RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 TBXA2RP21731 343 aa17.22■□□□□ 0.35
UPF1-210ENST00000600689 NUDT1P36639 197 aa17.22■□□□□ 0.35
UPF1-210ENST00000600689 SNTA1Q13424 505 aa17.22■□□□□ 0.35
UPF1-210ENST00000600689 BICRALQ6AI39 1079 aa17.22■□□□□ 0.35
UPF1-210ENST00000600689 NXPE4Q6UWF7 544 aa17.22■□□□□ 0.35
UPF1-210ENST00000600689 GALNT6Q8NCL4 622 aa17.22■□□□□ 0.35
UPF1-210ENST00000600689 DOK4Q8TEW6 326 aa17.22■□□□□ 0.35
UPF1-210ENST00000600689 REM1O75628 298 aa17.22■□□□□ 0.35
UPF1-210ENST00000600689 POP4O95707 220 aaKnown RBP17.22■□□□□ 0.35
UPF1-210ENST00000600689 RAF1P04049 648 aa17.22■□□□□ 0.35
UPF1-210ENST00000600689 POLR2CP19387 275 aaPredicted RBP17.22■□□□□ 0.35
UPF1-210ENST00000600689 ACVR1BP36896 505 aa17.22■□□□□ 0.35
UPF1-210ENST00000600689 ELOAQ14241 798 aaKnown RBP17.22■□□□□ 0.35
UPF1-210ENST00000600689 ZMYND11Q15326 602 aa17.22■□□□□ 0.35
UPF1-210ENST00000600689 PRSS45Q7RTY3 260 aa17.22■□□□□ 0.35
UPF1-210ENST00000600689 KANSL1Q7Z3B3 1105 aa17.22■□□□□ 0.35
UPF1-210ENST00000600689 TMEM25Q86YD3 366 aa17.22■□□□□ 0.35
UPF1-210ENST00000600689 CREB3L1Q96BA8 519 aa17.22■□□□□ 0.35
UPF1-210ENST00000600689 NEURL3Q96EH8 262 aa17.22■□□□□ 0.35
UPF1-210ENST00000600689 TCEAL4Q96EI5 215 aa17.22■□□□□ 0.35
UPF1-210ENST00000600689 ZC3HAV1LQ96H79 300 aaKnown RBP17.22■□□□□ 0.35
UPF1-210ENST00000600689 KCNJ15Q99712 375 aa17.22■□□□□ 0.35
UPF1-210ENST00000600689 MED18Q9BUE0 208 aa17.22■□□□□ 0.35
UPF1-210ENST00000600689 OR51J1Q9H342 316 aa17.22■□□□□ 0.35
UPF1-210ENST00000600689 CUEDC1Q9NWM3 386 aaPredicted RBP17.22■□□□□ 0.35
UPF1-210ENST00000600689 RDH8Q9NYR8 311 aa17.22■□□□□ 0.35
UPF1-210ENST00000600689 H2AFY2Q9P0M6 372 aaPredicted RBP17.22■□□□□ 0.35
UPF1-210ENST00000600689 TAC3Q9UHF0 121 aa17.22■□□□□ 0.35
UPF1-210ENST00000600689 ASF1AQ9Y294 204 aa17.22■□□□□ 0.35
UPF1-210ENST00000600689 CACNG2Q9Y698 323 aa17.22■□□□□ 0.35
UPF1-210ENST00000600689 AP1M2Q9Y6Q5 423 aa17.22■□□□□ 0.35
UPF1-210ENST00000600689 CHD9Q3L8U1 2897 aa17.22■□□□□ 0.35
UPF1-210ENST00000600689 SNTNA6NMZ2 147 aa17.21■□□□□ 0.35
UPF1-210ENST00000600689 K7ESM1 405 aa17.21■□□□□ 0.35
UPF1-210ENST00000600689 SHOXO15266 292 aa17.21■□□□□ 0.35
UPF1-210ENST00000600689 MMP20O60882 483 aa17.21■□□□□ 0.35
UPF1-210ENST00000600689 CLTBP09497 229 aa17.21■□□□□ 0.35
UPF1-210ENST00000600689 ACADMP11310 421 aa17.21■□□□□ 0.35
UPF1-210ENST00000600689 ANXA3P12429 323 aa17.21■□□□□ 0.35
UPF1-210ENST00000600689 RPS7P62081 194 aaKnown RBP17.21■□□□□ 0.35
UPF1-210ENST00000600689 FCRLBQ6BAA4 426 aa17.21■□□□□ 0.35
UPF1-210ENST00000600689 TMEM65Q6PI78 240 aa17.21■□□□□ 0.35
UPF1-210ENST00000600689 FAM92BQ6ZTR7 304 aa17.21■□□□□ 0.35
UPF1-210ENST00000600689 FIBINQ8TAL6 211 aa17.21■□□□□ 0.35
UPF1-210ENST00000600689 HSD17B8Q92506 261 aa17.21■□□□□ 0.35
UPF1-210ENST00000600689 TRIM43Q96BQ3 446 aaPredicted RBP17.21■□□□□ 0.35
UPF1-210ENST00000600689 C16orf58Q96GQ5 468 aa17.21■□□□□ 0.35
UPF1-210ENST00000600689 EFCAB11Q9BUY7 163 aa17.21■□□□□ 0.35
UPF1-210ENST00000600689 PIGUQ9H490 435 aa17.21■□□□□ 0.35
UPF1-210ENST00000600689 ADAM30Q9UKF2 790 aa17.21■□□□□ 0.35
UPF1-210ENST00000600689 KCNE3Q9Y6H6 103 aa17.21■□□□□ 0.35
UPF1-210ENST00000600689 DENND4CQ5VZ89 1909 aa17.21■□□□□ 0.35
UPF1-210ENST00000600689 ABHD14A-ACY1A0A1B0GW23 586 aa17.21■□□□□ 0.35
UPF1-210ENST00000600689 A0A1W2PS29 197 aa17.21■□□□□ 0.35
UPF1-210ENST00000600689 TMEM129A0AVI4 362 aa17.21■□□□□ 0.35
UPF1-210ENST00000600689 FCER2P06734 321 aa17.21■□□□□ 0.35
UPF1-210ENST00000600689 DNASE1P24855 282 aa17.21■□□□□ 0.35
UPF1-210ENST00000600689 SLC6A1P30531 599 aa17.21■□□□□ 0.35
UPF1-210ENST00000600689 CDK5Q00535 292 aa17.21■□□□□ 0.35
UPF1-210ENST00000600689 ZNF155Q12901 538 aaPredicted RBP17.21■□□□□ 0.35
UPF1-210ENST00000600689 BTN1A1Q13410 526 aa17.21■□□□□ 0.35
UPF1-210ENST00000600689 RPTNQ6XPR3 784 aa17.21■□□□□ 0.35
UPF1-210ENST00000600689 KLHL36Q8N4N3 616 aa17.21■□□□□ 0.35
UPF1-210ENST00000600689 OR13C5Q8NGS8 318 aa17.21■□□□□ 0.35
UPF1-210ENST00000600689 SLC35G5Q96KT7 338 aa17.21■□□□□ 0.35
UPF1-210ENST00000600689 SOSTQ9BQB4 213 aa17.21■□□□□ 0.35
UPF1-210ENST00000600689 C1QTNF7Q9BXJ2 289 aa17.21■□□□□ 0.35
UPF1-210ENST00000600689 ZBP1Q9H171 429 aa17.21■□□□□ 0.35
UPF1-210ENST00000600689 NLGN3Q9NZ94 848 aa17.21■□□□□ 0.35
UPF1-210ENST00000600689 NDOR1Q9UHB4 597 aa17.21■□□□□ 0.35
UPF1-210ENST00000600689 ELF5Q9UKW6 265 aaPredicted RBP17.21■□□□□ 0.35
UPF1-210ENST00000600689 GPR55Q9Y2T6 319 aaPredicted RBP17.21■□□□□ 0.35
UPF1-210ENST00000600689 CHST2Q9Y4C5 530 aa17.21■□□□□ 0.35
UPF1-210ENST00000600689 REV3LO60673 3130 aa17.2■□□□□ 0.34
UPF1-210ENST00000600689 H7BY64 318 aa17.2■□□□□ 0.34
UPF1-210ENST00000600689 QSOX1O00391 747 aa17.2■□□□□ 0.34
UPF1-210ENST00000600689 PIP5K1CO60331 668 aa17.2■□□□□ 0.34
UPF1-210ENST00000600689 TRIM3O75382 744 aaPredicted RBP17.2■□□□□ 0.34
UPF1-210ENST00000600689 MPC2O95563 127 aa17.2■□□□□ 0.34
UPF1-210ENST00000600689 PCSK2P16519 638 aa17.2■□□□□ 0.34
UPF1-210ENST00000600689 SFRP4Q6FHJ7 346 aaPredicted RBP17.2■□□□□ 0.34
UPF1-210ENST00000600689 SLC9B2Q86UD5 537 aa17.2■□□□□ 0.34
UPF1-210ENST00000600689 CPOQ8IVL8 374 aa17.2■□□□□ 0.34
UPF1-210ENST00000600689 TTC9Q92623 222 aa17.2■□□□□ 0.34
UPF1-210ENST00000600689 PRAP1Q96NZ9 151 aa17.2■□□□□ 0.34
UPF1-210ENST00000600689 FOLH1BQ9HBA9 442 aa17.2■□□□□ 0.34
UPF1-210ENST00000600689 SLCO1C1Q9NYB5 712 aa17.2■□□□□ 0.34
UPF1-210ENST00000600689 CXXC1Q9P0U4 656 aaPredicted RBP17.2■□□□□ 0.34
UPF1-210ENST00000600689 SLC13A4Q9UKG4 626 aa17.2■□□□□ 0.34
UPF1-210ENST00000600689 EXOSC1Q9Y3B2 195 aaKnown RBP17.2■□□□□ 0.34
UPF1-210ENST00000600689 UBXN7O94888 489 aa17.2■□□□□ 0.34
UPF1-210ENST00000600689 RPL3P39023 403 aaKnown RBP17.2■□□□□ 0.34
UPF1-210ENST00000600689 METAP1P53582 386 aa17.2■□□□□ 0.34
UPF1-210ENST00000600689 SMIM11AP58511 58 aa17.2■□□□□ 0.34
UPF1-210ENST00000600689 SLC7A9P82251 487 aa17.2■□□□□ 0.34
UPF1-210ENST00000600689 SLC25A35Q3KQZ1 300 aa17.2■□□□□ 0.34
UPF1-210ENST00000600689 LGALSLQ3ZCW2 172 aaPredicted RBP17.2■□□□□ 0.34
UPF1-210ENST00000600689 FAAH2Q6GMR7 532 aa17.2■□□□□ 0.34
UPF1-210ENST00000600689 VRK2Q86Y07 508 aa17.2■□□□□ 0.34
UPF1-210ENST00000600689 SIRT6Q8N6T7 355 aa17.2■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms