RNA–Protein interactions for RNA: ENST00000332345.10

LIMS1-201, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 1,235 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-201ENST00000332345 SDR39U1Q9NRG7 319 aaPredicted RBP12.8□□□□□ -0.36
LIMS1-201ENST00000332345 GPATCH2Q9NW75 528 aa12.8□□□□□ -0.36
LIMS1-201ENST00000332345 BTNL2Q9UIR0 455 aa12.8□□□□□ -0.36
LIMS1-201ENST00000332345 SH3BGRL2Q9UJC5 107 aa12.8□□□□□ -0.36
LIMS1-201ENST00000332345 TINAGQ9UJW2 476 aa12.8□□□□□ -0.36
LIMS1-201ENST00000332345 ACAD8Q9UKU7 415 aa12.8□□□□□ -0.36
LIMS1-201ENST00000332345 C15orf41Q9Y2V0 281 aa12.8□□□□□ -0.36
LIMS1-201ENST00000332345 WIF1Q9Y5W5 379 aa12.8□□□□□ -0.36
LIMS1-201ENST00000332345 COL12A1Q99715 3063 aa12.8□□□□□ -0.36
LIMS1-201ENST00000332345 ZNHIT1O43257 154 aa12.79□□□□□ -0.36
LIMS1-201ENST00000332345 FADS1O60427 444 aa12.79□□□□□ -0.36
LIMS1-201ENST00000332345 HPNP05981 417 aa12.79□□□□□ -0.36
LIMS1-201ENST00000332345 MATN1P21941 496 aa12.79□□□□□ -0.36
LIMS1-201ENST00000332345 PTPN6P29350 595 aa12.79□□□□□ -0.36
LIMS1-201ENST00000332345 IL12AP29459 219 aa12.79□□□□□ -0.36
LIMS1-201ENST00000332345 DGKQP52824 942 aa12.79□□□□□ -0.36
LIMS1-201ENST00000332345 STX1BP61266 288 aa12.79□□□□□ -0.36
LIMS1-201ENST00000332345 IRX1P78414 480 aaPredicted RBP12.79□□□□□ -0.36
LIMS1-201ENST00000332345 CPEB4Q17RY0 729 aaKnown RBP eCLIP12.79□□□□□ -0.36
LIMS1-201ENST00000332345 GXYLT1Q4G148 440 aa12.79□□□□□ -0.36
LIMS1-201ENST00000332345 EXOSC6Q5RKV6 272 aaKnown RBP12.79□□□□□ -0.36
LIMS1-201ENST00000332345 FIGNL1Q6PIW4 674 aa12.79□□□□□ -0.36
LIMS1-201ENST00000332345 TRIML2Q8N7C3 387 aa12.79□□□□□ -0.36
LIMS1-201ENST00000332345 WDSUB1Q8N9V3 476 aa12.79□□□□□ -0.36
LIMS1-201ENST00000332345 OR5AK3PQ8NH89 298 aa12.79□□□□□ -0.36
LIMS1-201ENST00000332345 NEIL3Q8TAT5 605 aa12.79□□□□□ -0.36
LIMS1-201ENST00000332345 FBXO30Q8TB52 745 aa12.79□□□□□ -0.36
LIMS1-201ENST00000332345 RNF138Q8WVD3 245 aa12.79□□□□□ -0.36
LIMS1-201ENST00000332345 MARK4Q96L34 752 aa12.79□□□□□ -0.36
LIMS1-201ENST00000332345 CCDC115Q96NT0 180 aa12.79□□□□□ -0.36
LIMS1-201ENST00000332345 TBL1XR1Q9BZK7 514 aa12.79□□□□□ -0.36
LIMS1-201ENST00000332345 UBQLN3Q9H347 655 aa12.79□□□□□ -0.36
LIMS1-201ENST00000332345 LRRK2Q5S007 2527 aa12.79□□□□□ -0.36
LIMS1-201ENST00000332345 USP9XQ93008 2570 aaPredicted RBP12.78□□□□□ -0.36
LIMS1-201ENST00000332345 PCNX1Q96RV3 2341 aa12.78□□□□□ -0.36
LIMS1-201ENST00000332345 RNF103-CHMP3A0A140T963 221 aa12.78□□□□□ -0.36
LIMS1-201ENST00000332345 E9PLN8 166 aa12.78□□□□□ -0.36
LIMS1-201ENST00000332345 EDF1O60869 148 aaKnown RBP12.78□□□□□ -0.36
LIMS1-201ENST00000332345 AGR2O95994 175 aa12.78□□□□□ -0.36
LIMS1-201ENST00000332345 IGKV1D-16P01601 117 aa12.78□□□□□ -0.36
LIMS1-201ENST00000332345 HPGDP15428 266 aa12.78□□□□□ -0.36
LIMS1-201ENST00000332345 ATP6V1C1P21283 382 aa12.78□□□□□ -0.36
LIMS1-201ENST00000332345 GCKP35557 465 aa12.78□□□□□ -0.36
LIMS1-201ENST00000332345 CHI3L1P36222 383 aaPredicted RBP12.78□□□□□ -0.36
LIMS1-201ENST00000332345 TRPC1P48995 793 aa12.78□□□□□ -0.36
LIMS1-201ENST00000332345 POLR2JP52435 117 aaKnown RBP12.78□□□□□ -0.36
LIMS1-201ENST00000332345 GAS1P54826 345 aa12.78□□□□□ -0.36
LIMS1-201ENST00000332345 C17orf67Q0P5P2 114 aa12.78□□□□□ -0.36
LIMS1-201ENST00000332345 WLSQ5T9L3 541 aa12.78□□□□□ -0.36
LIMS1-201ENST00000332345 TMEM211Q6ICI0 200 aa12.78□□□□□ -0.36
LIMS1-201ENST00000332345 CD163Q86VB7 1156 aa12.78□□□□□ -0.36
LIMS1-201ENST00000332345 GOT1L1Q8NHS2 421 aaPredicted RBP12.78□□□□□ -0.36
LIMS1-201ENST00000332345 CDS1Q92903 461 aa12.78□□□□□ -0.36
LIMS1-201ENST00000332345 PANX1Q96RD7 426 aa12.78□□□□□ -0.36
LIMS1-201ENST00000332345 VKORC1Q9BQB6 163 aa12.78□□□□□ -0.36
LIMS1-201ENST00000332345 EBF4Q9BQW3 602 aa12.78□□□□□ -0.36
LIMS1-201ENST00000332345 SIKE1Q9BRV8 207 aa12.78□□□□□ -0.36
LIMS1-201ENST00000332345 HOXD1Q9GZZ0 328 aa12.78□□□□□ -0.36
LIMS1-201ENST00000332345 TP63Q9H3D4 680 aaPredicted RBP12.78□□□□□ -0.36
LIMS1-201ENST00000332345 RMND5AQ9H871 391 aa12.78□□□□□ -0.36
LIMS1-201ENST00000332345 SERHLQ9NQF3 203 aa12.78□□□□□ -0.36
LIMS1-201ENST00000332345 UBQLN4Q9NRR5 601 aa12.78□□□□□ -0.36
LIMS1-201ENST00000332345 PPP4R1LQ9P1A2 415 aa12.78□□□□□ -0.36
LIMS1-201ENST00000332345 MEMO1Q9Y316 297 aa12.78□□□□□ -0.36
LIMS1-201ENST00000332345 MRPS18CQ9Y3D5 142 aaKnown RBP12.78□□□□□ -0.36
LIMS1-201ENST00000332345 LIPGQ9Y5X9 500 aa12.78□□□□□ -0.36
LIMS1-201ENST00000332345 CCDC154A6NI56 674 aa12.77□□□□□ -0.37
LIMS1-201ENST00000332345 C9JVG2 144 aa12.77□□□□□ -0.37
LIMS1-201ENST00000332345 SCO2O43819 266 aa12.77□□□□□ -0.37
LIMS1-201ENST00000332345 NGFRP08138 427 aa12.77□□□□□ -0.37
LIMS1-201ENST00000332345 HOXD4P09016 255 aaPredicted RBP12.77□□□□□ -0.37
LIMS1-201ENST00000332345 TBXA2RP21731 343 aa12.77□□□□□ -0.37
LIMS1-201ENST00000332345 MRPL19P49406 292 aaKnown RBP12.77□□□□□ -0.37
LIMS1-201ENST00000332345 SMSP52788 366 aa12.77□□□□□ -0.37
LIMS1-201ENST00000332345 GRAMD1BQ3KR37 738 aa12.77□□□□□ -0.37
LIMS1-201ENST00000332345 OR5M10Q6IEU7 315 aa12.77□□□□□ -0.37
LIMS1-201ENST00000332345 ZNF621Q6ZSS3 439 aa12.77□□□□□ -0.37
LIMS1-201ENST00000332345 MSANTD1Q6ZTZ1 278 aa12.77□□□□□ -0.37
LIMS1-201ENST00000332345 MARCH3Q86UD3 253 aa12.77□□□□□ -0.37
LIMS1-201ENST00000332345 CLEC4FQ8N1N0 589 aa12.77□□□□□ -0.37
LIMS1-201ENST00000332345 FAM83FQ8NEG4 500 aaPredicted RBP12.77□□□□□ -0.37
LIMS1-201ENST00000332345 OR4K17Q8NGC6 315 aa12.77□□□□□ -0.37
LIMS1-201ENST00000332345 OR5M9Q8NGP3 310 aa12.77□□□□□ -0.37
LIMS1-201ENST00000332345 OR4C3Q8NH37 302 aa12.77□□□□□ -0.37
LIMS1-201ENST00000332345 MIPOL1Q8TD10 442 aa12.77□□□□□ -0.37
LIMS1-201ENST00000332345 DUSP19Q8WTR2 217 aa12.77□□□□□ -0.37
LIMS1-201ENST00000332345 STON2Q8WXE9 905 aa12.77□□□□□ -0.37
LIMS1-201ENST00000332345 OTUB1Q96FW1 271 aaPredicted RBP12.77□□□□□ -0.37
LIMS1-201ENST00000332345 SLC35G5Q96KT7 338 aa12.77□□□□□ -0.37
LIMS1-201ENST00000332345 PSMG3-AS1Q96PY0 264 aa12.77□□□□□ -0.37
LIMS1-201ENST00000332345 OR7D2Q96RA2 312 aa12.77□□□□□ -0.37
LIMS1-201ENST00000332345 SLC35A5Q9BS91 424 aa12.77□□□□□ -0.37
LIMS1-201ENST00000332345 SLC6A15Q9H2J7 730 aa12.77□□□□□ -0.37
LIMS1-201ENST00000332345 PTGES2Q9H7Z7 377 aa12.77□□□□□ -0.37
LIMS1-201ENST00000332345 EXD2Q9NVH0 621 aa12.77□□□□□ -0.37
LIMS1-201ENST00000332345 FLRT3Q9NZU0 649 aa12.77□□□□□ -0.37
LIMS1-201ENST00000332345 C15orf38-AP3S2A0A0A6YYH1 394 aa12.76□□□□□ -0.37
LIMS1-201ENST00000332345 FAM234BA2RU67 622 aa12.76□□□□□ -0.37
LIMS1-201ENST00000332345 FIGNL2A6NMB9 653 aa12.76□□□□□ -0.37
LIMS1-201ENST00000332345 ALG1L2C9J202 215 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 84.6 ms