9A0A0J9YWB2 115 aa1.87□□□□□ -2.11
PTPRC-208ENST00000427110 BICDL2A1A5D9 508 aa1.87□□□□□ -2.11
PTPRC-208ENST00000427110 FBLL1A6NHQ2 334 aaKnown RBP1.87□□□□□ -2.11
PTPRC-208ENST00000427110 WASHC1A8K0Z3 465 aa1.87□□□□□ -2.11
PTPRC-208ENST00000427110 E9PMD0 336 aa1.87□□□□□ -2.11
PTPRC-208ENST00000427110 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP1.87□□□□□ -2.11
PTPRC-208ENST00000427110 SGK494L7N484 410 aa1.87□□□□□ -2.11
PTPRC-208ENST00000427110 PDLIM1O00151 329 aa1.87□□□□□ -2.11
PTPRC-208ENST00000427110 IMPA2O14732 288 aa1.87□□□□□ -2.11
PTPRC-208ENST00000427110 ABCC5O15440 1437 aa1.87□□□□□ -2.11
PTPRC-208ENST00000427110 GPAA1O43292 621 aa1.87□□□□□ -2.11
PTPRC-208ENST00000427110 BCL2L11O43521 198 aa1.87□□□□□ -2.11
PTPRC-208ENST00000427110 VPS26AO75436 327 aa1.87□□□□□ -2.11
PTPRC-208ENST00000427110 TRIM16O95361 564 aa1.87□□□□□ -2.11
PTPRC-208ENST00000427110 ANP32DO95626 131 aa1.87□□□□□ -2.11
PTPRC-208ENST00000427110 SLC35E2P0CK97 266 aa1.87□□□□□ -2.11
PTPRC-208ENST00000427110 LAMP1P11279 417 aa1.87□□□□□ -2.11
PTPRC-208ENST00000427110 TNNI3P19429 210 aa1.87□□□□□ -2.11
PTPRC-208ENST00000427110 FUT1P19526 365 aa1.87□□□□□ -2.11
PTPRC-208ENST00000427110 PTBP1P26599 531 aaKnown RBP eCLIP1.87□□□□□ -2.111e-6■■■■□ 23
PTPRC-208ENST00000427110 TRPC1P48995 793 aa1.87□□□□□ -2.11
PTPRC-208ENST00000427110 SLC25A1P53007 311 aa1.87□□□□□ -2.11
PTPRC-208ENST00000427110 PRKCEQ02156 737 aa1.87□□□□□ -2.11
PTPRC-208ENST00000427110 PLOD1Q02809 727 aaPredicted RBP1.87□□□□□ -2.11
PTPRC-208ENST00000427110 PAX2Q02962 417 aa1.87□□□□□ -2.11
PTPRC-208ENST00000427110 FUT7Q11130 342 aa1.87□□□□□ -2.11
PTPRC-208ENST00000427110 IL18R1Q13478 541 aa1.87□□□□□ -2.11
PTPRC-208ENST00000427110 TFDP1Q14186 410 aa1.87□□□□□ -2.11
PTPRC-208ENST00000427110 TGIF1Q15583 401 aa1.87□□□□□ -2.11
PTPRC-208ENST00000427110 Q1RN00 199 aa1.87□□□□□ -2.11
PTPRC-208ENST00000427110 GSG1Q2KHT4 349 aa1.87□□□□□ -2.11
PTPRC-208ENST00000427110 LGSNQ5TDP6 509 aa1.87□□□□□ -2.11
PTPRC-208ENST00000427110 KRTAP5-4Q6L8H1 288 aa1.87□□□□□ -2.11
PTPRC-208ENST00000427110 ARSKQ6UWY0 536 aa1.87□□□□□ -2.11
PTPRC-208ENST00000427110 BTNL3Q6UXE8 466 aa1.87□□□□□ -2.11
PTPRC-208ENST00000427110 VITQ6UXI7 678 aa1.87□□□□□ -2.11
PTPRC-208ENST00000427110 C2orf66Q6UXQ4 117 aa1.87□□□□□ -2.11
PTPRC-208ENST00000427110 UNC5DQ6UXZ4 953 aa1.87□□□□□ -2.11
PTPRC-208ENST00000427110 GCNT7Q6ZNI0 430 aa1.87□□□□□ -2.11
PTPRC-208ENST00000427110 MARCH9Q86YJ5 346 aa1.87□□□□□ -2.11
PTPRC-208ENST00000427110 EFCAB13Q8IY85 973 aa1.87□□□□□ -2.11
PTPRC-208ENST00000427110 CCDC36Q8IYA8 594 aa1.87□□□□□ -2.11
PTPRC-208ENST00000427110 ZBED8Q8IZ13 594 aa1.87□□□□□ -2.11
PTPRC-208ENST00000427110 BCORP1Q8N888 145 aa1.87□□□□□ -2.11
PTPRC-208ENST00000427110 FNDC8Q8TC99 324 aa1.87□□□□□ -2.11
PTPRC-208ENST00000427110 ART4Q93070 314 aa1.87□□□□□ -2.11
PTPRC-208ENST00000427110 SLC25A36Q96CQ1 311 aa1.87□□□□□ -2.11
PTPRC-208ENST00000427110 TBC1D31Q96DN5 1066 aa1.87□□□□□ -2.11
PTPRC-208ENST00000427110 C11orf24Q96F05 449 aaPredicted RBP1.87□□□□□ -2.11
PTPRC-208ENST00000427110 SDSLQ96GA7 329 aa1.87□□□□□ -2.11
PTPRC-208ENST00000427110 HPDLQ96IR7 371 aa1.87□□□□□ -2.11
PTPRC-208ENST00000427110 SERAC1Q96JX3 654 aa1.87□□□□□ -2.11
PTPRC-208ENST00000427110 VPS35Q96QK1 796 aa1.87□□□□□ -2.11
PTPRC-208ENST00000427110 OR5M11Q96RB7 305 aa1.87□□□□□ -2.11
PTPRC-208ENST00000427110 RANBP9Q96S59 729 aa1.87□□□□□ -2.11
PTPRC-208ENST00000427110 CCT8L2Q96SF2 557 aa1.87□□□□□ -2.11
PTPRC-208ENST00000427110 TBCDQ9BTW9 1192 aa1.87□□□□□ -2.11
PTPRC-208ENST00000427110 TBC1D10AQ9BXI6 508 aa1.87□□□□□ -2.11
PTPRC-208ENST00000427110 ELOVL4Q9GZR5 314 aa1.87□□□□□ -2.11
PTPRC-208ENST00000427110 POLD4Q9HCU8 107 aa1.87□□□□□ -2.11
PTPRC-208ENST00000427110 MYO5CQ9NQX4 1742 aa1.87□□□□□ -2.11
PTPRC-208ENST00000427110 SLC7A10Q9NS82 523 aa1.87□□□□□ -2.11
PTPRC-208ENST00000427110 HPF1Q9NWY4 346 aa1.87□□□□□ -2.11
PTPRC-208ENST00000427110 FAM120CQ9NX05 1096 aaKnown RBP1.87□□□□□ -2.11
PTPRC-208ENST00000427110 ELOVL2Q9NXB9 296 aa1.87□□□□□ -2.11
PTPRC-208ENST00000427110 ANKMY1Q9P2S6 941 aa1.87□□□□□ -2.11
PTPRC-208ENST00000427110 MBD2Q9UBB5 411 aa1.87□□□□□ -2.11
PTPRC-208ENST00000427110 ZNF107Q9UII5 783 aaPredicted RBP1.87□□□□□ -2.11
PTPRC-208ENST00000427110 CHMP2BQ9UQN3 213 aa1.87□□□□□ -2.11
PTPRC-208ENST00000427110 VSIG4Q9Y279 399 aa1.87□□□□□ -2.11
PTPRC-208ENST00000427110 EXOSC1Q9Y3B2 195 aaKnown RBP1.87□□□□□ -2.11
PTPRC-208ENST00000427110 ERCC6Q03468 1493 aa1.87□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms