RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 R3HCC1LQ7Z5L2 792 aaKnown RBP19.66■□□□□ 0.74
CCDC28B-201ENST00000373602 TMEM200AQ86VY9 491 aa19.66■□□□□ 0.74
CCDC28B-201ENST00000373602 ZZZ3Q8IYH5 903 aa19.66■□□□□ 0.74
CCDC28B-201ENST00000373602 AGR3Q8TD06 166 aa19.66■□□□□ 0.74
CCDC28B-201ENST00000373602 PIK3R3Q92569 461 aa19.66■□□□□ 0.74
CCDC28B-201ENST00000373602 WNT2BQ93097 391 aa19.66■□□□□ 0.74
CCDC28B-201ENST00000373602 GIMAP5Q96F15 307 aa19.66■□□□□ 0.74
CCDC28B-201ENST00000373602 ZFP3Q96NJ6 502 aa19.66■□□□□ 0.74
CCDC28B-201ENST00000373602 TM9SF2Q99805 663 aa19.66■□□□□ 0.74
CCDC28B-201ENST00000373602 EQTNQ9NQ60 294 aa19.66■□□□□ 0.74
CCDC28B-201ENST00000373602 MED11Q9P086 117 aa19.66■□□□□ 0.74
CCDC28B-201ENST00000373602 CLCF1Q9UBD9 225 aa19.66■□□□□ 0.74
CCDC28B-201ENST00000373602 NOL12Q9UGY1 213 aaKnown RBP eCLIP19.66■□□□□ 0.74
CCDC28B-201ENST00000373602 ATP6V1HQ9UI12 483 aa19.66■□□□□ 0.74
CCDC28B-201ENST00000373602 V9GYY5 206 aaPredicted RBP19.66■□□□□ 0.74
CCDC28B-201ENST00000373602 OTOGQ6ZRI0 2925 aa19.65■□□□□ 0.74
CCDC28B-201ENST00000373602 TMEM114B3SHH9 223 aa19.65■□□□□ 0.74
CCDC28B-201ENST00000373602 RCBTB2O95199 551 aa19.65■□□□□ 0.74
CCDC28B-201ENST00000373602 KCNH1O95259 989 aa19.65■□□□□ 0.74
CCDC28B-201ENST00000373602 UTS2O95399 124 aa19.65■□□□□ 0.74
CCDC28B-201ENST00000373602 IGKV1D-16P01601 117 aa19.65■□□□□ 0.74
CCDC28B-201ENST00000373602 TMIGD3P0DMS9 266 aaPredicted RBP19.65■□□□□ 0.74
CCDC28B-201ENST00000373602 TCEA1P23193 301 aaKnown RBP19.65■□□□□ 0.74
CCDC28B-201ENST00000373602 MAPK1P28482 360 aa19.65■□□□□ 0.74
CCDC28B-201ENST00000373602 ETV4P43268 484 aa19.65■□□□□ 0.74
CCDC28B-201ENST00000373602 AGFG1P52594 562 aaKnown RBP19.65■□□□□ 0.74
CCDC28B-201ENST00000373602 DGKQP52824 942 aa19.65■□□□□ 0.74
CCDC28B-201ENST00000373602 STX5Q13190 355 aa19.65■□□□□ 0.74
CCDC28B-201ENST00000373602 VPS26BQ4G0F5 336 aa19.65■□□□□ 0.74
CCDC28B-201ENST00000373602 MARCH3Q86UD3 253 aa19.65■□□□□ 0.74
CCDC28B-201ENST00000373602 CDRT4Q8N9R6 151 aa19.65■□□□□ 0.74
CCDC28B-201ENST00000373602 NUP43Q8NFH3 380 aa19.65■□□□□ 0.74
CCDC28B-201ENST00000373602 GPR151Q8TDV0 419 aa19.65■□□□□ 0.74
CCDC28B-201ENST00000373602 MS4A4EQ96PG1 132 aa19.65■□□□□ 0.74
CCDC28B-201ENST00000373602 JKAMPQ9P055 326 aa19.65■□□□□ 0.74
CCDC28B-201ENST00000373602 GIMAP2Q9UG22 337 aa19.65■□□□□ 0.74
CCDC28B-201ENST00000373602 ZDHHC2Q9UIJ5 367 aa19.65■□□□□ 0.74
CCDC28B-201ENST00000373602 CCDC168Q8NDH2 2452 aa19.64■□□□□ 0.74
CCDC28B-201ENST00000373602 EMC8O43402 210 aa19.64■□□□□ 0.73
CCDC28B-201ENST00000373602 PEX11AO75192 247 aa19.64■□□□□ 0.73
CCDC28B-201ENST00000373602 DDX5P17844 614 aaKnown RBP19.64■□□□□ 0.73
CCDC28B-201ENST00000373602 HK1P19367 917 aa19.64■□□□□ 0.73
CCDC28B-201ENST00000373602 POU3F2P20265 443 aaPredicted RBP19.64■□□□□ 0.73
CCDC28B-201ENST00000373602 PRKAG1P54619 331 aa19.64■□□□□ 0.73
CCDC28B-201ENST00000373602 FOXF2Q12947 444 aa19.64■□□□□ 0.73
CCDC28B-201ENST00000373602 GANABQ14697 944 aaKnown RBP19.64■□□□□ 0.73
CCDC28B-201ENST00000373602 MLC1Q15049 377 aa19.64■□□□□ 0.73
CCDC28B-201ENST00000373602 DUSP19Q8WTR2 217 aa19.64■□□□□ 0.73
CCDC28B-201ENST00000373602 RMND5BQ96G75 393 aaPredicted RBP19.64■□□□□ 0.73
CCDC28B-201ENST00000373602 C3orf30Q96M34 536 aa19.64■□□□□ 0.73
CCDC28B-201ENST00000373602 SFXN3Q9BWM7 321 aa19.64■□□□□ 0.73
CCDC28B-201ENST00000373602 PTGES2Q9H7Z7 377 aa19.64■□□□□ 0.73
CCDC28B-201ENST00000373602 CRIM1Q9NZV1 1036 aa19.64■□□□□ 0.73
CCDC28B-201ENST00000373602 IGLV3-32A0A0A0MS00 114 aa19.63■□□□□ 0.73
CCDC28B-201ENST00000373602 SCAMP2O15127 329 aaKnown RBP19.63■□□□□ 0.73
CCDC28B-201ENST00000373602 HCRTR2O43614 444 aa19.63■□□□□ 0.73
CCDC28B-201ENST00000373602 ZNF500O60304 480 aaPredicted RBP19.63■□□□□ 0.73
CCDC28B-201ENST00000373602 CTAG2O75638 210 aa19.63■□□□□ 0.73
CCDC28B-201ENST00000373602 ACP2P11117 423 aa19.63■□□□□ 0.73
CCDC28B-201ENST00000373602 PEPDP12955 493 aa19.63■□□□□ 0.73
CCDC28B-201ENST00000373602 HPCAL1P37235 193 aa19.63■□□□□ 0.73
CCDC28B-201ENST00000373602 RPL3P39023 403 aaKnown RBP19.63■□□□□ 0.73
CCDC28B-201ENST00000373602 PRR5P85299 388 aa19.63■□□□□ 0.73
CCDC28B-201ENST00000373602 TESK1Q15569 626 aa19.63■□□□□ 0.73
CCDC28B-201ENST00000373602 GRAMD1BQ3KR37 738 aa19.63■□□□□ 0.73
CCDC28B-201ENST00000373602 ATP6AP1LQ52LC2 224 aa19.63■□□□□ 0.73
CCDC28B-201ENST00000373602 EXOSC6Q5RKV6 272 aaKnown RBP19.63■□□□□ 0.73
CCDC28B-201ENST00000373602 C6orf136Q5SQH8 315 aa19.63■□□□□ 0.73
CCDC28B-201ENST00000373602 MFSD12Q6NUT3 480 aa19.63■□□□□ 0.73
CCDC28B-201ENST00000373602 ZCCHC12Q6PEW1 402 aa19.63■□□□□ 0.73
CCDC28B-201ENST00000373602 PLXDC2Q6UX71 529 aa19.63■□□□□ 0.73
CCDC28B-201ENST00000373602 APOOLQ6UXV4 268 aa19.63■□□□□ 0.73
CCDC28B-201ENST00000373602 EXOC3L1Q86VI1 746 aa19.63■□□□□ 0.73
CCDC28B-201ENST00000373602 FAM222BQ8WU58 562 aa19.63■□□□□ 0.73
CCDC28B-201ENST00000373602 SLC9A6Q92581 669 aa19.63■□□□□ 0.73
CCDC28B-201ENST00000373602 PARD6BQ9BYG5 372 aa19.63■□□□□ 0.73
CCDC28B-201ENST00000373602 TBL1XR1Q9BZK7 514 aa19.63■□□□□ 0.73
CCDC28B-201ENST00000373602 ACBD3Q9H3P7 528 aa19.63■□□□□ 0.73
CCDC28B-201ENST00000373602 FAM221AA4D161 298 aa19.62■□□□□ 0.73
CCDC28B-201ENST00000373602 EEF1E1-BLOC1S5C9J1V9 151 aa19.62■□□□□ 0.73
CCDC28B-201ENST00000373602 LINC01387J3KSC0 135 aa19.62■□□□□ 0.73
CCDC28B-201ENST00000373602 EEF1E1O43324 174 aaKnown RBP19.62■□□□□ 0.73
CCDC28B-201ENST00000373602 LYPLA1O75608 230 aaPredicted RBP19.62■□□□□ 0.73
CCDC28B-201ENST00000373602 ANGPTL1O95841 491 aa19.62■□□□□ 0.73
CCDC28B-201ENST00000373602 EFNA1P20827 205 aaPredicted RBP19.62■□□□□ 0.73
CCDC28B-201ENST00000373602 ZNF844Q08AG5 666 aa19.62■□□□□ 0.73
CCDC28B-201ENST00000373602 C17orf67Q0P5P2 114 aa19.62■□□□□ 0.73
CCDC28B-201ENST00000373602 KRT71Q3SY84 523 aa19.62■□□□□ 0.73
CCDC28B-201ENST00000373602 FLYWCH1Q4VC44 716 aa19.62■□□□□ 0.73
CCDC28B-201ENST00000373602 RAET1LQ5VY80 246 aa19.62■□□□□ 0.73
CCDC28B-201ENST00000373602 SZRD1Q7Z422 152 aa19.62■□□□□ 0.73
CCDC28B-201ENST00000373602 KIF18BQ86Y91 864 aa19.62■□□□□ 0.73
CCDC28B-201ENST00000373602 SLC16A11Q8NCK7 471 aa19.62■□□□□ 0.73
CCDC28B-201ENST00000373602 OR7A2PQ8NGA2 310 aa19.62■□□□□ 0.73
CCDC28B-201ENST00000373602 FAM110BQ8TC76 370 aa19.62■□□□□ 0.73
CCDC28B-201ENST00000373602 INTS12Q96CB8 462 aaKnown RBP19.62■□□□□ 0.73
CCDC28B-201ENST00000373602 FAM120BQ96EK7 910 aaKnown RBP19.62■□□□□ 0.73
CCDC28B-201ENST00000373602 C1GALT1C1Q96EU7 318 aa19.62■□□□□ 0.73
CCDC28B-201ENST00000373602 C16orf58Q96GQ5 468 aa19.62■□□□□ 0.73
CCDC28B-201ENST00000373602 SIRT3Q9NTG7 399 aaPredicted RBP19.62■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms