RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 SLC22A25Q6T423 547 aa5.81□□□□□ -1.48
SCN1A-217ENST00000637988 MAMDC4Q6UXC1 1216 aa5.81□□□□□ -1.48
SCN1A-217ENST00000637988 SHISA6Q6ZSJ9 500 aa5.81□□□□□ -1.48
SCN1A-217ENST00000637988 MARCH9Q86YJ5 346 aa5.81□□□□□ -1.48
SCN1A-217ENST00000637988 MKXQ8IYA7 352 aa5.81□□□□□ -1.48
SCN1A-217ENST00000637988 ZNF619Q8N2I2 560 aa5.81□□□□□ -1.48
SCN1A-217ENST00000637988 OR2T27Q8NH04 317 aa5.81□□□□□ -1.48
SCN1A-217ENST00000637988 ZNF578Q96N58 590 aaPredicted RBP5.81□□□□□ -1.48
SCN1A-217ENST00000637988 EVA1AQ9H8M9 152 aa5.81□□□□□ -1.48
SCN1A-217ENST00000637988 MLXQ9UH92 298 aa5.81□□□□□ -1.48
SCN1A-217ENST00000637988 VDAC3Q9Y277 283 aa5.81□□□□□ -1.48
SCN1A-217ENST00000637988 ZDHHC9Q9Y397 364 aa5.81□□□□□ -1.48
SCN1A-217ENST00000637988 B4DXG7 233 aa5.81□□□□□ -1.48
SCN1A-217ENST00000637988 TLX2O43763 284 aaPredicted RBP5.81□□□□□ -1.48
SCN1A-217ENST00000637988 CREBL2O60519 120 aaPredicted RBP5.81□□□□□ -1.48
SCN1A-217ENST00000637988 TFPTP0C1Z6 253 aa5.81□□□□□ -1.48
SCN1A-217ENST00000637988 ARSAP15289 507 aa5.81□□□□□ -1.48
SCN1A-217ENST00000637988 CHRNA4P43681 627 aa5.81□□□□□ -1.48
SCN1A-217ENST00000637988 XCR1P46094 333 aa5.81□□□□□ -1.48
SCN1A-217ENST00000637988 EFNA3P52797 238 aa5.81□□□□□ -1.48
SCN1A-217ENST00000637988 JAM2P57087 298 aa5.81□□□□□ -1.48
SCN1A-217ENST00000637988 RAC1P63000 192 aa5.81□□□□□ -1.48
SCN1A-217ENST00000637988 RACK1P63244 317 aaKnown RBP5.81□□□□□ -1.48
SCN1A-217ENST00000637988 OR8H3Q8N146 312 aa5.81□□□□□ -1.48
SCN1A-217ENST00000637988 RBMXL3Q8N7X1 1067 aaKnown RBP5.81□□□□□ -1.48
SCN1A-217ENST00000637988 OR4F6Q8NGB9 312 aa5.81□□□□□ -1.48
SCN1A-217ENST00000637988 HHIPL1Q96JK4 782 aa5.81□□□□□ -1.48
SCN1A-217ENST00000637988 LRR1Q96L50 414 aa5.81□□□□□ -1.48
SCN1A-217ENST00000637988 SNX18Q96RF0 628 aa5.81□□□□□ -1.48
SCN1A-217ENST00000637988 AGXT2Q9BYV1 514 aa5.81□□□□□ -1.48
SCN1A-217ENST00000637988 PELI2Q9HAT8 420 aa5.81□□□□□ -1.48
SCN1A-217ENST00000637988 TXNRD2Q9NNW7 524 aa5.81□□□□□ -1.48
SCN1A-217ENST00000637988 ZKSCAN7Q9P0L1 754 aaPredicted RBP5.81□□□□□ -1.48
SCN1A-217ENST00000637988 OR14J1Q9UGF5 321 aa5.81□□□□□ -1.48
SCN1A-217ENST00000637988 AP1G1O43747 822 aa5.81□□□□□ -1.48
SCN1A-217ENST00000637988 NOBOXO60393 691 aa5.81□□□□□ -1.48
SCN1A-217ENST00000637988 GKP32189 559 aa5.81□□□□□ -1.48
SCN1A-217ENST00000637988 ART1P52961 327 aa5.81□□□□□ -1.48
SCN1A-217ENST00000637988 CASP7P55210 303 aa5.81□□□□□ -1.48
SCN1A-217ENST00000637988 PPA1Q15181 289 aa5.81□□□□□ -1.48
SCN1A-217ENST00000637988 MSMO1Q15800 293 aa5.81□□□□□ -1.48
SCN1A-217ENST00000637988 NOXA1Q86UR1 476 aa5.81□□□□□ -1.48
SCN1A-217ENST00000637988 SLC25A44Q96H78 314 aaPredicted RBP5.81□□□□□ -1.48
SCN1A-217ENST00000637988 IL4I1Q96RQ9 567 aa5.81□□□□□ -1.48
SCN1A-217ENST00000637988 SLC22A4Q9H015 551 aa5.81□□□□□ -1.48
SCN1A-217ENST00000637988 NXF5Q9H1B4 397 aaKnown RBP5.81□□□□□ -1.48
SCN1A-217ENST00000637988 WDR55Q9H6Y2 383 aaPredicted RBP5.81□□□□□ -1.48
SCN1A-217ENST00000637988 MTHFD2LQ9H903 347 aaPredicted RBP5.81□□□□□ -1.48
SCN1A-217ENST00000637988 TREM1Q9NP99 234 aa5.81□□□□□ -1.48
SCN1A-217ENST00000637988 C2orf78A6NCI8 922 aa5.81□□□□□ -1.48
SCN1A-217ENST00000637988 WTIPA6NIX2 430 aaPredicted RBP5.81□□□□□ -1.48
SCN1A-217ENST00000637988 STC2O76061 302 aa5.81□□□□□ -1.48
SCN1A-217ENST00000637988 SERPINE2P07093 398 aa5.81□□□□□ -1.48
SCN1A-217ENST00000637988 CKMT1AP12532 417 aa5.81□□□□□ -1.48
SCN1A-217ENST00000637988 CYBAP13498 195 aa5.81□□□□□ -1.48
SCN1A-217ENST00000637988 IL1RNP18510 177 aa5.81□□□□□ -1.48
SCN1A-217ENST00000637988 IL4RP24394 825 aa5.81□□□□□ -1.48
SCN1A-217ENST00000637988 ADH6P28332 368 aa5.81□□□□□ -1.48
SCN1A-217ENST00000637988 RAB11AP62491 216 aa5.81□□□□□ -1.48
SCN1A-217ENST00000637988 SLC27A4Q6P1M0 643 aa5.81□□□□□ -1.48
SCN1A-217ENST00000637988 KLBQ86Z14 1044 aa5.81□□□□□ -1.48
SCN1A-217ENST00000637988 FAM160A2Q8N612 972 aaPredicted RBP5.81□□□□□ -1.48
SCN1A-217ENST00000637988 CCDC32Q9BV29 185 aa5.81□□□□□ -1.48
SCN1A-217ENST00000637988 TMEM185BQ9H7F4 350 aa5.81□□□□□ -1.48
SCN1A-217ENST00000637988 B3GALT1Q9Y5Z6 326 aa5.81□□□□□ -1.48
SCN1A-217ENST00000637988 TRBV2A0A0J9YWF9 115 aa5.81□□□□□ -1.48
SCN1A-217ENST00000637988 FAM155BO75949 473 aa5.81□□□□□ -1.48
SCN1A-217ENST00000637988 F11P03951 625 aa5.81□□□□□ -1.48
SCN1A-217ENST00000637988 ADH4P08319 380 aa5.81□□□□□ -1.48
SCN1A-217ENST00000637988 CHRM1P11229 460 aaPredicted RBP5.81□□□□□ -1.48
SCN1A-217ENST00000637988 SLC9A3P48764 834 aa5.81□□□□□ -1.48
SCN1A-217ENST00000637988 AKR1D1P51857 326 aa5.81□□□□□ -1.48
SCN1A-217ENST00000637988 CARD18P57730 90 aa5.81□□□□□ -1.48
SCN1A-217ENST00000637988 TAS2R38P59533 333 aa5.81□□□□□ -1.48
SCN1A-217ENST00000637988 CYBRD1Q53TN4 286 aa5.81□□□□□ -1.48
SCN1A-217ENST00000637988 ADGRD1Q6QNK2 874 aa5.81□□□□□ -1.48
SCN1A-217ENST00000637988 OR8H1Q8NGG4 311 aa5.81□□□□□ -1.48
SCN1A-217ENST00000637988 CD300LFQ8TDQ1 290 aa5.81□□□□□ -1.48
SCN1A-217ENST00000637988 ALG3Q92685 438 aa5.81□□□□□ -1.48
SCN1A-217ENST00000637988 TRIM43Q96BQ3 446 aaPredicted RBP5.81□□□□□ -1.48
SCN1A-217ENST00000637988 MSLNLQ96KJ4 702 aa5.81□□□□□ -1.48
SCN1A-217ENST00000637988 C7orf26Q96N11 449 aa5.81□□□□□ -1.48
SCN1A-217ENST00000637988 EDEM2Q9BV94 578 aa5.81□□□□□ -1.48
SCN1A-217ENST00000637988 HRASLSQ9HDD0 168 aa5.81□□□□□ -1.48
SCN1A-217ENST00000637988 GCM1Q9NP62 436 aa5.81□□□□□ -1.48
SCN1A-217ENST00000637988 RNF11Q9Y3C5 154 aa5.81□□□□□ -1.48
SCN1A-217ENST00000637988 LAMB4A4D0S4 1761 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 LRRN3E7EW58 273 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 K7EQM0 130 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 ABCD4O14678 606 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 CRTAPO75718 401 aaPredicted RBP5.8□□□□□ -1.48
SCN1A-217ENST00000637988 SHBGP04278 402 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 RPL5P46777 297 aaKnown RBP5.8□□□□□ -1.48
SCN1A-217ENST00000637988 DEFB109BQ30KR1 87 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 C6orf183Q5T699 404 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 LEG1Q6P5S2 330 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 XKRXQ6PP77 449 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 XKR5Q6UX68 686 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 IL20RBQ6UXL0 311 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 MCATQ8IVS2 390 aaKnown RBP5.8□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms