RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 CCDC86Q9H6F5 360 aaKnown RBP19.94■□□□□ 0.78
TRIM28-201ENST00000253024 ACSS1Q9NUB1 689 aaPredicted RBP19.94■□□□□ 0.78
TRIM28-201ENST00000253024 WSB2Q9NYS7 404 aaPredicted RBP19.94■□□□□ 0.78
TRIM28-201ENST00000253024 FBXL4Q9UKA2 621 aa19.94■□□□□ 0.78
TRIM28-201ENST00000253024 AP1M2Q9Y6Q5 423 aa19.94■□□□□ 0.78
TRIM28-201ENST00000253024 CENPXA8MT69 81 aa19.94■□□□□ 0.78
TRIM28-201ENST00000253024 CDK5Q00535 292 aa19.94■□□□□ 0.78
TRIM28-201ENST00000253024 PDGFRLQ15198 375 aa19.94■□□□□ 0.78
TRIM28-201ENST00000253024 NEIL3Q8TAT5 605 aa19.94■□□□□ 0.78
TRIM28-201ENST00000253024 ELP4Q96EB1 424 aa19.94■□□□□ 0.78
TRIM28-201ENST00000253024 ACAD8Q9UKU7 415 aa19.94■□□□□ 0.78
TRIM28-201ENST00000253024 SNX7Q9UNH6 387 aa19.94■□□□□ 0.78
TRIM28-201ENST00000253024 NOX1Q9Y5S8 564 aa19.94■□□□□ 0.78
TRIM28-201ENST00000253024 A0A075B6Q4 140 aa19.93■□□□□ 0.78
TRIM28-201ENST00000253024 LRRC72A6NJI9 287 aa19.93■□□□□ 0.78
TRIM28-201ENST00000253024 PRODHO43272 600 aa19.93■□□□□ 0.78
TRIM28-201ENST00000253024 TBXA2RP21731 343 aa19.93■□□□□ 0.78
TRIM28-201ENST00000253024 SLC1A3P43003 542 aa19.93■□□□□ 0.78
TRIM28-201ENST00000253024 SNAP47Q5SQN1 464 aa19.93■□□□□ 0.78
TRIM28-201ENST00000253024 IDNKQ5T6J7 187 aa19.93■□□□□ 0.78
TRIM28-201ENST00000253024 ZNF57Q68EA5 555 aaPredicted RBP19.93■□□□□ 0.78
TRIM28-201ENST00000253024 ZNF765Q7L2R6 523 aa19.93■□□□□ 0.78
TRIM28-201ENST00000253024 SIRT6Q8N6T7 355 aa19.93■□□□□ 0.78
TRIM28-201ENST00000253024 OR51A7Q8NH64 312 aa19.93■□□□□ 0.78
TRIM28-201ENST00000253024 RASSF5Q8WWW0 418 aa19.93■□□□□ 0.78
TRIM28-201ENST00000253024 LCN9Q8WX39 176 aa19.93■□□□□ 0.78
TRIM28-201ENST00000253024 SMARCD2Q92925 531 aa19.93■□□□□ 0.78
TRIM28-201ENST00000253024 SLC38A2Q96QD8 506 aa19.93■□□□□ 0.78
TRIM28-201ENST00000253024 CCDC32Q9BV29 185 aa19.93■□□□□ 0.78
TRIM28-201ENST00000253024 B3GAT2Q9NPZ5 323 aa19.93■□□□□ 0.78
TRIM28-201ENST00000253024 ZNF780BQ9Y6R6 833 aa19.93■□□□□ 0.78
TRIM28-201ENST00000253024 ARRDC5A6NEK1 342 aa19.93■□□□□ 0.78
TRIM28-201ENST00000253024 OR2W5A6NFC9 320 aa19.93■□□□□ 0.78
TRIM28-201ENST00000253024 ACP2P11117 423 aa19.93■□□□□ 0.78
TRIM28-201ENST00000253024 GCGRP47871 477 aa19.93■□□□□ 0.78
TRIM28-201ENST00000253024 HCCSP53701 268 aa19.93■□□□□ 0.78
TRIM28-201ENST00000253024 OCLNQ16625 522 aa19.93■□□□□ 0.78
TRIM28-201ENST00000253024 ZNF542PQ5EBM4 170 aa19.93■□□□□ 0.78
TRIM28-201ENST00000253024 TMEM201Q5SNT2 666 aa19.93■□□□□ 0.78
TRIM28-201ENST00000253024 ADAMTSL4Q6UY14 1074 aa19.93■□□□□ 0.78
TRIM28-201ENST00000253024 Q8N402 240 aa19.93■□□□□ 0.78
TRIM28-201ENST00000253024 RAB42Q8N4Z0 105 aa19.93■□□□□ 0.78
TRIM28-201ENST00000253024 DNAJA3Q96EY1 480 aa19.93■□□□□ 0.78
TRIM28-201ENST00000253024 C3orf14Q9HBI5 128 aa19.93■□□□□ 0.78
TRIM28-201ENST00000253024 HINT3Q9NQE9 182 aaKnown RBP19.93■□□□□ 0.78
TRIM28-201ENST00000253024 KLHL1Q9NR64 748 aa19.93■□□□□ 0.78
TRIM28-201ENST00000253024 C20orf141Q9NUB4 165 aa19.93■□□□□ 0.78
TRIM28-201ENST00000253024 ZSCAN32Q9NX65 697 aa19.93■□□□□ 0.78
TRIM28-201ENST00000253024 TBC1D29Q9UFV1 150 aa19.93■□□□□ 0.78
TRIM28-201ENST00000253024 PTPRSQ13332 1948 aa19.93■□□□□ 0.78
TRIM28-201ENST00000253024 PEX12O00623 359 aa19.92■□□□□ 0.78
TRIM28-201ENST00000253024 PLA2G10O15496 165 aa19.92■□□□□ 0.78
TRIM28-201ENST00000253024 FGF19O95750 216 aa19.92■□□□□ 0.78
TRIM28-201ENST00000253024 SLC2A2P11168 524 aaPredicted RBP19.92■□□□□ 0.78
TRIM28-201ENST00000253024 SLC9A3P48764 834 aa19.92■□□□□ 0.78
TRIM28-201ENST00000253024 OR5T3Q8NGG3 340 aa19.92■□□□□ 0.78
TRIM28-201ENST00000253024 USP36Q9P275 1121 aaKnown RBP19.92■□□□□ 0.78
TRIM28-201ENST00000253024 CLEC3AO75596 197 aa19.92■□□□□ 0.78
TRIM28-201ENST00000253024 CEACAM5P06731 702 aa19.92■□□□□ 0.78
TRIM28-201ENST00000253024 CPEP16870 476 aa19.92■□□□□ 0.78
TRIM28-201ENST00000253024 MYL9P24844 172 aa19.92■□□□□ 0.78
TRIM28-201ENST00000253024 MPIP34949 423 aa19.92■□□□□ 0.78
TRIM28-201ENST00000253024 FRKP42685 505 aaPredicted RBP19.92■□□□□ 0.78
TRIM28-201ENST00000253024 GAS1P54826 345 aa19.92■□□□□ 0.78
TRIM28-201ENST00000253024 PRR5P85299 388 aa19.92■□□□□ 0.78
TRIM28-201ENST00000253024 OR10H4Q8NGA5 316 aa19.92■□□□□ 0.78
TRIM28-201ENST00000253024 H2AFY2Q9P0M6 372 aaPredicted RBP19.92■□□□□ 0.78
TRIM28-201ENST00000253024 PTGFRNQ9P2B2 879 aa19.92■□□□□ 0.78
TRIM28-201ENST00000253024 WDFY3Q8IZQ1 3526 aa19.92■□□□□ 0.78
TRIM28-201ENST00000253024 CXorf51AA0A1B0GTR3 108 aa19.92■□□□□ 0.78
TRIM28-201ENST00000253024 INPP1P49441 399 aa19.92■□□□□ 0.78
TRIM28-201ENST00000253024 EXOSC7Q15024 291 aaKnown RBP19.92■□□□□ 0.78
TRIM28-201ENST00000253024 NNATQ16517 81 aa19.92■□□□□ 0.78
TRIM28-201ENST00000253024 MAPK14Q16539 360 aa19.92■□□□□ 0.78
TRIM28-201ENST00000253024 TRIQKQ629K1 86 aa19.92■□□□□ 0.78
TRIM28-201ENST00000253024 ARL9Q6T311 187 aa19.92■□□□□ 0.78
TRIM28-201ENST00000253024 PIGXQ8TBF5 258 aa19.92■□□□□ 0.78
TRIM28-201ENST00000253024 DHRS1Q96LJ7 313 aa19.92■□□□□ 0.78
TRIM28-201ENST00000253024 CFHR5Q9BXR6 569 aa19.92■□□□□ 0.78
TRIM28-201ENST00000253024 PHPT1Q9NRX4 125 aaPredicted RBP19.92■□□□□ 0.78
TRIM28-201ENST00000253024 SIRT4Q9Y6E7 314 aaPredicted RBP19.92■□□□□ 0.78
TRIM28-201ENST00000253024 F3P13726 295 aa19.91■□□□□ 0.78
TRIM28-201ENST00000253024 ETV6P41212 452 aa19.91■□□□□ 0.78
TRIM28-201ENST00000253024 PRMT2P55345 433 aa19.91■□□□□ 0.78
TRIM28-201ENST00000253024 TEKQ02763 1124 aa19.91■□□□□ 0.78
TRIM28-201ENST00000253024 SLC3A1Q07837 685 aa19.91■□□□□ 0.78
TRIM28-201ENST00000253024 RPA4Q13156 261 aa19.91■□□□□ 0.78
TRIM28-201ENST00000253024 ZNF800Q2TB10 664 aaPredicted RBP eCLIP19.91■□□□□ 0.785e-8■□□□□ 10.9
TRIM28-201ENST00000253024 ENPP7Q6UWV6 458 aa19.91■□□□□ 0.78
TRIM28-201ENST00000253024 GDF7Q7Z4P5 450 aa19.91■□□□□ 0.78
TRIM28-201ENST00000253024 SENP5Q96HI0 755 aaPredicted RBP19.91■□□□□ 0.78
TRIM28-201ENST00000253024 MAT2BQ9NZL9 334 aa19.91■□□□□ 0.78
TRIM28-201ENST00000253024 MRPS2Q9Y399 296 aaKnown RBP19.91■□□□□ 0.78
TRIM28-201ENST00000253024 OR6C70A6NIJ9 312 aa19.91■□□□□ 0.78
TRIM28-201ENST00000253024 B4DXG7 233 aa19.91■□□□□ 0.78
TRIM28-201ENST00000253024 PAHP00439 452 aa19.91■□□□□ 0.78
TRIM28-201ENST00000253024 ERGP11308 486 aa19.91■□□□□ 0.78
TRIM28-201ENST00000253024 ACVR1BP36896 505 aa19.91■□□□□ 0.78
TRIM28-201ENST00000253024 OR10A3P58181 314 aa19.91■□□□□ 0.78
TRIM28-201ENST00000253024 KLHL22Q53GT1 634 aa19.91■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 64.1 ms