RNA–Protein interactions for RNA: ENST00000410093.5

LIMS1-205, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,526 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-205ENST00000410093 COX18Q8N8Q8 333 aa12.66□□□□□ -0.38
LIMS1-205ENST00000410093 PROKR2Q8NFJ6 384 aa12.66□□□□□ -0.38
LIMS1-205ENST00000410093 OR6C4Q8NGE1 309 aa12.66□□□□□ -0.38
LIMS1-205ENST00000410093 FNDC8Q8TC99 324 aa12.66□□□□□ -0.38
LIMS1-205ENST00000410093 RFKQ969G6 155 aa12.66□□□□□ -0.38
LIMS1-205ENST00000410093 ZNF285Q96NJ3 590 aa12.66□□□□□ -0.38
LIMS1-205ENST00000410093 MCHR1Q99705 422 aa12.66□□□□□ -0.38
LIMS1-205ENST00000410093 MMP27Q9H306 513 aa12.66□□□□□ -0.38
LIMS1-205ENST00000410093 ENAMQ9NRM1 1142 aa12.66□□□□□ -0.38
LIMS1-205ENST00000410093 TBCCD1Q9NVR7 557 aa12.66□□□□□ -0.38
LIMS1-205ENST00000410093 SEC14L4Q9UDX3 406 aa12.66□□□□□ -0.38
LIMS1-205ENST00000410093 OSGIN1Q9UJX0 560 aa12.66□□□□□ -0.38
LIMS1-205ENST00000410093 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP12.66□□□□□ -0.38
LIMS1-205ENST00000410093 DOLKQ9UPQ8 538 aa12.66□□□□□ -0.38
LIMS1-205ENST00000410093 M0R082 166 aa12.65□□□□□ -0.38
LIMS1-205ENST00000410093 CCRL2O00421 344 aa12.65□□□□□ -0.38
LIMS1-205ENST00000410093 CLDN4O14493 209 aa12.65□□□□□ -0.38
LIMS1-205ENST00000410093 KIAA0513O60268 411 aa12.65□□□□□ -0.38
LIMS1-205ENST00000410093 NKX2-2O95096 273 aa12.65□□□□□ -0.38
LIMS1-205ENST00000410093 HMGN1P05114 100 aa12.65□□□□□ -0.38
LIMS1-205ENST00000410093 ACP2P11117 423 aa12.65□□□□□ -0.38
LIMS1-205ENST00000410093 RGS6P49758 472 aa12.65□□□□□ -0.38
LIMS1-205ENST00000410093 PSMD4P55036 377 aaKnown RBP12.65□□□□□ -0.38
LIMS1-205ENST00000410093 HNRNPKP61978 463 aaKnown RBP eCLIP12.65□□□□□ -0.38
LIMS1-205ENST00000410093 POU6F2P78424 691 aaPredicted RBP12.65□□□□□ -0.38
LIMS1-205ENST00000410093 GINS1Q14691 196 aa12.65□□□□□ -0.38
LIMS1-205ENST00000410093 ARMCX4Q5H9R4 360 aa12.65□□□□□ -0.38
LIMS1-205ENST00000410093 DCST2Q5T1A1 773 aa12.65□□□□□ -0.38
LIMS1-205ENST00000410093 TMEM236Q5W0B7 351 aa12.65□□□□□ -0.38
LIMS1-205ENST00000410093 TUBA3EQ6PEY2 450 aa12.65□□□□□ -0.38
LIMS1-205ENST00000410093 C16orf87Q6PH81 154 aa12.65□□□□□ -0.38
LIMS1-205ENST00000410093 SLC36A4Q6YBV0 504 aa12.65□□□□□ -0.38
LIMS1-205ENST00000410093 ZNF438Q7Z4V0 828 aa12.65□□□□□ -0.38
LIMS1-205ENST00000410093 COMTD1Q86VU5 262 aa12.65□□□□□ -0.38
LIMS1-205ENST00000410093 C17orf82Q86X59 251 aaPredicted RBP12.65□□□□□ -0.38
LIMS1-205ENST00000410093 ARHGEF39Q8N4T4 335 aa12.65□□□□□ -0.38
LIMS1-205ENST00000410093 OR9Q1Q8NGQ5 310 aa12.65□□□□□ -0.38
LIMS1-205ENST00000410093 PATE1Q8WXA2 126 aa12.65□□□□□ -0.38
LIMS1-205ENST00000410093 PLEKHA8Q96JA3 519 aa12.65□□□□□ -0.38
LIMS1-205ENST00000410093 SLC6A18Q96N87 628 aa12.65□□□□□ -0.38
LIMS1-205ENST00000410093 RHNO1Q9BSD3 238 aa12.65□□□□□ -0.38
LIMS1-205ENST00000410093 LMF2Q9BU23 707 aaKnown RBP12.65□□□□□ -0.38
LIMS1-205ENST00000410093 MAT2BQ9NZL9 334 aa12.65□□□□□ -0.38
LIMS1-205ENST00000410093 CCDC59Q9P031 241 aaKnown RBP12.65□□□□□ -0.38
LIMS1-205ENST00000410093 TESQ9UGI8 421 aaKnown RBP12.65□□□□□ -0.38
LIMS1-205ENST00000410093 TMEM5Q9Y2B1 443 aa12.65□□□□□ -0.38
LIMS1-205ENST00000410093 A0A1W2PR77 199 aa12.64□□□□□ -0.39
LIMS1-205ENST00000410093 A0A1W2PS29 197 aa12.64□□□□□ -0.39
LIMS1-205ENST00000410093 TRAPPC13A5PLN9 417 aa12.64□□□□□ -0.39
LIMS1-205ENST00000410093 B4DGG1 531 aa12.64□□□□□ -0.39
LIMS1-205ENST00000410093 FGF17O60258 216 aa12.64□□□□□ -0.39
LIMS1-205ENST00000410093 OR10H2O60403 315 aa12.64□□□□□ -0.39
LIMS1-205ENST00000410093 CTNSO60931 367 aa12.64□□□□□ -0.39
LIMS1-205ENST00000410093 ENTPD6O75354 484 aa12.64□□□□□ -0.39
LIMS1-205ENST00000410093 NSA2O95478 260 aaKnown RBP12.64□□□□□ -0.39
LIMS1-205ENST00000410093 NADKO95544 446 aaPredicted RBP12.64□□□□□ -0.39
LIMS1-205ENST00000410093 PROS1P07225 676 aa12.64□□□□□ -0.39
LIMS1-205ENST00000410093 DBTP11182 482 aaKnown RBP12.64□□□□□ -0.39
LIMS1-205ENST00000410093 PVRP15151 417 aa12.64□□□□□ -0.39
LIMS1-205ENST00000410093 TNNI3P19429 210 aa12.64□□□□□ -0.39
LIMS1-205ENST00000410093 LIPAP38571 399 aa12.64□□□□□ -0.39
LIMS1-205ENST00000410093 OMPP47874 163 aa12.64□□□□□ -0.39
LIMS1-205ENST00000410093 NUDT6P53370 316 aa12.64□□□□□ -0.39
LIMS1-205ENST00000410093 IGLV3-21P80748 117 aaPredicted RBP12.64□□□□□ -0.39
LIMS1-205ENST00000410093 SHC2P98077 582 aa12.64□□□□□ -0.39
LIMS1-205ENST00000410093 MGAT2Q10469 447 aa12.64□□□□□ -0.39
LIMS1-205ENST00000410093 RAB40BQ12829 278 aa12.64□□□□□ -0.39
LIMS1-205ENST00000410093 OGFOD3Q6PK18 319 aa12.64□□□□□ -0.39
LIMS1-205ENST00000410093 MED25Q71SY5 747 aa12.64□□□□□ -0.39
LIMS1-205ENST00000410093 GRAMD2AQ8IUY3 354 aa12.64□□□□□ -0.39
LIMS1-205ENST00000410093 VWA5B2Q8N398 1253 aa12.64□□□□□ -0.39
LIMS1-205ENST00000410093 ARL14Q8N4G2 192 aa12.64□□□□□ -0.39
LIMS1-205ENST00000410093 MINDY2Q8NBR6 621 aa12.64□□□□□ -0.39
LIMS1-205ENST00000410093 ZBTB44Q8NCP5 570 aa12.64□□□□□ -0.39
LIMS1-205ENST00000410093 TMEM163Q8TC26 289 aa12.64□□□□□ -0.39
LIMS1-205ENST00000410093 SLC41A3Q96GZ6 507 aa12.64□□□□□ -0.39
LIMS1-205ENST00000410093 SH3YL1Q96HL8 342 aaPredicted RBP12.64□□□□□ -0.39
LIMS1-205ENST00000410093 HS6ST2Q96MM7 605 aa12.64□□□□□ -0.39
LIMS1-205ENST00000410093 SLC38A3Q99624 504 aa12.64□□□□□ -0.39
LIMS1-205ENST00000410093 MGLLQ99685 303 aa12.64□□□□□ -0.39
LIMS1-205ENST00000410093 WFDC6Q9BQY6 131 aa12.64□□□□□ -0.39
LIMS1-205ENST00000410093 ISYNA1Q9NPH2 558 aa12.64□□□□□ -0.39
LIMS1-205ENST00000410093 IL20Q9NYY1 176 aa12.64□□□□□ -0.39
LIMS1-205ENST00000410093 NCDNQ9UBB6 729 aa12.64□□□□□ -0.39
LIMS1-205ENST00000410093 DIMT1Q9UNQ2 313 aaKnown RBP12.64□□□□□ -0.39
LIMS1-205ENST00000410093 PLCL2Q9UPR0 1127 aa12.64□□□□□ -0.39
LIMS1-205ENST00000410093 MYO15AQ9UKN7 3530 aa12.64□□□□□ -0.39
LIMS1-205ENST00000410093 ZFHX2Q9C0A1 2572 aaPredicted RBP12.63□□□□□ -0.39
LIMS1-205ENST00000410093 SYNDIG1LA6NDD5 238 aa12.63□□□□□ -0.39
LIMS1-205ENST00000410093 FAM227AF5H4B4 570 aa12.63□□□□□ -0.39
LIMS1-205ENST00000410093 H0YIG0 161 aa12.63□□□□□ -0.39
LIMS1-205ENST00000410093 PRODHO43272 600 aa12.63□□□□□ -0.39
LIMS1-205ENST00000410093 BRINP1O60477 761 aa12.63□□□□□ -0.39
LIMS1-205ENST00000410093 FCMRO60667 390 aa12.63□□□□□ -0.39
LIMS1-205ENST00000410093 SOX14O95416 240 aa12.63□□□□□ -0.39
LIMS1-205ENST00000410093 RAB36O95755 333 aa12.63□□□□□ -0.39
LIMS1-205ENST00000410093 SCG5P05408 212 aa12.63□□□□□ -0.39
LIMS1-205ENST00000410093 ST6GAL1P15907 406 aa12.63□□□□□ -0.39
LIMS1-205ENST00000410093 ENDOUP21128 410 aaKnown RBP12.63□□□□□ -0.39
LIMS1-205ENST00000410093 AVPR1BP47901 424 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms