RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 ZCCHC3Q9NUD5 404 aaKnown RBP14.43□□□□□ -0.1
CLN3-201ENST00000333496 MAPRE3Q9UPY8 281 aa14.43□□□□□ -0.1
CLN3-201ENST00000333496 WIF1Q9Y5W5 379 aa14.43□□□□□ -0.1
CLN3-201ENST00000333496 SNX8Q9Y5X2 465 aa14.43□□□□□ -0.1
CLN3-201ENST00000333496 ADGRG4Q8IZF6 3080 aa14.43□□□□□ -0.1
CLN3-201ENST00000333496 GOLGA8QA0A0J9YX86 632 aa14.42□□□□□ -0.1
CLN3-201ENST00000333496 GOLGA8OA6NCC3 632 aa14.42□□□□□ -0.1
CLN3-201ENST00000333496 GOLGA8NF8WBI6 632 aa14.42□□□□□ -0.1
CLN3-201ENST00000333496 BCKDKO14874 412 aa14.42□□□□□ -0.1
CLN3-201ENST00000333496 HMGN2P05204 90 aaKnown RBP14.42□□□□□ -0.1
CLN3-201ENST00000333496 VIMP08670 466 aaKnown RBP14.42□□□□□ -0.1
CLN3-201ENST00000333496 EVI2BP34910 448 aa14.42□□□□□ -0.1
CLN3-201ENST00000333496 CCT3P49368 545 aaKnown RBP14.42□□□□□ -0.1
CLN3-201ENST00000333496 MRPS22P82650 360 aaKnown RBP14.42□□□□□ -0.1
CLN3-201ENST00000333496 PRR5P85299 388 aa14.42□□□□□ -0.1
CLN3-201ENST00000333496 LSM12Q3MHD2 195 aaKnown RBP14.42□□□□□ -0.1
CLN3-201ENST00000333496 OR5M10Q6IEU7 315 aa14.42□□□□□ -0.1
CLN3-201ENST00000333496 ZCCHC12Q6PEW1 402 aa14.42□□□□□ -0.1
CLN3-201ENST00000333496 CLECL1Q8IZS7 167 aa14.42□□□□□ -0.1
CLN3-201ENST00000333496 ZNF808Q8N4W9 903 aaPredicted RBP14.42□□□□□ -0.1
CLN3-201ENST00000333496 OR8J2Q8NGG1 315 aa14.42□□□□□ -0.1
CLN3-201ENST00000333496 PIWIL2Q8TC59 973 aaKnown RBP14.42□□□□□ -0.1
CLN3-201ENST00000333496 GPR151Q8TDV0 419 aa14.42□□□□□ -0.1
CLN3-201ENST00000333496 LRRC8CQ8TDW0 803 aa14.42□□□□□ -0.1
CLN3-201ENST00000333496 SARAFQ96BY9 339 aa14.42□□□□□ -0.1
CLN3-201ENST00000333496 OTUB1Q96FW1 271 aaPredicted RBP14.42□□□□□ -0.1
CLN3-201ENST00000333496 RMND5BQ96G75 393 aaPredicted RBP14.42□□□□□ -0.1
CLN3-201ENST00000333496 MAELQ96JY0 434 aaKnown RBP14.42□□□□□ -0.1
CLN3-201ENST00000333496 TEX37Q96LM6 180 aa14.42□□□□□ -0.1
CLN3-201ENST00000333496 SERHLQ9NQF3 203 aa14.42□□□□□ -0.1
CLN3-201ENST00000333496 TRPC5OSA6NMA1 111 aa14.41□□□□□ -0.1
CLN3-201ENST00000333496 SLCO1B7G3V0H7 640 aa14.41□□□□□ -0.1
CLN3-201ENST00000333496 RFX3P48380 749 aa14.41□□□□□ -0.1
CLN3-201ENST00000333496 LASP1Q14847 261 aaKnown RBP14.41□□□□□ -0.1
CLN3-201ENST00000333496 VPS26BQ4G0F5 336 aa14.41□□□□□ -0.1
CLN3-201ENST00000333496 SLC9B1Q4ZJI4 515 aa14.41□□□□□ -0.1
CLN3-201ENST00000333496 EIPR1Q53HC9 387 aa14.41□□□□□ -0.1
CLN3-201ENST00000333496 WIPI1Q5MNZ9 446 aaPredicted RBP14.41□□□□□ -0.1
CLN3-201ENST00000333496 RTL6Q6ICC9 239 aa14.41□□□□□ -0.1
CLN3-201ENST00000333496 RPTNQ6XPR3 784 aa14.41□□□□□ -0.1
CLN3-201ENST00000333496 GALNT10Q86SR1 603 aa14.41□□□□□ -0.1
CLN3-201ENST00000333496 PLCZ1Q86YW0 608 aa14.41□□□□□ -0.1
CLN3-201ENST00000333496 FAM83FQ8NEG4 500 aaPredicted RBP14.41□□□□□ -0.1
CLN3-201ENST00000333496 FAM110BQ8TC76 370 aa14.41□□□□□ -0.1
CLN3-201ENST00000333496 TESCQ96BS2 214 aa14.41□□□□□ -0.1
CLN3-201ENST00000333496 AIG1Q9NVV5 245 aa14.41□□□□□ -0.1
CLN3-201ENST00000333496 GPATCH2Q9NW75 528 aa14.41□□□□□ -0.1
CLN3-201ENST00000333496 FBXO34Q9NWN3 711 aa14.41□□□□□ -0.1
CLN3-201ENST00000333496 FBXL2Q9UKC9 423 aa14.41□□□□□ -0.1
CLN3-201ENST00000333496 ACAD8Q9UKU7 415 aa14.41□□□□□ -0.1
CLN3-201ENST00000333496 SLC6A5Q9Y345 797 aa14.41□□□□□ -0.1
CLN3-201ENST00000333496 HCFC1P51610 2035 aa14.41□□□□□ -0.1
CLN3-201ENST00000333496 CELSR2Q9HCU4 2923 aa14.41□□□□□ -0.1
CLN3-201ENST00000333496 RNASET2O00584 256 aaKnown RBP14.41□□□□□ -0.1
CLN3-201ENST00000333496 CFLARO15519 480 aa14.41□□□□□ -0.1
CLN3-201ENST00000333496 CBR3O75828 277 aa14.41□□□□□ -0.1
CLN3-201ENST00000333496 KCNK2O95069 426 aa14.41□□□□□ -0.1
CLN3-201ENST00000333496 CRYZQ08257 329 aaKnown RBP14.41□□□□□ -0.1
CLN3-201ENST00000333496 TOMM20Q15388 145 aa14.41□□□□□ -0.1
CLN3-201ENST00000333496 SPANXN4Q5MJ08 99 aa14.41□□□□□ -0.1
CLN3-201ENST00000333496 ZNF585AQ6P3V2 769 aa14.41□□□□□ -0.1
CLN3-201ENST00000333496 XKRXQ6PP77 449 aa14.41□□□□□ -0.1
CLN3-201ENST00000333496 APOOLQ6UXV4 268 aa14.41□□□□□ -0.1
CLN3-201ENST00000333496 SPATA19Q7Z5L4 167 aa14.41□□□□□ -0.1
CLN3-201ENST00000333496 PIGWQ7Z7B1 504 aa14.41□□□□□ -0.1
CLN3-201ENST00000333496 ZAR1Q86SH2 424 aa14.41□□□□□ -0.1
CLN3-201ENST00000333496 YRDCQ86U90 279 aaKnown RBP14.41□□□□□ -0.1
CLN3-201ENST00000333496 OR5AK3PQ8NH89 298 aa14.41□□□□□ -0.1
CLN3-201ENST00000333496 NEUROD4Q9HD90 331 aa14.41□□□□□ -0.1
CLN3-201ENST00000333496 SLCO1B3Q9NPD5 702 aa14.41□□□□□ -0.1
CLN3-201ENST00000333496 MRTO4Q9UKD2 239 aaKnown RBP14.41□□□□□ -0.1
CLN3-201ENST00000333496 FAM215AQ9Y5M1 114 aa14.41□□□□□ -0.1
CLN3-201ENST00000333496 GPR45Q9Y5Y3 372 aa14.41□□□□□ -0.1
CLN3-201ENST00000333496 SCO2O43819 266 aa14.4□□□□□ -0.1
CLN3-201ENST00000333496 KCNH1O95259 989 aa14.4□□□□□ -0.1
CLN3-201ENST00000333496 UTS2O95399 124 aa14.4□□□□□ -0.1
CLN3-201ENST00000333496 ALOX5P09917 674 aa14.4□□□□□ -0.1
CLN3-201ENST00000333496 AGAP20933 346 aa14.4□□□□□ -0.1
CLN3-201ENST00000333496 ACVR2AP27037 513 aa14.4□□□□□ -0.1
CLN3-201ENST00000333496 IL12AP29459 219 aa14.4□□□□□ -0.1
CLN3-201ENST00000333496 PRIM2P49643 509 aa14.4□□□□□ -0.1
CLN3-201ENST00000333496 PSMD4P55036 377 aaKnown RBP14.4□□□□□ -0.1
CLN3-201ENST00000333496 NME5P56597 212 aa14.4□□□□□ -0.1
CLN3-201ENST00000333496 UFM1P61960 85 aa14.4□□□□□ -0.1
CLN3-201ENST00000333496 TP53BP2Q13625 1128 aa14.4□□□□□ -0.1
CLN3-201ENST00000333496 WLSQ5T9L3 541 aa14.4□□□□□ -0.1
CLN3-201ENST00000333496 VASNQ6EMK4 673 aa14.4□□□□□ -0.1
CLN3-201ENST00000333496 CDC73Q6P1J9 531 aa14.4□□□□□ -0.1
CLN3-201ENST00000333496 EID3Q8N140 333 aa14.4□□□□□ -0.1
CLN3-201ENST00000333496 SFXN5Q8TD22 340 aa14.4□□□□□ -0.1
CLN3-201ENST00000333496 TIMP4Q99727 224 aa14.4□□□□□ -0.1
CLN3-201ENST00000333496 ABCG2Q9UNQ0 655 aa14.4□□□□□ -0.1
CLN3-201ENST00000333496 CACNA1DQ01668 2161 aa14.4□□□□□ -0.1
CLN3-201ENST00000333496 C15orf38-AP3S2A0A0A6YYH1 394 aa14.39□□□□□ -0.11
CLN3-201ENST00000333496 C9JVG2 144 aa14.39□□□□□ -0.11
CLN3-201ENST00000333496 BMP7P18075 431 aa14.39□□□□□ -0.11
CLN3-201ENST00000333496 KIR3DL1P43629 444 aa14.39□□□□□ -0.11
CLN3-201ENST00000333496 SMSP52788 366 aa14.39□□□□□ -0.11
CLN3-201ENST00000333496 ART3Q13508 389 aa14.39□□□□□ -0.11
CLN3-201ENST00000333496 CPEB4Q17RY0 729 aaKnown RBP eCLIP14.39□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms