RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 GLO1Q04760 184 aa13.25□□□□□ -0.29
CCDC88A-201ENST00000263630 PLA2G7Q13093 441 aa13.25□□□□□ -0.29
CCDC88A-201ENST00000263630 ZNF317Q96PQ6 595 aaPredicted RBP13.25□□□□□ -0.29
CCDC88A-201ENST00000263630 NKX3-1Q99801 234 aaPredicted RBP13.25□□□□□ -0.29
CCDC88A-201ENST00000263630 ZNF230Q9UIE0 474 aaPredicted RBP13.25□□□□□ -0.29
CCDC88A-201ENST00000263630 UBIAD1Q9Y5Z9 338 aa13.25□□□□□ -0.29
CCDC88A-201ENST00000263630 TRAV18A0A075B6X5 111 aa13.25□□□□□ -0.29
CCDC88A-201ENST00000263630 SRPXP78539 464 aa13.25□□□□□ -0.29
CCDC88A-201ENST00000263630 MFGE8Q08431 387 aaPredicted RBP13.25□□□□□ -0.29
CCDC88A-201ENST00000263630 KREMEN2Q8NCW0 462 aa13.25□□□□□ -0.29
CCDC88A-201ENST00000263630 MICU1Q9BPX6 476 aa13.25□□□□□ -0.29
CCDC88A-201ENST00000263630 ZNF416Q9BWM5 594 aa13.25□□□□□ -0.29
CCDC88A-201ENST00000263630 WDR6Q9NNW5 1121 aaKnown RBP13.25□□□□□ -0.29
CCDC88A-201ENST00000263630 CLTCQ00610 1675 aaKnown RBP13.25□□□□□ -0.29
CCDC88A-201ENST00000263630 USP2O75604 605 aaPredicted RBP13.25□□□□□ -0.29
CCDC88A-201ENST00000263630 PRRT3Q5FWE3 981 aa13.25□□□□□ -0.29
CCDC88A-201ENST00000263630 MBLAC2Q68D91 279 aa13.25□□□□□ -0.29
CCDC88A-201ENST00000263630 CNKSR3Q6P9H4 555 aa13.25□□□□□ -0.29
CCDC88A-201ENST00000263630 NIPA2Q8N8Q9 360 aa13.25□□□□□ -0.29
CCDC88A-201ENST00000263630 FER1L6Q2WGJ9 1857 aa13.25□□□□□ -0.29
CCDC88A-201ENST00000263630 LOC730098B7Z3J9 87 aa13.25□□□□□ -0.29
CCDC88A-201ENST00000263630 KRBOX1C9JBD0 128 aa13.25□□□□□ -0.29
CCDC88A-201ENST00000263630 DEFA4P12838 97 aa13.25□□□□□ -0.29
CCDC88A-201ENST00000263630 KDELR2P33947 212 aa13.25□□□□□ -0.29
CCDC88A-201ENST00000263630 FBXW12Q6X9E4 464 aa13.25□□□□□ -0.29
CCDC88A-201ENST00000263630 PSAT1Q9Y617 370 aa13.25□□□□□ -0.29
CCDC88A-201ENST00000263630 RNH1P13489 461 aaKnown RBP13.25□□□□□ -0.29
CCDC88A-201ENST00000263630 SLC14A1Q13336 389 aa13.25□□□□□ -0.29
CCDC88A-201ENST00000263630 ASPGQ86U10 573 aa13.25□□□□□ -0.29
CCDC88A-201ENST00000263630 CCDC116Q8IYX3 515 aa13.25□□□□□ -0.29
CCDC88A-201ENST00000263630 DMBX1Q8NFW5 382 aa13.25□□□□□ -0.29
CCDC88A-201ENST00000263630 MYOTQ9UBF9 498 aa13.25□□□□□ -0.29
CCDC88A-201ENST00000263630 ZDHHC2Q9UIJ5 367 aa13.25□□□□□ -0.29
CCDC88A-201ENST00000263630 CFAP20Q9Y6A4 193 aaKnown RBP13.25□□□□□ -0.29
CCDC88A-201ENST00000263630 IL3RAP26951 378 aa13.24□□□□□ -0.29
CCDC88A-201ENST00000263630 CRMP1Q14194 572 aa13.24□□□□□ -0.29
CCDC88A-201ENST00000263630 ZNF425Q6IV72 752 aa13.24□□□□□ -0.29
CCDC88A-201ENST00000263630 AGTRAPQ6RW13 159 aa13.24□□□□□ -0.29
CCDC88A-201ENST00000263630 CCDC74BQ96LY2 380 aa13.24□□□□□ -0.29
CCDC88A-201ENST00000263630 SMIM28A0A1B0GU29 152 aa13.24□□□□□ -0.29
CCDC88A-201ENST00000263630 ANXA7P20073 488 aaKnown RBP13.24□□□□□ -0.29
CCDC88A-201ENST00000263630 RBMS1P29558 406 aaKnown RBP13.24□□□□□ -0.29
CCDC88A-201ENST00000263630 AKR1C1Q04828 323 aa13.24□□□□□ -0.29
CCDC88A-201ENST00000263630 NKPD1Q17RQ9 610 aa13.24□□□□□ -0.29
CCDC88A-201ENST00000263630 SFRP4Q6FHJ7 346 aaPredicted RBP13.24□□□□□ -0.29
CCDC88A-201ENST00000263630 OR52P1PQ8NH57 321 aa13.24□□□□□ -0.29
CCDC88A-201ENST00000263630 SAP130Q9H0E3 1048 aa13.24□□□□□ -0.29
CCDC88A-201ENST00000263630 POMT1Q9Y6A1 747 aa13.24□□□□□ -0.29
CCDC88A-201ENST00000263630 LYRM1O43325 122 aa13.24□□□□□ -0.29
CCDC88A-201ENST00000263630 KCNK5O95279 499 aa13.24□□□□□ -0.29
CCDC88A-201ENST00000263630 CTRB1P17538 263 aa13.24□□□□□ -0.29
CCDC88A-201ENST00000263630 ARHGAP1Q07960 439 aa13.24□□□□□ -0.29
CCDC88A-201ENST00000263630 ZNF791Q3KP31 576 aaPredicted RBP13.24□□□□□ -0.29
CCDC88A-201ENST00000263630 ACSM3Q53FZ2 586 aa13.24□□□□□ -0.29
CCDC88A-201ENST00000263630 CTRB2Q6GPI1 263 aa13.24□□□□□ -0.29
CCDC88A-201ENST00000263630 OR4M1Q8NGD0 313 aa13.24□□□□□ -0.29
CCDC88A-201ENST00000263630 KIAA1191Q96A73 305 aa13.24□□□□□ -0.29
CCDC88A-201ENST00000263630 CCDC74AQ96AQ1 378 aa13.24□□□□□ -0.29
CCDC88A-201ENST00000263630 EBF4Q9BQW3 602 aa13.24□□□□□ -0.29
CCDC88A-201ENST00000263630 UFSP2Q9NUQ7 469 aa13.24□□□□□ -0.29
CCDC88A-201ENST00000263630 NLKQ9UBE8 527 aa13.24□□□□□ -0.29
CCDC88A-201ENST00000263630 ANKRD66B4E2M5 251 aa13.24□□□□□ -0.29
CCDC88A-201ENST00000263630 CLTCL1P53675 1640 aa13.24□□□□□ -0.29
CCDC88A-201ENST00000263630 PTTG1IPP53801 180 aa13.24□□□□□ -0.29
CCDC88A-201ENST00000263630 UBE2NLQ5JXB2 153 aa13.24□□□□□ -0.29
CCDC88A-201ENST00000263630 NDRG1Q92597 394 aaKnown RBP13.24□□□□□ -0.29
CCDC88A-201ENST00000263630 MIB2Q96AX9 1013 aa13.24□□□□□ -0.29
CCDC88A-201ENST00000263630 KLHDC7BQ96G42 594 aa13.24□□□□□ -0.29
CCDC88A-201ENST00000263630 CDKN2AIPNLQ96HQ2 116 aa13.24□□□□□ -0.29
CCDC88A-201ENST00000263630 C1orf226A1L170 272 aa13.24□□□□□ -0.29
CCDC88A-201ENST00000263630 CDHR4A6H8M9 788 aa13.24□□□□□ -0.29
CCDC88A-201ENST00000263630 MROH6A6NGR9 719 aa13.24□□□□□ -0.29
CCDC88A-201ENST00000263630 PENKP01210 267 aaPredicted RBP13.24□□□□□ -0.29
CCDC88A-201ENST00000263630 CD79AP11912 226 aa13.24□□□□□ -0.29
CCDC88A-201ENST00000263630 GDI1P31150 447 aa13.24□□□□□ -0.29
CCDC88A-201ENST00000263630 SNRPD2P62316 118 aaKnown RBP13.24□□□□□ -0.29
CCDC88A-201ENST00000263630 SBSNQ6UWP8 590 aa13.24□□□□□ -0.29
CCDC88A-201ENST00000263630 FJX1Q86VR8 437 aa13.24□□□□□ -0.29
CCDC88A-201ENST00000263630 OR51A7Q8NH64 312 aa13.24□□□□□ -0.29
CCDC88A-201ENST00000263630 PRRC1Q96M27 445 aa13.24□□□□□ -0.29
CCDC88A-201ENST00000263630 OR51F1A6NGY5 319 aa13.24□□□□□ -0.29
CCDC88A-201ENST00000263630 RFXAPO00287 272 aa13.24□□□□□ -0.29
CCDC88A-201ENST00000263630 HTRA2O43464 458 aaPredicted RBP13.24□□□□□ -0.29
CCDC88A-201ENST00000263630 ZNF28P17035 718 aa13.24□□□□□ -0.29
CCDC88A-201ENST00000263630 SLC6A8P48029 635 aa13.24□□□□□ -0.29
CCDC88A-201ENST00000263630 SRYQ05066 204 aa13.24□□□□□ -0.29
CCDC88A-201ENST00000263630 CATR1Q13166 79 aa13.24□□□□□ -0.29
CCDC88A-201ENST00000263630 MPEG1Q2M385 716 aa13.24□□□□□ -0.29
CCDC88A-201ENST00000263630 FAM43BQ6ZT52 329 aaPredicted RBP13.24□□□□□ -0.29
CCDC88A-201ENST00000263630 POPDC3Q9HBV1 291 aa13.24□□□□□ -0.29
CCDC88A-201ENST00000263630 TLR9Q9NR96 1032 aa13.24□□□□□ -0.29
CCDC88A-201ENST00000263630 ZNF355PQ9NSJ1 428 aa13.24□□□□□ -0.29
CCDC88A-201ENST00000263630 ZNF536O15090 1300 aa13.24□□□□□ -0.29
CCDC88A-201ENST00000263630 ASGR2P07307 311 aa13.24□□□□□ -0.29
CCDC88A-201ENST00000263630 DEFB118Q96PH6 123 aa13.24□□□□□ -0.29
CCDC88A-201ENST00000263630 ZCCHC11Q5TAX3 1644 aaKnown RBP13.24□□□□□ -0.29
CCDC88A-201ENST00000263630 DFFBO76075 338 aa13.24□□□□□ -0.29
CCDC88A-201ENST00000263630 C4BPAP04003 597 aaKnown RBP13.24□□□□□ -0.29
CCDC88A-201ENST00000263630 OR10J4P0C629 311 aa13.24□□□□□ -0.29
CCDC88A-201ENST00000263630 PCBD1P61457 104 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms