RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 B3GNT7Q8NFL0 401 aa10.81□□□□□ -0.68
PTPRF-203ENST00000372407 NDNFQ8TB73 568 aa10.81□□□□□ -0.68
PTPRF-203ENST00000372407 TRMT10AQ8TBZ6 339 aaKnown RBP10.81□□□□□ -0.68
PTPRF-203ENST00000372407 ASB15Q8WXK1 588 aa10.81□□□□□ -0.68
PTPRF-203ENST00000372407 FOXJ1Q92949 421 aa10.81□□□□□ -0.68
PTPRF-203ENST00000372407 EGLN2Q96KS0 407 aa10.81□□□□□ -0.68
PTPRF-203ENST00000372407 ZFYVE21Q9BQ24 234 aa10.81□□□□□ -0.68
PTPRF-203ENST00000372407 LDAHQ9H6V9 325 aa10.81□□□□□ -0.68
PTPRF-203ENST00000372407 A0A0U1RQS6 177 aa10.8□□□□□ -0.68
PTPRF-203ENST00000372407 NPC1O15118 1278 aa10.8□□□□□ -0.68
PTPRF-203ENST00000372407 AMY2AP04746 511 aa10.8□□□□□ -0.68
PTPRF-203ENST00000372407 CTSAP10619 480 aa10.8□□□□□ -0.68
PTPRF-203ENST00000372407 FBLP22087 321 aaKnown RBP10.8□□□□□ -0.68
PTPRF-203ENST00000372407 GALK2Q01415 458 aa10.8□□□□□ -0.68
PTPRF-203ENST00000372407 MFSD13AQ14CX5 517 aa10.8□□□□□ -0.68
PTPRF-203ENST00000372407 ACVR1CQ8NER5 493 aa10.8□□□□□ -0.68
PTPRF-203ENST00000372407 HAVCR2Q8TDQ0 301 aa10.8□□□□□ -0.68
PTPRF-203ENST00000372407 MR1Q95460 341 aa10.8□□□□□ -0.68
PTPRF-203ENST00000372407 PEX11GQ96HA9 241 aa10.8□□□□□ -0.68
PTPRF-203ENST00000372407 PITX2Q99697 317 aa10.8□□□□□ -0.68
PTPRF-203ENST00000372407 PCDHA9Q9Y5H5 950 aa10.8□□□□□ -0.68
PTPRF-203ENST00000372407 CEPT1Q9Y6K0 416 aa10.8□□□□□ -0.68
PTPRF-203ENST00000372407 CSNK1G3Q9Y6M4 447 aa10.8□□□□□ -0.68
PTPRF-203ENST00000372407 LRP5O75197 1615 aa10.8□□□□□ -0.68
PTPRF-203ENST00000372407 TMEM189-UBE2V1I3L0A0 370 aa10.8□□□□□ -0.68
PTPRF-203ENST00000372407 DUX1O43812 170 aa10.8□□□□□ -0.68
PTPRF-203ENST00000372407 IFNA2P01563 188 aa10.8□□□□□ -0.68
PTPRF-203ENST00000372407 CAPNS1P04632 268 aa10.8□□□□□ -0.68
PTPRF-203ENST00000372407 EDN1P05305 212 aa10.8□□□□□ -0.68
PTPRF-203ENST00000372407 PER3P56645 1201 aa10.8□□□□□ -0.68
PTPRF-203ENST00000372407 SLC14A2Q15849 920 aa10.8□□□□□ -0.68
PTPRF-203ENST00000372407 TCTE1Q5JU00 501 aa10.8□□□□□ -0.68
PTPRF-203ENST00000372407 LCTLQ6UWM7 567 aa10.8□□□□□ -0.68
PTPRF-203ENST00000372407 BEND4Q6ZU67 534 aa10.8□□□□□ -0.68
PTPRF-203ENST00000372407 CBLL1Q75N03 491 aa10.8□□□□□ -0.68
PTPRF-203ENST00000372407 C3orf58Q8NDZ4 430 aa10.8□□□□□ -0.68
PTPRF-203ENST00000372407 HOXB13Q92826 284 aaPredicted RBP10.8□□□□□ -0.68
PTPRF-203ENST00000372407 ISG20Q96AZ6 181 aaKnown RBP10.8□□□□□ -0.68
PTPRF-203ENST00000372407 PDLIM5Q96HC4 596 aaKnown RBP10.8□□□□□ -0.68
PTPRF-203ENST00000372407 OR1F2PQ96R84 312 aa10.8□□□□□ -0.68
PTPRF-203ENST00000372407 GPR174Q9BXC1 333 aa10.8□□□□□ -0.68
PTPRF-203ENST00000372407 PINK1Q9BXM7 581 aa10.8□□□□□ -0.68
PTPRF-203ENST00000372407 DPH1Q9BZG8 443 aa10.8□□□□□ -0.68
PTPRF-203ENST00000372407 THSD1Q9NS62 852 aa10.8□□□□□ -0.68
PTPRF-203ENST00000372407 MROH6A6NGR9 719 aa10.8□□□□□ -0.68
PTPRF-203ENST00000372407 GABRR3A8MPY1 467 aa10.8□□□□□ -0.68
PTPRF-203ENST00000372407 CDK1P06493 297 aa10.8□□□□□ -0.68
PTPRF-203ENST00000372407 SELENOVP59797 346 aa10.8□□□□□ -0.68
PTPRF-203ENST00000372407 SNRPD2P62316 118 aaKnown RBP10.8□□□□□ -0.68
PTPRF-203ENST00000372407 GBX1Q14549 363 aa10.8□□□□□ -0.68
PTPRF-203ENST00000372407 CLLU1OSQ5K130 101 aa10.8□□□□□ -0.68
PTPRF-203ENST00000372407 KIF18BQ86Y91 864 aa10.8□□□□□ -0.68
PTPRF-203ENST00000372407 CNOT9Q92600 299 aaKnown RBP10.8□□□□□ -0.68
PTPRF-203ENST00000372407 SLC6A16Q9GZN6 736 aa10.8□□□□□ -0.68
PTPRF-203ENST00000372407 A0A0G2JMP0 313 aa10.8□□□□□ -0.68
PTPRF-203ENST00000372407 DIRAS3O95661 229 aa10.8□□□□□ -0.68
PTPRF-203ENST00000372407 CHMP24386 653 aa10.8□□□□□ -0.68
PTPRF-203ENST00000372407 MAGEA3P43357 314 aa10.8□□□□□ -0.68
PTPRF-203ENST00000372407 RGS6P49758 472 aa10.8□□□□□ -0.68
PTPRF-203ENST00000372407 RAB40BQ12829 278 aa10.8□□□□□ -0.68
PTPRF-203ENST00000372407 ARHGAP19Q14CB8 494 aa10.8□□□□□ -0.68
PTPRF-203ENST00000372407 TBCEQ15813 527 aaPredicted RBP10.8□□□□□ -0.68
PTPRF-203ENST00000372407 DESI1Q6ICB0 168 aa10.8□□□□□ -0.68
PTPRF-203ENST00000372407 GALNT6Q8NCL4 622 aa10.8□□□□□ -0.68
PTPRF-203ENST00000372407 OR4M2Q8NGB6 313 aa10.8□□□□□ -0.68
PTPRF-203ENST00000372407 OR5AK2Q8NH90 309 aa10.8□□□□□ -0.68
PTPRF-203ENST00000372407 ZFP90Q8TF47 636 aa10.8□□□□□ -0.68
PTPRF-203ENST00000372407 DEDD2Q8WXF8 326 aa10.8□□□□□ -0.68
PTPRF-203ENST00000372407 TSACCQ96A04 125 aaPredicted RBP10.8□□□□□ -0.68
PTPRF-203ENST00000372407 CIDECQ96AQ7 238 aaPredicted RBP10.8□□□□□ -0.68
PTPRF-203ENST00000372407 UBXN10Q96LJ8 280 aa10.8□□□□□ -0.68
PTPRF-203ENST00000372407 LPAR4Q99677 370 aa10.8□□□□□ -0.68
PTPRF-203ENST00000372407 MRI1Q9BV20 369 aa10.8□□□□□ -0.68
PTPRF-203ENST00000372407 C20orf27Q9GZN8 174 aa10.8□□□□□ -0.68
PTPRF-203ENST00000372407 CCDC86Q9H6F5 360 aaKnown RBP10.8□□□□□ -0.68
PTPRF-203ENST00000372407 SHANK3Q9BYB0 1731 aa10.8□□□□□ -0.68
PTPRF-203ENST00000372407 TCRBV21S2A2A0A5A6 115 aa10.79□□□□□ -0.68
PTPRF-203ENST00000372407 FAM155AB1AL88 458 aaPredicted RBP10.79□□□□□ -0.68
PTPRF-203ENST00000372407 SYNGR4O95473 234 aa10.79□□□□□ -0.68
PTPRF-203ENST00000372407 CCR7P32248 378 aa10.79□□□□□ -0.68
PTPRF-203ENST00000372407 MC3RP41968 323 aa10.79□□□□□ -0.68
PTPRF-203ENST00000372407 PRPS1P60891 318 aa10.79□□□□□ -0.68
PTPRF-203ENST00000372407 SERTAD2Q14140 314 aa10.79□□□□□ -0.68
PTPRF-203ENST00000372407 USF2Q15853 346 aaPredicted RBP10.79□□□□□ -0.68
PTPRF-203ENST00000372407 ZNF542PQ5EBM4 170 aa10.79□□□□□ -0.68
PTPRF-203ENST00000372407 RAB41Q5JT25 222 aa10.79□□□□□ -0.68
PTPRF-203ENST00000372407 GSG1LQ6UXU4 331 aa10.79□□□□□ -0.68
PTPRF-203ENST00000372407 OR5D16Q8NGK9 328 aa10.79□□□□□ -0.68
PTPRF-203ENST00000372407 ACOT11Q8WXI4 607 aaPredicted RBP10.79□□□□□ -0.68
PTPRF-203ENST00000372407 LINC00597Q9H2U6 94 aa10.79□□□□□ -0.68
PTPRF-203ENST00000372407 ENY2Q9NPA8 101 aa10.79□□□□□ -0.68
PTPRF-203ENST00000372407 POT1Q9NUX5 634 aa10.79□□□□□ -0.68
PTPRF-203ENST00000372407 PIGBOS1A0A0B4J2F0 54 aa10.79□□□□□ -0.68
PTPRF-203ENST00000372407 EEF1E1-BLOC1S5C9J1V9 151 aa10.79□□□□□ -0.68
PTPRF-203ENST00000372407 LATO43561 262 aa10.79□□□□□ -0.68
PTPRF-203ENST00000372407 PRAMEF2O60811 474 aa10.79□□□□□ -0.68
PTPRF-203ENST00000372407 PPP1R3DO95685 299 aa10.79□□□□□ -0.68
PTPRF-203ENST00000372407 PAHP00439 452 aa10.79□□□□□ -0.68
PTPRF-203ENST00000372407 ALDOCP09972 364 aaKnown RBP10.79□□□□□ -0.68
PTPRF-203ENST00000372407 NSDHLQ15738 373 aa10.79□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms