RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 SENP1Q9P0U3 644 aa12.4□□□□□ -0.42
VPS29-201ENST00000360579 CDC42EP3Q9UKI2 254 aa12.4□□□□□ -0.42
VPS29-201ENST00000360579 MCTS1Q9ULC4 181 aaKnown RBP12.4□□□□□ -0.42
VPS29-201ENST00000360579 HEATR5AQ86XA9 2040 aa12.4□□□□□ -0.42
VPS29-201ENST00000360579 C17orf51A8MQB3 221 aa12.39□□□□□ -0.43
VPS29-201ENST00000360579 FADS1O60427 444 aa12.39□□□□□ -0.43
VPS29-201ENST00000360579 PLOD3O60568 738 aa12.39□□□□□ -0.43
VPS29-201ENST00000360579 CD3EP07766 207 aa12.39□□□□□ -0.43
VPS29-201ENST00000360579 SOD3P08294 240 aa12.39□□□□□ -0.43
VPS29-201ENST00000360579 DANCRP0C864 163 aa12.39□□□□□ -0.43
VPS29-201ENST00000360579 ACVR1BP36896 505 aa12.39□□□□□ -0.43
VPS29-201ENST00000360579 EIF1AXP47813 144 aaKnown RBP12.39□□□□□ -0.43
VPS29-201ENST00000360579 TRAF3Q13114 568 aa12.39□□□□□ -0.43
VPS29-201ENST00000360579 STX5Q13190 355 aa12.39□□□□□ -0.43
VPS29-201ENST00000360579 CYP27C1Q4G0S4 372 aa12.39□□□□□ -0.43
VPS29-201ENST00000360579 SGO1Q5FBB7 561 aa12.39□□□□□ -0.43
VPS29-201ENST00000360579 FAM180BQ6P0A1 224 aa12.39□□□□□ -0.43
VPS29-201ENST00000360579 CREG2Q8IUH2 290 aa12.39□□□□□ -0.43
VPS29-201ENST00000360579 OR5M1Q8NGP8 315 aa12.39□□□□□ -0.43
VPS29-201ENST00000360579 OR9A2Q8NGT5 310 aa12.39□□□□□ -0.43
VPS29-201ENST00000360579 SELENOMQ8WWX9 145 aa12.39□□□□□ -0.43
VPS29-201ENST00000360579 KAT2AQ92830 837 aa12.39□□□□□ -0.43
VPS29-201ENST00000360579 MTBPQ96DY7 904 aa12.39□□□□□ -0.43
VPS29-201ENST00000360579 HS6ST2Q96MM7 605 aa12.39□□□□□ -0.43
VPS29-201ENST00000360579 SHCBP1LQ9BZQ2 653 aa12.39□□□□□ -0.43
VPS29-201ENST00000360579 HHATLQ9HCP6 504 aa12.39□□□□□ -0.43
VPS29-201ENST00000360579 FAM120CQ9NX05 1096 aaKnown RBP12.39□□□□□ -0.43
VPS29-201ENST00000360579 MRTO4Q9UKD2 239 aaKnown RBP12.39□□□□□ -0.43
VPS29-201ENST00000360579 NFU1Q9UMS0 254 aa12.39□□□□□ -0.43
VPS29-201ENST00000360579 SNX6Q9UNH7 406 aa12.39□□□□□ -0.43
VPS29-201ENST00000360579 LIPT1Q9Y234 373 aa12.39□□□□□ -0.43
VPS29-201ENST00000360579 A0A096LPK6 155 aa12.38□□□□□ -0.43
VPS29-201ENST00000360579 A0A1W2PP18 115 aa12.38□□□□□ -0.43
VPS29-201ENST00000360579 STX16-NPEPL1H3BU86 382 aa12.38□□□□□ -0.43
VPS29-201ENST00000360579 EIF1AYO14602 144 aaKnown RBP12.38□□□□□ -0.43
VPS29-201ENST00000360579 STX16O14662 325 aa12.38□□□□□ -0.43
VPS29-201ENST00000360579 CLOCKO15516 846 aa12.38□□□□□ -0.43
VPS29-201ENST00000360579 DLX3O60479 287 aa12.38□□□□□ -0.43
VPS29-201ENST00000360579 COQ9O75208 318 aa12.38□□□□□ -0.43
VPS29-201ENST00000360579 SYNGR4O95473 234 aa12.38□□□□□ -0.43
VPS29-201ENST00000360579 ZNF17P17021 662 aa12.38□□□□□ -0.43
VPS29-201ENST00000360579 MPIP34949 423 aa12.38□□□□□ -0.43
VPS29-201ENST00000360579 CDKN1AP38936 164 aa12.38□□□□□ -0.43
VPS29-201ENST00000360579 PAFAH1B1P43034 410 aa12.38□□□□□ -0.43
VPS29-201ENST00000360579 PSMD4P55036 377 aaKnown RBP12.38□□□□□ -0.43
VPS29-201ENST00000360579 DECR1Q16698 335 aa12.38□□□□□ -0.43
VPS29-201ENST00000360579 CPEB4Q17RY0 729 aaKnown RBP eCLIP12.38□□□□□ -0.43
VPS29-201ENST00000360579 GTF2IRD2BQ6EKJ0 949 aa12.38□□□□□ -0.43
VPS29-201ENST00000360579 DNAJC14Q6Y2X3 702 aaPredicted RBP12.38□□□□□ -0.43
VPS29-201ENST00000360579 DNM1P46Q6ZS02 220 aa12.38□□□□□ -0.43
VPS29-201ENST00000360579 GTF2IRD2Q86UP8 949 aa12.38□□□□□ -0.43
VPS29-201ENST00000360579 GGNQ86UU5 652 aa12.38□□□□□ -0.43
VPS29-201ENST00000360579 WDR75Q8IWA0 830 aaKnown RBP12.38□□□□□ -0.43
VPS29-201ENST00000360579 C1orf52Q8N6N3 182 aaKnown RBP12.38□□□□□ -0.43
VPS29-201ENST00000360579 OR4F6Q8NGB9 312 aa12.38□□□□□ -0.43
VPS29-201ENST00000360579 OR4N2Q8NGD1 307 aa12.38□□□□□ -0.43
VPS29-201ENST00000360579 RAB3IL1Q8TBN0 382 aa12.38□□□□□ -0.43
VPS29-201ENST00000360579 FBF1Q8TES7 1133 aa12.38□□□□□ -0.43
VPS29-201ENST00000360579 DUSP19Q8WTR2 217 aa12.38□□□□□ -0.43
VPS29-201ENST00000360579 PHF21BQ96EK2 531 aa12.38□□□□□ -0.43
VPS29-201ENST00000360579 GPR78Q96P69 363 aa12.38□□□□□ -0.43
VPS29-201ENST00000360579 USB1Q9BQ65 265 aaKnown RBP12.38□□□□□ -0.43
VPS29-201ENST00000360579 AMBRA1Q9C0C7 1298 aa12.38□□□□□ -0.43
VPS29-201ENST00000360579 ALG2Q9H553 416 aa12.38□□□□□ -0.43
VPS29-201ENST00000360579 ANKRA2Q9H9E1 313 aa12.38□□□□□ -0.43
VPS29-201ENST00000360579 PCTPQ9UKL6 214 aa12.38□□□□□ -0.43
VPS29-201ENST00000360579 CLEC4AQ9UMR7 237 aa12.38□□□□□ -0.43
VPS29-201ENST00000360579 MAGED1Q9Y5V3 778 aaPredicted RBP12.38□□□□□ -0.43
VPS29-201ENST00000360579 IGLV3-32A0A0A0MS00 114 aa12.37□□□□□ -0.43
VPS29-201ENST00000360579 C3orf80F5H4A9 247 aa12.37□□□□□ -0.43
VPS29-201ENST00000360579 ADAM11O75078 769 aa12.37□□□□□ -0.43
VPS29-201ENST00000360579 SLITRK5O94991 958 aa12.37□□□□□ -0.43
VPS29-201ENST00000360579 OTCP00480 354 aa12.37□□□□□ -0.43
VPS29-201ENST00000360579 PDYNP01213 254 aa12.37□□□□□ -0.43
VPS29-201ENST00000360579 IGHV4-39P01824 125 aa12.37□□□□□ -0.43
VPS29-201ENST00000360579 TUBBP07437 444 aa12.37□□□□□ -0.43
VPS29-201ENST00000360579 THBS1P07996 1170 aa12.37□□□□□ -0.43
VPS29-201ENST00000360579 RBP1P09455 135 aa12.37□□□□□ -0.43
VPS29-201ENST00000360579 SLC6A8P48029 635 aa12.37□□□□□ -0.43
VPS29-201ENST00000360579 PSG6Q00889 435 aa12.37□□□□□ -0.43
VPS29-201ENST00000360579 C17orf67Q0P5P2 114 aa12.37□□□□□ -0.43
VPS29-201ENST00000360579 ZNF155Q12901 538 aaPredicted RBP12.37□□□□□ -0.43
VPS29-201ENST00000360579 HEPACAMQ14CZ8 416 aa12.37□□□□□ -0.43
VPS29-201ENST00000360579 TMEM44Q2T9K0 475 aa12.37□□□□□ -0.43
VPS29-201ENST00000360579 CTU2Q2VPK5 515 aaKnown RBP12.37□□□□□ -0.43
VPS29-201ENST00000360579 ZNF672Q499Z4 452 aaPredicted RBP12.37□□□□□ -0.43
VPS29-201ENST00000360579 TECRLQ5HYJ1 363 aa12.37□□□□□ -0.43
VPS29-201ENST00000360579 SH2D4BQ5SQS7 431 aa12.37□□□□□ -0.43
VPS29-201ENST00000360579 NCMAPQ5T1S8 102 aa12.37□□□□□ -0.43
VPS29-201ENST00000360579 MROH9Q5TGP6 573 aa12.37□□□□□ -0.43
VPS29-201ENST00000360579 ALKBH2Q6NS38 261 aa12.37□□□□□ -0.43
VPS29-201ENST00000360579 FAM9CQ8IZT9 166 aa12.37□□□□□ -0.43
VPS29-201ENST00000360579 OR10D3Q8NH80 312 aa12.37□□□□□ -0.43
VPS29-201ENST00000360579 LILRB1Q8NHL6 650 aaPredicted RBP12.37□□□□□ -0.43
VPS29-201ENST00000360579 HSD17B8Q92506 261 aa12.37□□□□□ -0.43
VPS29-201ENST00000360579 EXOSC8Q96B26 276 aaKnown RBP12.37□□□□□ -0.43
VPS29-201ENST00000360579 S100PBPQ96BU1 408 aa12.37□□□□□ -0.43
VPS29-201ENST00000360579 C11orf24Q96F05 449 aaPredicted RBP12.37□□□□□ -0.43
VPS29-201ENST00000360579 ERP44Q9BS26 406 aa12.37□□□□□ -0.43
VPS29-201ENST00000360579 RHNO1Q9BSD3 238 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms