RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 ETV6P41212 452 aa12.48□□□□□ -0.41
CCDC3-202ENST00000378839 SMSP52788 366 aa12.48□□□□□ -0.41
CCDC3-202ENST00000378839 GNA13Q14344 377 aa12.48□□□□□ -0.41
CCDC3-202ENST00000378839 TRAM2Q15035 370 aa12.48□□□□□ -0.41
CCDC3-202ENST00000378839 NRMQ8IXM6 262 aa12.48□□□□□ -0.41
CCDC3-202ENST00000378839 ZNF485Q8NCK3 441 aa12.48□□□□□ -0.41
CCDC3-202ENST00000378839 RPLP0P6Q8NHW5 317 aa12.48□□□□□ -0.41
CCDC3-202ENST00000378839 GNPDA2Q8TDQ7 276 aa12.48□□□□□ -0.41
CCDC3-202ENST00000378839 RNFT2Q96EX2 444 aa12.48□□□□□ -0.41
CCDC3-202ENST00000378839 ZNF649Q9BS31 505 aa12.48□□□□□ -0.41
CCDC3-202ENST00000378839 RERGLQ9H628 205 aa12.48□□□□□ -0.41
CCDC3-202ENST00000378839 SLC22A7Q9Y694 548 aa12.48□□□□□ -0.41
CCDC3-202ENST00000378839 SMIM30A4D0T7 59 aa12.47□□□□□ -0.41
CCDC3-202ENST00000378839 H0YGG7 62 aa12.47□□□□□ -0.41
CCDC3-202ENST00000378839 RAB36O95755 333 aa12.47□□□□□ -0.41
CCDC3-202ENST00000378839 EIF2S1P05198 315 aaKnown RBP12.47□□□□□ -0.41
CCDC3-202ENST00000378839 GKN3PP0CG01 181 aa12.47□□□□□ -0.41
CCDC3-202ENST00000378839 HOXD11P31277 338 aaPredicted RBP12.47□□□□□ -0.41
CCDC3-202ENST00000378839 TNFSF8P32971 234 aa12.47□□□□□ -0.41
CCDC3-202ENST00000378839 NR4A2P43354 598 aa12.47□□□□□ -0.41
CCDC3-202ENST00000378839 FXYD6P3P58550 94 aa12.47□□□□□ -0.41
CCDC3-202ENST00000378839 ARF3P61204 181 aaPredicted RBP12.47□□□□□ -0.41
CCDC3-202ENST00000378839 EEF1A1P68104 462 aaKnown RBP12.47□□□□□ -0.41
CCDC3-202ENST00000378839 RGS1Q08116 209 aa12.47□□□□□ -0.41
CCDC3-202ENST00000378839 THOC7Q6I9Y2 204 aaKnown RBP12.47□□□□□ -0.41
CCDC3-202ENST00000378839 TUBA3EQ6PEY2 450 aa12.47□□□□□ -0.41
CCDC3-202ENST00000378839 B3GLCTQ6Y288 498 aa12.47□□□□□ -0.41
CCDC3-202ENST00000378839 USP30Q70CQ3 517 aa12.47□□□□□ -0.41
CCDC3-202ENST00000378839 GALNT12Q8IXK2 581 aa12.47□□□□□ -0.41
CCDC3-202ENST00000378839 ZFP41Q8N8Y5 198 aa12.47□□□□□ -0.41
CCDC3-202ENST00000378839 OR13H1Q8NG92 308 aa12.47□□□□□ -0.41
CCDC3-202ENST00000378839 OR4K14Q8NGD5 310 aa12.47□□□□□ -0.41
CCDC3-202ENST00000378839 ASB15Q8WXK1 588 aa12.47□□□□□ -0.41
CCDC3-202ENST00000378839 CLIP3Q96DZ5 547 aa12.47□□□□□ -0.41
CCDC3-202ENST00000378839 MS4A4EQ96PG1 132 aa12.47□□□□□ -0.41
CCDC3-202ENST00000378839 SDF2Q99470 211 aa12.47□□□□□ -0.41
CCDC3-202ENST00000378839 MCHR1Q99705 422 aa12.47□□□□□ -0.41
CCDC3-202ENST00000378839 PRSS27Q9BQR3 290 aa12.47□□□□□ -0.41
CCDC3-202ENST00000378839 SNTG1Q9NSN8 517 aa12.47□□□□□ -0.41
CCDC3-202ENST00000378839 SF3B6Q9Y3B4 125 aaKnown RBP12.47□□□□□ -0.41
CCDC3-202ENST00000378839 HYKKA2RU49 373 aa12.47□□□□□ -0.41
CCDC3-202ENST00000378839 PEX12O00623 359 aa12.47□□□□□ -0.41
CCDC3-202ENST00000378839 AQP9O43315 295 aa12.47□□□□□ -0.41
CCDC3-202ENST00000378839 APBB3O95704 486 aa12.47□□□□□ -0.41
CCDC3-202ENST00000378839 LIMS3P0CW19 117 aa12.47□□□□□ -0.41
CCDC3-202ENST00000378839 LIMS4P0CW20 117 aa12.47□□□□□ -0.41
CCDC3-202ENST00000378839 CPMP14384 443 aa12.47□□□□□ -0.41
CCDC3-202ENST00000378839 ALOX12P18054 663 aa12.47□□□□□ -0.41
CCDC3-202ENST00000378839 HNRNPA2B1P22626 353 aaKnown RBP12.47□□□□□ -0.41
CCDC3-202ENST00000378839 RPS25P62851 125 aaKnown RBP12.47□□□□□ -0.41
CCDC3-202ENST00000378839 MXD1Q05195 221 aa12.47□□□□□ -0.41
CCDC3-202ENST00000378839 MLLT11Q13015 90 aaPredicted RBP12.47□□□□□ -0.41
CCDC3-202ENST00000378839 FZD5Q13467 585 aa12.47□□□□□ -0.41
CCDC3-202ENST00000378839 KIR2DS3Q14952 304 aa12.47□□□□□ -0.41
CCDC3-202ENST00000378839 NDUFA9Q16795 377 aa12.47□□□□□ -0.41
CCDC3-202ENST00000378839 ZNF181Q2M3W8 571 aa12.47□□□□□ -0.41
CCDC3-202ENST00000378839 EXOSC6Q5RKV6 272 aaKnown RBP12.47□□□□□ -0.41
CCDC3-202ENST00000378839 SLC27A4Q6P1M0 643 aa12.47□□□□□ -0.41
CCDC3-202ENST00000378839 Q6ZSR6 202 aa12.47□□□□□ -0.41
CCDC3-202ENST00000378839 GDPD3Q7L5L3 318 aa12.47□□□□□ -0.41
CCDC3-202ENST00000378839 SYT14Q8NB59 555 aa12.47□□□□□ -0.41
CCDC3-202ENST00000378839 ANKK1Q8NFD2 765 aa12.47□□□□□ -0.41
CCDC3-202ENST00000378839 SLC41A3Q96GZ6 507 aa12.47□□□□□ -0.41
CCDC3-202ENST00000378839 SERINC2Q96SA4 455 aa12.47□□□□□ -0.41
CCDC3-202ENST00000378839 TPK1Q9H3S4 243 aa12.47□□□□□ -0.41
CCDC3-202ENST00000378839 IL21RQ9HBE5 538 aa12.47□□□□□ -0.41
CCDC3-202ENST00000378839 MRPS18AQ9NVS2 196 aaKnown RBP12.47□□□□□ -0.41
CCDC3-202ENST00000378839 ZNF229Q9UJW7 825 aa12.47□□□□□ -0.41
CCDC3-202ENST00000378839 SLC7A7Q9UM01 511 aa12.47□□□□□ -0.41
CCDC3-202ENST00000378839 STUB1Q9UNE7 303 aa12.47□□□□□ -0.41
CCDC3-202ENST00000378839 PIAS3Q9Y6X2 628 aa12.47□□□□□ -0.41
CCDC3-202ENST00000378839 ZGLP1P0C6A0 271 aa12.46□□□□□ -0.41
CCDC3-202ENST00000378839 SLC35G6P0C7Q6 338 aa12.46□□□□□ -0.41
CCDC3-202ENST00000378839 CCNYL3P0C7X3 344 aa12.46□□□□□ -0.41
CCDC3-202ENST00000378839 ACADMP11310 421 aa12.46□□□□□ -0.41
CCDC3-202ENST00000378839 GABRG2P18507 467 aa12.46□□□□□ -0.41
CCDC3-202ENST00000378839 MGAT2Q10469 447 aa12.46□□□□□ -0.41
CCDC3-202ENST00000378839 GPR68Q15743 365 aa12.46□□□□□ -0.41
CCDC3-202ENST00000378839 ARHGAP11BQ3KRB8 267 aa12.46□□□□□ -0.41
CCDC3-202ENST00000378839 RASSF6Q6ZTQ3 369 aa12.46□□□□□ -0.41
CCDC3-202ENST00000378839 SPATC1Q76KD6 591 aa12.46□□□□□ -0.41
CCDC3-202ENST00000378839 ZAR1Q86SH2 424 aa12.46□□□□□ -0.41
CCDC3-202ENST00000378839 TRIM69Q86WT6 500 aa12.46□□□□□ -0.41
CCDC3-202ENST00000378839 LAX1Q8IWV1 398 aa12.46□□□□□ -0.41
CCDC3-202ENST00000378839 POC5Q8NA72 575 aa12.46□□□□□ -0.41
CCDC3-202ENST00000378839 OR4F15Q8NGB8 312 aa12.46□□□□□ -0.41
CCDC3-202ENST00000378839 GPR151Q8TDV0 419 aa12.46□□□□□ -0.41
CCDC3-202ENST00000378839 NUAK2Q9H093 628 aa12.46□□□□□ -0.41
CCDC3-202ENST00000378839 RACGAP1Q9H0H5 632 aa12.46□□□□□ -0.41
CCDC3-202ENST00000378839 SLC28A3Q9HAS3 691 aa12.46□□□□□ -0.41
CCDC3-202ENST00000378839 TXNL4BQ9NX01 149 aaKnown RBP12.46□□□□□ -0.41
CCDC3-202ENST00000378839 MUTYHQ9UIF7 546 aa12.46□□□□□ -0.41
CCDC3-202ENST00000378839 UGT2A1Q9Y4X1 527 aa12.46□□□□□ -0.41
CCDC3-202ENST00000378839 KDM4EB2RXH2 506 aaPredicted RBP12.46□□□□□ -0.41
CCDC3-202ENST00000378839 C10orf142B7Z368 130 aa12.46□□□□□ -0.41
CCDC3-202ENST00000378839 ZNF670-ZNF695F2Z2N8 137 aa12.46□□□□□ -0.41
CCDC3-202ENST00000378839 CYR61O00622 381 aa12.46□□□□□ -0.41
CCDC3-202ENST00000378839 SURF4O15260 269 aa12.46□□□□□ -0.41
CCDC3-202ENST00000378839 LYPD3O95274 346 aa12.46□□□□□ -0.41
CCDC3-202ENST00000378839 CPEP16870 476 aa12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms