RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 ZNF554Q86TJ5 538 aa20.1■□□□□ 0.81
TRIM54-202ENST00000380075 PIGXQ8TBF5 258 aa20.1■□□□□ 0.81
TRIM54-202ENST00000380075 CDS1Q92903 461 aa20.1■□□□□ 0.81
TRIM54-202ENST00000380075 ORAI3Q9BRQ5 295 aa20.1■□□□□ 0.81
TRIM54-202ENST00000380075 MROQ9BYG7 248 aa20.1■□□□□ 0.81
TRIM54-202ENST00000380075 POLR2J2Q9GZM3 115 aaKnown RBP20.1■□□□□ 0.81
TRIM54-202ENST00000380075 PIGUQ9H490 435 aa20.1■□□□□ 0.81
TRIM54-202ENST00000380075 CHST2Q9Y4C5 530 aa20.1■□□□□ 0.81
TRIM54-202ENST00000380075 LRP4O75096 1905 aa20.09■□□□□ 0.81
TRIM54-202ENST00000380075 LOC105369274A0A096LPK9 316 aa20.09■□□□□ 0.81
TRIM54-202ENST00000380075 LOC102723532A0A0G2JNH3 316 aa20.09■□□□□ 0.81
TRIM54-202ENST00000380075 LOC100506127A0A0U1RQW1 187 aa20.09■□□□□ 0.81
TRIM54-202ENST00000380075 TLX2O43763 284 aaPredicted RBP20.09■□□□□ 0.81
TRIM54-202ENST00000380075 PRKYO43930 277 aa20.09■□□□□ 0.81
TRIM54-202ENST00000380075 ADRA2AP08913 450 aa20.09■□□□□ 0.81
TRIM54-202ENST00000380075 GRK5P34947 590 aa20.09■□□□□ 0.81
TRIM54-202ENST00000380075 PPP5CP53041 499 aa20.09■□□□□ 0.81
TRIM54-202ENST00000380075 ATP1A4Q13733 1029 aa20.09■□□□□ 0.81
TRIM54-202ENST00000380075 C1DQ13901 141 aaKnown RBP20.09■□□□□ 0.81
TRIM54-202ENST00000380075 LYSMD4Q5XG99 296 aa20.09■□□□□ 0.81
TRIM54-202ENST00000380075 ATCAYQ86WG3 371 aa20.09■□□□□ 0.81
TRIM54-202ENST00000380075 OR4N4Q8N0Y3 316 aa20.09■□□□□ 0.81
TRIM54-202ENST00000380075 SLC22A18ASQ8N1D0 253 aa20.09■□□□□ 0.81
TRIM54-202ENST00000380075 ACOT11Q8WXI4 607 aaPredicted RBP20.09■□□□□ 0.81
TRIM54-202ENST00000380075 SLC9A6Q92581 669 aa20.09■□□□□ 0.81
TRIM54-202ENST00000380075 ZG16BQ96DA0 208 aa20.09■□□□□ 0.81
TRIM54-202ENST00000380075 SLC6A18Q96N87 628 aa20.09■□□□□ 0.81
TRIM54-202ENST00000380075 GPA33Q99795 319 aa20.09■□□□□ 0.81
TRIM54-202ENST00000380075 SEMA4GQ9NTN9 838 aa20.09■□□□□ 0.81
TRIM54-202ENST00000380075 MRPS18AQ9NVS2 196 aaKnown RBP20.09■□□□□ 0.81
TRIM54-202ENST00000380075 DIMT1Q9UNQ2 313 aaKnown RBP20.09■□□□□ 0.81
TRIM54-202ENST00000380075 SATB2Q9UPW6 733 aa20.09■□□□□ 0.81
TRIM54-202ENST00000380075 CFL2Q9Y281 166 aa20.09■□□□□ 0.81
TRIM54-202ENST00000380075 A0A1W2PPC4 97 aa20.08■□□□□ 0.81
TRIM54-202ENST00000380075 ARHGAP33O14559 1287 aa20.08■□□□□ 0.81
TRIM54-202ENST00000380075 ZIC2O95409 532 aaPredicted RBP20.08■□□□□ 0.81
TRIM54-202ENST00000380075 DUSP8Q13202 625 aa20.08■□□□□ 0.81
TRIM54-202ENST00000380075 SPHARQ15513 63 aa20.08■□□□□ 0.81
TRIM54-202ENST00000380075 KLHL22Q53GT1 634 aa20.08■□□□□ 0.81
TRIM54-202ENST00000380075 SYT14P1Q58G82 188 aa20.08■□□□□ 0.81
TRIM54-202ENST00000380075 EXOSC6Q5RKV6 272 aaKnown RBP20.08■□□□□ 0.81
TRIM54-202ENST00000380075 FHL5Q5TD97 284 aa20.08■□□□□ 0.81
TRIM54-202ENST00000380075 TYW3Q6IPR3 259 aaKnown RBP20.08■□□□□ 0.81
TRIM54-202ENST00000380075 NIPAL1Q6NVV3 410 aa20.08■□□□□ 0.81
TRIM54-202ENST00000380075 PLEKHM3Q6ZWE6 761 aa20.08■□□□□ 0.81
TRIM54-202ENST00000380075 SLC34A3Q8N130 599 aa20.08■□□□□ 0.81
TRIM54-202ENST00000380075 IQCF1Q8N6M8 205 aa20.08■□□□□ 0.81
TRIM54-202ENST00000380075 PMM1Q92871 262 aa20.08■□□□□ 0.81
TRIM54-202ENST00000380075 FGF11Q92914 225 aa20.08■□□□□ 0.81
TRIM54-202ENST00000380075 OPALINQ96PE5 141 aa20.08■□□□□ 0.81
TRIM54-202ENST00000380075 SLC38A2Q96QD8 506 aa20.08■□□□□ 0.81
TRIM54-202ENST00000380075 CHCHD6Q9BRQ6 235 aa20.08■□□□□ 0.81
TRIM54-202ENST00000380075 MIR1-1HGQ9H1L0 117 aa20.08■□□□□ 0.81
TRIM54-202ENST00000380075 CTPS2Q9NRF8 586 aa20.08■□□□□ 0.81
TRIM54-202ENST00000380075 HRASLS2Q9NWW9 162 aa20.08■□□□□ 0.81
TRIM54-202ENST00000380075 GPR55Q9Y2T6 319 aaPredicted RBP20.08■□□□□ 0.81
TRIM54-202ENST00000380075 NINQ8N4C6 2090 aa20.08■□□□□ 0.8
TRIM54-202ENST00000380075 CPSF4LA6NMK7 179 aaKnown RBP20.08■□□□□ 0.8
TRIM54-202ENST00000380075 PLOD3O60568 738 aa20.08■□□□□ 0.8
TRIM54-202ENST00000380075 FCMRO60667 390 aa20.08■□□□□ 0.8
TRIM54-202ENST00000380075 AK1P00568 194 aa20.08■□□□□ 0.8
TRIM54-202ENST00000380075 FPR3P25089 353 aa20.08■□□□□ 0.8
TRIM54-202ENST00000380075 SOX6P35712 828 aa20.08■□□□□ 0.8
TRIM54-202ENST00000380075 STAT5AP42229 794 aa20.08■□□□□ 0.8
TRIM54-202ENST00000380075 SNRPNP63162 240 aaKnown RBP20.08■□□□□ 0.8
TRIM54-202ENST00000380075 TMEM44Q2T9K0 475 aa20.08■□□□□ 0.8
TRIM54-202ENST00000380075 TRIM16LQ309B1 348 aa20.08■□□□□ 0.8
TRIM54-202ENST00000380075 ACSM5Q6NUN0 579 aa20.08■□□□□ 0.8
TRIM54-202ENST00000380075 BTLAQ7Z6A9 289 aa20.08■□□□□ 0.8
TRIM54-202ENST00000380075 NANOGP1Q8N7R0 232 aa20.08■□□□□ 0.8
TRIM54-202ENST00000380075 TMEM163Q8TC26 289 aa20.08■□□□□ 0.8
TRIM54-202ENST00000380075 DNASE2BQ8WZ79 361 aa20.08■□□□□ 0.8
TRIM54-202ENST00000380075 LRR1Q96L50 414 aa20.08■□□□□ 0.8
TRIM54-202ENST00000380075 STACQ99469 402 aa20.08■□□□□ 0.8
TRIM54-202ENST00000380075 MCHR1Q99705 422 aa20.08■□□□□ 0.8
TRIM54-202ENST00000380075 TEX12Q9BXU0 123 aa20.08■□□□□ 0.8
TRIM54-202ENST00000380075 IL21RQ9HBE5 538 aa20.08■□□□□ 0.8
TRIM54-202ENST00000380075 KRCC1Q9NPI7 259 aaPredicted RBP20.08■□□□□ 0.8
TRIM54-202ENST00000380075 DUSP22Q9NRW4 184 aa20.08■□□□□ 0.8
TRIM54-202ENST00000380075 GPR27Q9NS67 375 aa20.08■□□□□ 0.8
TRIM54-202ENST00000380075 TMEM74BQ9NUR3 256 aa20.08■□□□□ 0.8
TRIM54-202ENST00000380075 GON4LQ3T8J9 2241 aa20.08■□□□□ 0.8
TRIM54-202ENST00000380075 WDR87Q6ZQQ6 2873 aa20.07■□□□□ 0.8
TRIM54-202ENST00000380075 SPTY2D1-AS1A0A0U1RR47 76 aa20.07■□□□□ 0.8
TRIM54-202ENST00000380075 RAB36O95755 333 aa20.07■□□□□ 0.8
TRIM54-202ENST00000380075 ACP2P11117 423 aa20.07■□□□□ 0.8
TRIM54-202ENST00000380075 CD27P26842 260 aa20.07■□□□□ 0.8
TRIM54-202ENST00000380075 RANBP1P43487 201 aa20.07■□□□□ 0.8
TRIM54-202ENST00000380075 OMPP47874 163 aa20.07■□□□□ 0.8
TRIM54-202ENST00000380075 AVPR1BP47901 424 aa20.07■□□□□ 0.8
TRIM54-202ENST00000380075 OXA1LQ15070 435 aa20.07■□□□□ 0.8
TRIM54-202ENST00000380075 SNAPC1Q16533 368 aa20.07■□□□□ 0.8
TRIM54-202ENST00000380075 DUSP5Q16690 384 aa20.07■□□□□ 0.8
TRIM54-202ENST00000380075 WDR45BQ5MNZ6 344 aa20.07■□□□□ 0.8
TRIM54-202ENST00000380075 PRICKLE2Q7Z3G6 844 aa20.07■□□□□ 0.8
TRIM54-202ENST00000380075 OOSP2Q86WS3 158 aa20.07■□□□□ 0.8
TRIM54-202ENST00000380075 KIF18BQ86Y91 864 aa20.07■□□□□ 0.8
TRIM54-202ENST00000380075 CLIP4Q8N3C7 705 aa20.07■□□□□ 0.8
TRIM54-202ENST00000380075 CDRT4Q8N9R6 151 aa20.07■□□□□ 0.8
TRIM54-202ENST00000380075 SUMF1Q8NBK3 374 aa20.07■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 59.3 ms