RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 OR2M4Q96R27 311 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 MRPL17Q9NRX2 175 aaKnown RBP4.98□□□□□ -1.61
SCN1A-201ENST00000303395 PLEK2Q9NYT0 353 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 KCNIP1Q9NZI2 227 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 DKKL1Q9UK85 242 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 CDC14AQ9UNH5 594 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 AK6Q9Y3D8 172 aaKnown RBP4.98□□□□□ -1.61
SCN1A-201ENST00000303395 NCOR1O75376 2440 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 OR2A25A4D2G3 310 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 NPIPA5E9PKD4 350 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 TLR5O60602 858 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 TGFB1P01137 390 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 CD63P08962 238 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 TAS2R46P59540 309 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 MALLQ13021 153 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 AVPI1Q5T686 147 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 KDM4DQ6B0I6 523 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 SIGIRRQ6IA17 410 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 NOXRED1Q6NXP6 359 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 CD300LDQ6UXZ3 194 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 RNF148Q8N7C7 305 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 OR13C9Q8NGT0 318 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 SHKBP1Q8TBC3 707 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 MITD1Q8WV92 249 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 ZNF419Q96HQ0 510 aaPredicted RBP4.98□□□□□ -1.61
SCN1A-201ENST00000303395 ZNF75AQ96N20 296 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 CNN2Q99439 309 aaKnown RBP4.98□□□□□ -1.61
SCN1A-201ENST00000303395 JAM3Q9BX67 310 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 PINK1Q9BXM7 581 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 SLC19A3Q9BZV2 496 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 SLC28A3Q9HAS3 691 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 SGK2Q9HBY8 427 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 ZNF355PQ9NSJ1 428 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 NDUFB11Q9NX14 153 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 NPIPA1Q9UND3 350 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 GPR45Q9Y5Y3 372 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 ZDBF2Q9HCK1 2354 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 ZNF541Q9H0D2 1346 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 ZCWPW2A0A1B0GU75 182 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 CPSF4LA6NMK7 179 aaKnown RBP4.98□□□□□ -1.61
SCN1A-201ENST00000303395 HMSDA8MTL9 139 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 H0Y8G0 127 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 H7BYZ3 331 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 PCDH7O60245 1069 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 ALDOBP05062 364 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 GCAP28676 217 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 SERPINF1P36955 418 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 KCNC1P48547 511 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 GRIN2CQ14957 1233 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 FAM214AQ32MH5 1076 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 C9orf131Q5VYM1 1079 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 PLPP6Q8IY26 295 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 FBXL6Q8N531 539 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 OR10H4Q8NGA5 316 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 LHFPL5Q8TAF8 219 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 SORCS1Q8WY21 1168 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 PMEPA1Q969W9 287 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 TTPALQ9BTX7 342 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 SAMD10Q9BYL1 202 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 TP63Q9H3D4 680 aaPredicted RBP4.98□□□□□ -1.61
SCN1A-201ENST00000303395 LYRM2Q9NU23 88 aaPredicted RBP4.98□□□□□ -1.61
SCN1A-201ENST00000303395 CCL15-CCL14A0A0B4J2E2 113 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 SMIM28A0A1B0GU29 152 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 LINC00032P0C843 101 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 CCND3P30281 292 aaPredicted RBP4.98□□□□□ -1.61
SCN1A-201ENST00000303395 OPRL1P41146 370 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 TPMTP51580 245 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 ZNF92Q03936 586 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 CHIT1Q13231 466 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 CCL15Q16663 113 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 CARD17Q5XLA6 110 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 ABHD13Q7L211 337 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 SERINC5Q86VE9 423 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 MARCH9Q86YJ5 346 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 SUSD3Q96L08 255 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 CHIAQ9BZP6 476 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 DPEP3Q9H4B8 488 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 GPRC5CQ9NQ84 441 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 ST6GALNAC1Q9NSC7 600 aaPredicted RBP4.98□□□□□ -1.61
SCN1A-201ENST00000303395 FZD4Q9ULV1 537 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 PCDHGA1Q9Y5H4 931 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 AKAP11Q9UKA4 1901 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 DICER1Q9UPY3 1922 aaKnown RBP4.98□□□□□ -1.61
SCN1A-201ENST00000303395 RALGAPA1Q6GYQ0 2036 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 C1orf226A1L170 272 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 M0QZK8 103 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 GGCTO75223 188 aaKnown RBP4.98□□□□□ -1.61
SCN1A-201ENST00000303395 USP12O75317 370 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 IGFBP1P08833 259 aaPredicted RBP4.98□□□□□ -1.61
SCN1A-201ENST00000303395 USP17L7P0C7H9 530 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 TACR2P21452 398 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 GPX3P22352 226 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 SLC6A8P48029 635 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 EIF3IQ13347 325 aaKnown RBP4.98□□□□□ -1.61
SCN1A-201ENST00000303395 TPBGQ13641 420 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 PHF19Q5T6S3 580 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 PRPF38BQ5VTL8 546 aaKnown RBP4.98□□□□□ -1.61
SCN1A-201ENST00000303395 NXPE4Q6UWF7 544 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 TMUB2Q71RG4 321 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 TMEM156Q8N614 296 aa4.98□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms