RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 SF3B4Q15427 424 aaKnown RBP eCLIP18.07■□□□□ 0.485e-7■■■■□ 19.5
COL9A3-201ENST00000343916 ZNF836Q6ZNA1 936 aa18.07■□□□□ 0.48
COL9A3-201ENST00000343916 Q8N9G6 341 aaPredicted RBP18.07■□□□□ 0.48
COL9A3-201ENST00000343916 TMEM52Q8NDY8 209 aa18.07■□□□□ 0.48
COL9A3-201ENST00000343916 ANKK1Q8NFD2 765 aa18.07■□□□□ 0.48
COL9A3-201ENST00000343916 PIGXQ8TBF5 258 aa18.07■□□□□ 0.48
COL9A3-201ENST00000343916 GATAD2BQ8WXI9 593 aa18.07■□□□□ 0.48
COL9A3-201ENST00000343916 SP140LQ9H930 580 aa18.07■□□□□ 0.48
COL9A3-201ENST00000343916 CPNE5Q9HCH3 593 aa18.07■□□□□ 0.48
COL9A3-201ENST00000343916 ERVK13-1Q9NX77 482 aa18.07■□□□□ 0.48
COL9A3-201ENST00000343916 SEC14L4Q9UDX3 406 aa18.07■□□□□ 0.48
COL9A3-201ENST00000343916 PILRAQ9UKJ1 303 aa18.07■□□□□ 0.48
COL9A3-201ENST00000343916 SPIN1Q9Y657 262 aaPredicted RBP18.07■□□□□ 0.48
COL9A3-201ENST00000343916 LRRC72A6NJI9 287 aa18.06■□□□□ 0.48
COL9A3-201ENST00000343916 PRODHO43272 600 aa18.06■□□□□ 0.48
COL9A3-201ENST00000343916 CPMP14384 443 aa18.06■□□□□ 0.48
COL9A3-201ENST00000343916 IFNGR2P38484 337 aa18.06■□□□□ 0.48
COL9A3-201ENST00000343916 CDC20Q12834 499 aa18.06■□□□□ 0.48
COL9A3-201ENST00000343916 SLC36A4Q6YBV0 504 aa18.06■□□□□ 0.48
COL9A3-201ENST00000343916 Q6ZSR6 202 aa18.06■□□□□ 0.48
COL9A3-201ENST00000343916 RASSF6Q6ZTQ3 369 aa18.06■□□□□ 0.48
COL9A3-201ENST00000343916 CCDC190Q86UF4 302 aa18.06■□□□□ 0.48
COL9A3-201ENST00000343916 AKAP14Q86UN6 197 aa18.06■□□□□ 0.48
COL9A3-201ENST00000343916 OR4Q3Q8NH05 313 aa18.06■□□□□ 0.48
COL9A3-201ENST00000343916 TM9SF4Q92544 642 aa18.06■□□□□ 0.48
COL9A3-201ENST00000343916 SLC41A3Q96GZ6 507 aa18.06■□□□□ 0.48
COL9A3-201ENST00000343916 FBXO34Q9NWN3 711 aa18.06■□□□□ 0.48
COL9A3-201ENST00000343916 C14orf119Q9NWQ9 140 aa18.06■□□□□ 0.48
COL9A3-201ENST00000343916 SLC7A7Q9UM01 511 aa18.06■□□□□ 0.48
COL9A3-201ENST00000343916 SLC22A7Q9Y694 548 aa18.06■□□□□ 0.48
COL9A3-201ENST00000343916 NPIPA5A0A0B4J1W7 369 aa18.06■□□□□ 0.48
COL9A3-201ENST00000343916 TCRBV21S2A2A0A5A6 115 aa18.06■□□□□ 0.48
COL9A3-201ENST00000343916 ISPDA4D126 451 aa18.06■□□□□ 0.48
COL9A3-201ENST00000343916 NPIPA7E9PJI5 369 aa18.06■□□□□ 0.48
COL9A3-201ENST00000343916 H0YGG7 62 aa18.06■□□□□ 0.48
COL9A3-201ENST00000343916 SNPHO15079 494 aa18.06■□□□□ 0.48
COL9A3-201ENST00000343916 TNFSF14O43557 240 aa18.06■□□□□ 0.48
COL9A3-201ENST00000343916 CELA2BP08218 269 aaPredicted RBP18.06■□□□□ 0.48
COL9A3-201ENST00000343916 NPIPA8P0DM63 369 aa18.06■□□□□ 0.48
COL9A3-201ENST00000343916 MYL12AP19105 171 aa18.06■□□□□ 0.48
COL9A3-201ENST00000343916 TLX1P31314 330 aaPredicted RBP18.06■□□□□ 0.48
COL9A3-201ENST00000343916 CD79BP40259 229 aa18.06■□□□□ 0.48
COL9A3-201ENST00000343916 MTNR1AP48039 350 aa18.06■□□□□ 0.48
COL9A3-201ENST00000343916 ARF3P61204 181 aaPredicted RBP18.06■□□□□ 0.48
COL9A3-201ENST00000343916 PPP1CAP62136 330 aa18.06■□□□□ 0.48
COL9A3-201ENST00000343916 RNLSQ5VYX0 342 aa18.06■□□□□ 0.48
COL9A3-201ENST00000343916 UTS2BQ765I0 119 aa18.06■□□□□ 0.48
COL9A3-201ENST00000343916 GALNT12Q8IXK2 581 aa18.06■□□□□ 0.48
COL9A3-201ENST00000343916 FLCNQ8NFG4 579 aa18.06■□□□□ 0.48
COL9A3-201ENST00000343916 ACOT11Q8WXI4 607 aaPredicted RBP18.06■□□□□ 0.48
COL9A3-201ENST00000343916 PIK3R3Q92569 461 aa18.06■□□□□ 0.48
COL9A3-201ENST00000343916 CEP19Q96LK0 163 aa18.06■□□□□ 0.48
COL9A3-201ENST00000343916 SDF2Q99470 211 aa18.06■□□□□ 0.48
COL9A3-201ENST00000343916 SDHCQ99643 169 aaPredicted RBP18.06■□□□□ 0.48
COL9A3-201ENST00000343916 ZFYVE21Q9BQ24 234 aa18.06■□□□□ 0.48
COL9A3-201ENST00000343916 MTHFD2LQ9H903 347 aaPredicted RBP18.06■□□□□ 0.48
COL9A3-201ENST00000343916 STARD5Q9NSY2 213 aa18.06■□□□□ 0.48
COL9A3-201ENST00000343916 NTMQ9P121 344 aa18.06■□□□□ 0.48
COL9A3-201ENST00000343916 HYKKA2RU49 373 aa18.05■□□□□ 0.48
COL9A3-201ENST00000343916 FGF17O60258 216 aa18.05■□□□□ 0.48
COL9A3-201ENST00000343916 PRG2P13727 222 aa18.05■□□□□ 0.48
COL9A3-201ENST00000343916 IFNA8P32881 189 aa18.05■□□□□ 0.48
COL9A3-201ENST00000343916 KHDRBS1Q07666 443 aaKnown RBP eCLIP18.05■□□□□ 0.48
COL9A3-201ENST00000343916 DBPQ10586 325 aaPredicted RBP18.05■□□□□ 0.48
COL9A3-201ENST00000343916 MAPK14Q16539 360 aa18.05■□□□□ 0.48
COL9A3-201ENST00000343916 TRIM69Q86WT6 500 aa18.05■□□□□ 0.48
COL9A3-201ENST00000343916 PEX5LQ8IYB4 626 aa18.05■□□□□ 0.48
COL9A3-201ENST00000343916 OR9Q1Q8NGQ5 310 aa18.05■□□□□ 0.48
COL9A3-201ENST00000343916 RIPOR3Q96MK2 946 aa18.05■□□□□ 0.48
COL9A3-201ENST00000343916 NELL2Q99435 816 aa18.05■□□□□ 0.48
COL9A3-201ENST00000343916 SMURF1Q9HCE7 757 aa18.05■□□□□ 0.48
COL9A3-201ENST00000343916 SPEGQ15772 3267 aa18.05■□□□□ 0.48
COL9A3-201ENST00000343916 ZNF670-ZNF695F2Z2N8 137 aa18.05■□□□□ 0.48
COL9A3-201ENST00000343916 CDC42EP2O14613 210 aa18.05■□□□□ 0.48
COL9A3-201ENST00000343916 GKN3PP0CG01 181 aa18.05■□□□□ 0.48
COL9A3-201ENST00000343916 TNFSF8P32971 234 aa18.05■□□□□ 0.48
COL9A3-201ENST00000343916 NR4A2P43354 598 aa18.05■□□□□ 0.48
COL9A3-201ENST00000343916 USP53Q70EK8 1073 aa18.05■□□□□ 0.48
COL9A3-201ENST00000343916 ABHD13Q7L211 337 aa18.05■□□□□ 0.48
COL9A3-201ENST00000343916 GJD3Q8N144 294 aa18.05■□□□□ 0.48
COL9A3-201ENST00000343916 OR13H1Q8NG92 308 aa18.05■□□□□ 0.48
COL9A3-201ENST00000343916 SLC38A2Q96QD8 506 aa18.05■□□□□ 0.48
COL9A3-201ENST00000343916 RACGAP1Q9H0H5 632 aa18.05■□□□□ 0.48
COL9A3-201ENST00000343916 CLDND1Q9NY35 253 aa18.05■□□□□ 0.48
COL9A3-201ENST00000343916 KLHL3Q9UH77 587 aa18.05■□□□□ 0.48
COL9A3-201ENST00000343916 SSR3Q9UNL2 185 aa18.05■□□□□ 0.48
COL9A3-201ENST00000343916 UGT2A1Q9Y4X1 527 aa18.05■□□□□ 0.48
COL9A3-201ENST00000343916 SMIM30A4D0T7 59 aa18.04■□□□□ 0.48
COL9A3-201ENST00000343916 URADA6NGE7 173 aa18.04■□□□□ 0.48
COL9A3-201ENST00000343916 SLC2A10O95528 541 aa18.04■□□□□ 0.48
COL9A3-201ENST00000343916 WNT4P56705 351 aa18.04■□□□□ 0.48
COL9A3-201ENST00000343916 SHC2P98077 582 aa18.04■□□□□ 0.48
COL9A3-201ENST00000343916 ILF3Q12906 894 aaKnown RBP eCLIP18.04■□□□□ 0.48
COL9A3-201ENST00000343916 ARHGAP11BQ3KRB8 267 aa18.04■□□□□ 0.48
COL9A3-201ENST00000343916 KLHL22Q53GT1 634 aa18.04■□□□□ 0.48
COL9A3-201ENST00000343916 ZNF628Q5EBL2 1059 aa18.04■□□□□ 0.48
COL9A3-201ENST00000343916 C22orf42Q6IC83 251 aa18.04■□□□□ 0.48
COL9A3-201ENST00000343916 ZNF438Q7Z4V0 828 aa18.04■□□□□ 0.48
COL9A3-201ENST00000343916 MRGPREQ86SM8 312 aa18.04■□□□□ 0.48
COL9A3-201ENST00000343916 SLC22A18ASQ8N1D0 253 aa18.04■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms