RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 GRAMD1BQ3KR37 738 aa11.41□□□□□ -0.58
SKA1-203ENST00000417656 DCST2Q5T1A1 773 aa11.41□□□□□ -0.58
SKA1-203ENST00000417656 FNDC7Q5VTL7 733 aa11.41□□□□□ -0.58
SKA1-203ENST00000417656 SLC30A6Q6NXT4 461 aa11.41□□□□□ -0.58
SKA1-203ENST00000417656 ZNF621Q6ZSS3 439 aa11.41□□□□□ -0.58
SKA1-203ENST00000417656 PACS2Q86VP3 889 aa11.41□□□□□ -0.58
SKA1-203ENST00000417656 RNF130Q86XS8 419 aa11.41□□□□□ -0.58
SKA1-203ENST00000417656 FAM109AQ8N4B1 249 aa11.41□□□□□ -0.58
SKA1-203ENST00000417656 TRIML2Q8N7C3 387 aa11.41□□□□□ -0.58
SKA1-203ENST00000417656 FAM110BQ8TC76 370 aa11.41□□□□□ -0.58
SKA1-203ENST00000417656 NTNG2Q96CW9 530 aa11.41□□□□□ -0.58
SKA1-203ENST00000417656 AURKBQ96GD4 344 aaPredicted RBP11.41□□□□□ -0.58
SKA1-203ENST00000417656 FAM107BQ9H098 131 aa11.41□□□□□ -0.58
SKA1-203ENST00000417656 DEFB127Q9H1M4 99 aa11.41□□□□□ -0.58
SKA1-203ENST00000417656 RABEP2Q9H5N1 569 aa11.41□□□□□ -0.58
SKA1-203ENST00000417656 GIN1Q9NXP7 522 aa11.41□□□□□ -0.58
SKA1-203ENST00000417656 B4GALT7Q9UBV7 327 aa11.41□□□□□ -0.58
SKA1-203ENST00000417656 ABCG2Q9UNQ0 655 aa11.41□□□□□ -0.58
SKA1-203ENST00000417656 C15orf41Q9Y2V0 281 aa11.41□□□□□ -0.58
SKA1-203ENST00000417656 WIF1Q9Y5W5 379 aa11.41□□□□□ -0.58
SKA1-203ENST00000417656 NINQ8N4C6 2090 aa11.4□□□□□ -0.58
SKA1-203ENST00000417656 NPIPA5A0A0B4J1W7 369 aa11.4□□□□□ -0.58
SKA1-203ENST00000417656 NPIPA7E9PJI5 369 aa11.4□□□□□ -0.58
SKA1-203ENST00000417656 ADAM10O14672 748 aa11.4□□□□□ -0.58
SKA1-203ENST00000417656 ZNHIT1O43257 154 aa11.4□□□□□ -0.58
SKA1-203ENST00000417656 ASNA1O43681 348 aa11.4□□□□□ -0.58
SKA1-203ENST00000417656 FADS1O60427 444 aa11.4□□□□□ -0.58
SKA1-203ENST00000417656 NPIPA8P0DM63 369 aa11.4□□□□□ -0.58
SKA1-203ENST00000417656 GDF1P27539 372 aa11.4□□□□□ -0.58
SKA1-203ENST00000417656 PTPN6P29350 595 aa11.4□□□□□ -0.58
SKA1-203ENST00000417656 GAS1P54826 345 aa11.4□□□□□ -0.58
SKA1-203ENST00000417656 FUT5Q11128 374 aa11.4□□□□□ -0.58
SKA1-203ENST00000417656 SNTA1Q13424 505 aa11.4□□□□□ -0.58
SKA1-203ENST00000417656 UBAP2LQ14157 1087 aaKnown RBP11.4□□□□□ -0.58
SKA1-203ENST00000417656 HYAL4Q2M3T9 481 aa11.4□□□□□ -0.58
SKA1-203ENST00000417656 METTL21CQ5VZV1 264 aa11.4□□□□□ -0.58
SKA1-203ENST00000417656 OLIG3Q7RTU3 272 aa11.4□□□□□ -0.58
SKA1-203ENST00000417656 SPPL2CQ8IUH8 684 aa11.4□□□□□ -0.58
SKA1-203ENST00000417656 GHDCQ8N2G8 530 aa11.4□□□□□ -0.58
SKA1-203ENST00000417656 MIPOL1Q8TD10 442 aa11.4□□□□□ -0.58
SKA1-203ENST00000417656 GTF2H4Q92759 462 aa11.4□□□□□ -0.58
SKA1-203ENST00000417656 RAB8BQ92930 207 aa11.4□□□□□ -0.58
SKA1-203ENST00000417656 RTN4RQ9BZR6 473 aa11.4□□□□□ -0.58
SKA1-203ENST00000417656 PAIP1Q9H074 479 aaKnown RBP11.4□□□□□ -0.58
SKA1-203ENST00000417656 ZDHHC11Q9H8X9 412 aa11.4□□□□□ -0.58
SKA1-203ENST00000417656 SLC52A3Q9NQ40 469 aa11.4□□□□□ -0.58
SKA1-203ENST00000417656 TMEM45AQ9NWC5 275 aa11.4□□□□□ -0.58
SKA1-203ENST00000417656 A0A096LPI6 279 aa11.39□□□□□ -0.59
SKA1-203ENST00000417656 PDE9AO76083 593 aa11.39□□□□□ -0.59
SKA1-203ENST00000417656 UBR5O95071 2799 aaPredicted RBP11.39□□□□□ -0.59
SKA1-203ENST00000417656 OXSR1O95747 527 aaPredicted RBP11.39□□□□□ -0.59
SKA1-203ENST00000417656 ZCCHC18P0CG32 403 aa11.39□□□□□ -0.59
SKA1-203ENST00000417656 OR12D1P0DN82 309 aa11.39□□□□□ -0.59
SKA1-203ENST00000417656 HOXB9P17482 250 aaPredicted RBP11.39□□□□□ -0.59
SKA1-203ENST00000417656 ATP6V1C1P21283 382 aa11.39□□□□□ -0.59
SKA1-203ENST00000417656 ELAVL4P26378 380 aaKnown RBP11.39□□□□□ -0.59
SKA1-203ENST00000417656 TRPC1P48995 793 aa11.39□□□□□ -0.59
SKA1-203ENST00000417656 EIF2S3LQ2VIR3 472 aaKnown RBP11.39□□□□□ -0.59
SKA1-203ENST00000417656 PAGE3Q5JUK9 113 aa11.39□□□□□ -0.59
SKA1-203ENST00000417656 COX20Q5RI15 118 aa11.39□□□□□ -0.59
SKA1-203ENST00000417656 TIGD3Q6B0B8 471 aa11.39□□□□□ -0.59
SKA1-203ENST00000417656 BNC2Q6ZN30 1099 aaPredicted RBP11.39□□□□□ -0.59
SKA1-203ENST00000417656 C16orf62Q7Z3J2 963 aa11.39□□□□□ -0.59
SKA1-203ENST00000417656 SPATA21Q7Z572 469 aa11.39□□□□□ -0.59
SKA1-203ENST00000417656 FGD2Q7Z6J4 655 aa11.39□□□□□ -0.59
SKA1-203ENST00000417656 MARCH3Q86UD3 253 aa11.39□□□□□ -0.59
SKA1-203ENST00000417656 WDSUB1Q8N9V3 476 aa11.39□□□□□ -0.59
SKA1-203ENST00000417656 GATSQ8NAP1 163 aa11.39□□□□□ -0.59
SKA1-203ENST00000417656 OR1J4Q8NGS1 313 aa11.39□□□□□ -0.59
SKA1-203ENST00000417656 ZFP90Q8TF47 636 aa11.39□□□□□ -0.59
SKA1-203ENST00000417656 GNRHR2Q96P88 292 aa11.39□□□□□ -0.59
SKA1-203ENST00000417656 G6PC3Q9BUM1 346 aa11.39□□□□□ -0.59
SKA1-203ENST00000417656 TBL1XR1Q9BZK7 514 aa11.39□□□□□ -0.59
SKA1-203ENST00000417656 NSRP1Q9H0G5 558 aaKnown RBP11.39□□□□□ -0.59
SKA1-203ENST00000417656 SLC6A15Q9H2J7 730 aa11.39□□□□□ -0.59
SKA1-203ENST00000417656 UBQLN3Q9H347 655 aa11.39□□□□□ -0.59
SKA1-203ENST00000417656 SAR1AQ9NR31 198 aa11.39□□□□□ -0.59
SKA1-203ENST00000417656 PPP4R1LQ9P1A2 415 aa11.39□□□□□ -0.59
SKA1-203ENST00000417656 OSGIN2Q9Y236 505 aa11.39□□□□□ -0.59
SKA1-203ENST00000417656 ZGRF1Q86YA3 2104 aa11.38□□□□□ -0.59
SKA1-203ENST00000417656 A0A1B0GTH9 108 aa11.38□□□□□ -0.59
SKA1-203ENST00000417656 A0A1W2PP18 115 aa11.38□□□□□ -0.59
SKA1-203ENST00000417656 DUXAA6NLW8 204 aa11.38□□□□□ -0.59
SKA1-203ENST00000417656 B4DXG7 233 aa11.38□□□□□ -0.59
SKA1-203ENST00000417656 HMGN4O00479 90 aa11.38□□□□□ -0.59
SKA1-203ENST00000417656 ZIC2O95409 532 aaPredicted RBP11.38□□□□□ -0.59
SKA1-203ENST00000417656 KRT75O95678 551 aa11.38□□□□□ -0.59
SKA1-203ENST00000417656 AK1P00568 194 aa11.38□□□□□ -0.59
SKA1-203ENST00000417656 DRD4P21917 467 aa11.38□□□□□ -0.59
SKA1-203ENST00000417656 DCTP40126 519 aa11.38□□□□□ -0.59
SKA1-203ENST00000417656 RNF144AP50876 292 aaPredicted RBP11.38□□□□□ -0.59
SKA1-203ENST00000417656 MVDP53602 400 aa11.38□□□□□ -0.59
SKA1-203ENST00000417656 KRTCAP3Q53RY4 240 aa11.38□□□□□ -0.59
SKA1-203ENST00000417656 DDX59Q5T1V6 619 aaKnown RBP eCLIP11.38□□□□□ -0.59
SKA1-203ENST00000417656 OR5M10Q6IEU7 315 aa11.38□□□□□ -0.59
SKA1-203ENST00000417656 HEPHL1Q6MZM0 1159 aa11.38□□□□□ -0.59
SKA1-203ENST00000417656 APOOLQ6UXV4 268 aa11.38□□□□□ -0.59
SKA1-203ENST00000417656 TRILQ7L0X0 811 aa11.38□□□□□ -0.59
SKA1-203ENST00000417656 CHERPQ8IWX8 916 aaKnown RBP11.38□□□□□ -0.59
SKA1-203ENST00000417656 MSRB3Q8IXL7 192 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms