RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 OR7G2Q8NG99 324 aa11.72□□□□□ -0.53
UPF1-208ENST00000600012 OR52N2Q8NGI0 321 aa11.72□□□□□ -0.53
UPF1-208ENST00000600012 SFXN5Q8TD22 340 aa11.72□□□□□ -0.53
UPF1-208ENST00000600012 ELP4Q96EB1 424 aa11.72□□□□□ -0.53
UPF1-208ENST00000600012 NEURL3Q96EH8 262 aa11.72□□□□□ -0.53
UPF1-208ENST00000600012 SLC35G5Q96KT7 338 aa11.72□□□□□ -0.53
UPF1-208ENST00000600012 ZNF354BQ96LW1 612 aa11.72□□□□□ -0.53
UPF1-208ENST00000600012 PTCHD1Q96NR3 888 aa11.72□□□□□ -0.53
UPF1-208ENST00000600012 DGAT2Q96PD7 388 aa11.72□□□□□ -0.53
UPF1-208ENST00000600012 ALOXE3Q9BYJ1 711 aa11.72□□□□□ -0.53
UPF1-208ENST00000600012 SERHL2Q9H4I8 314 aa11.72□□□□□ -0.53
UPF1-208ENST00000600012 GPATCH2Q9NW75 528 aa11.72□□□□□ -0.53
UPF1-208ENST00000600012 MAT2BQ9NZL9 334 aa11.72□□□□□ -0.53
UPF1-208ENST00000600012 SH3BGRL2Q9UJC5 107 aa11.72□□□□□ -0.53
UPF1-208ENST00000600012 C2CD3Q4AC94 2353 aa11.72□□□□□ -0.53
UPF1-208ENST00000600012 POLQO75417 2590 aa11.71□□□□□ -0.53
UPF1-208ENST00000600012 ARPC2O15144 300 aa11.71□□□□□ -0.53
UPF1-208ENST00000600012 EMC8O43402 210 aa11.71□□□□□ -0.53
UPF1-208ENST00000600012 SLC19A2O60779 497 aa11.71□□□□□ -0.53
UPF1-208ENST00000600012 NME6O75414 186 aaPredicted RBP11.71□□□□□ -0.53
UPF1-208ENST00000600012 SLC35E2P0CK97 266 aa11.71□□□□□ -0.53
UPF1-208ENST00000600012 COX6B1P14854 86 aa11.71□□□□□ -0.53
UPF1-208ENST00000600012 NCK1P16333 377 aa11.71□□□□□ -0.53
UPF1-208ENST00000600012 GPX2P18283 190 aa11.71□□□□□ -0.53
UPF1-208ENST00000600012 POU3F2P20265 443 aaPredicted RBP11.71□□□□□ -0.53
UPF1-208ENST00000600012 AGAP20933 346 aa11.71□□□□□ -0.53
UPF1-208ENST00000600012 ATP6V1B2P21281 511 aa11.71□□□□□ -0.53
UPF1-208ENST00000600012 IL10P22301 178 aa11.71□□□□□ -0.53
UPF1-208ENST00000600012 CRATP43155 626 aa11.71□□□□□ -0.53
UPF1-208ENST00000600012 STT3AP46977 705 aa11.71□□□□□ -0.53
UPF1-208ENST00000600012 PMP22Q01453 160 aa11.71□□□□□ -0.53
UPF1-208ENST00000600012 TRIM25Q14258 630 aaKnown RBP11.71□□□□□ -0.53
UPF1-208ENST00000600012 RGNQ15493 299 aa11.71□□□□□ -0.53
UPF1-208ENST00000600012 PRICKLE4Q2TBC4 344 aa11.71□□□□□ -0.53
UPF1-208ENST00000600012 TRMT12Q53H54 448 aaKnown RBP11.71□□□□□ -0.53
UPF1-208ENST00000600012 ACER2Q5QJU3 275 aa11.71□□□□□ -0.53
UPF1-208ENST00000600012 C6orf163Q5TEZ5 329 aa11.71□□□□□ -0.53
UPF1-208ENST00000600012 H3F3CQ6NXT2 135 aa11.71□□□□□ -0.53
UPF1-208ENST00000600012 TNFAIP8L2Q6P589 184 aaPredicted RBP11.71□□□□□ -0.53
UPF1-208ENST00000600012 LANCL3Q6ZV70 420 aa11.71□□□□□ -0.53
UPF1-208ENST00000600012 C6orf120Q7Z4R8 191 aa11.71□□□□□ -0.53
UPF1-208ENST00000600012 ZZZ3Q8IYH5 903 aa11.71□□□□□ -0.53
UPF1-208ENST00000600012 MICU2Q8IYU8 434 aa11.71□□□□□ -0.53
UPF1-208ENST00000600012 ST13P4Q8IZP2 240 aaPredicted RBP11.71□□□□□ -0.53
UPF1-208ENST00000600012 HORMAD2Q8N7B1 307 aa11.71□□□□□ -0.53
UPF1-208ENST00000600012 SIMC1Q8NDZ2 872 aa11.71□□□□□ -0.53
UPF1-208ENST00000600012 HIPK4Q8NE63 616 aa11.71□□□□□ -0.53
UPF1-208ENST00000600012 NUP43Q8NFH3 380 aa11.71□□□□□ -0.53
UPF1-208ENST00000600012 OR2T12Q8NG77 320 aa11.71□□□□□ -0.53
UPF1-208ENST00000600012 OR56A1Q8NGH5 318 aa11.71□□□□□ -0.53
UPF1-208ENST00000600012 FBXO30Q8TB52 745 aa11.71□□□□□ -0.53
UPF1-208ENST00000600012 ASB9Q96DX5 294 aa11.71□□□□□ -0.53
UPF1-208ENST00000600012 OTUB1Q96FW1 271 aaPredicted RBP11.71□□□□□ -0.53
UPF1-208ENST00000600012 C3orf14Q9HBI5 128 aa11.71□□□□□ -0.53
UPF1-208ENST00000600012 EQTNQ9NQ60 294 aa11.71□□□□□ -0.53
UPF1-208ENST00000600012 DDX18Q9NVP1 670 aaKnown RBP11.71□□□□□ -0.53
UPF1-208ENST00000600012 CORO2BQ9UQ03 480 aa11.71□□□□□ -0.53
UPF1-208ENST00000600012 AP3M1Q9Y2T2 418 aa11.71□□□□□ -0.53
UPF1-208ENST00000600012 GMEB1Q9Y692 573 aa11.71□□□□□ -0.53
UPF1-208ENST00000600012 OTOGQ6ZRI0 2925 aa11.7□□□□□ -0.54
UPF1-208ENST00000600012 IGKV3D-11A0A0A0MRZ8 115 aa11.7□□□□□ -0.54
UPF1-208ENST00000600012 IGHV3-20A0A0C4DH32 117 aa11.7□□□□□ -0.54
UPF1-208ENST00000600012 ELOVL7A1L3X0 281 aa11.7□□□□□ -0.54
UPF1-208ENST00000600012 A8MUA0 341 aa11.7□□□□□ -0.54
UPF1-208ENST00000600012 UPK1AO00322 258 aa11.7□□□□□ -0.54
UPF1-208ENST00000600012 ACOT8O14734 319 aa11.7□□□□□ -0.54
UPF1-208ENST00000600012 IFNA16P05015 189 aa11.7□□□□□ -0.54
UPF1-208ENST00000600012 SMSP52788 366 aa11.7□□□□□ -0.54
UPF1-208ENST00000600012 PRR5P85299 388 aa11.7□□□□□ -0.54
UPF1-208ENST00000600012 MGAT2Q10469 447 aa11.7□□□□□ -0.54
UPF1-208ENST00000600012 BNIP2Q12982 314 aa11.7□□□□□ -0.54
UPF1-208ENST00000600012 CCNIQ14094 377 aa11.7□□□□□ -0.54
UPF1-208ENST00000600012 SERTAD2Q14140 314 aa11.7□□□□□ -0.54
UPF1-208ENST00000600012 FLOT2Q14254 428 aa11.7□□□□□ -0.54
UPF1-208ENST00000600012 LASP1Q14847 261 aaKnown RBP11.7□□□□□ -0.54
UPF1-208ENST00000600012 EXOSC7Q15024 291 aaKnown RBP11.7□□□□□ -0.54
UPF1-208ENST00000600012 EXT1Q16394 746 aa11.7□□□□□ -0.54
UPF1-208ENST00000600012 SPATS1Q496A3 300 aa11.7□□□□□ -0.54
UPF1-208ENST00000600012 GCNT6Q5T4J0 391 aa11.7□□□□□ -0.54
UPF1-208ENST00000600012 CYP2R1Q6VVX0 501 aa11.7□□□□□ -0.54
UPF1-208ENST00000600012 SERPINA11Q86U17 422 aa11.7□□□□□ -0.54
UPF1-208ENST00000600012 PTOV1Q86YD1 416 aa11.7□□□□□ -0.54
UPF1-208ENST00000600012 GALNT12Q8IXK2 581 aa11.7□□□□□ -0.54
UPF1-208ENST00000600012 BEST3Q8N1M1 668 aa11.7□□□□□ -0.54
UPF1-208ENST00000600012 ZNF675Q8TD23 568 aa11.7□□□□□ -0.54
UPF1-208ENST00000600012 THAP3Q8WTV1 239 aaPredicted RBP11.7□□□□□ -0.54
UPF1-208ENST00000600012 MOAP1Q96BY2 351 aa11.7□□□□□ -0.54
UPF1-208ENST00000600012 C16orf58Q96GQ5 468 aa11.7□□□□□ -0.54
UPF1-208ENST00000600012 REXO5Q96IC2 774 aaKnown RBP11.7□□□□□ -0.54
UPF1-208ENST00000600012 LURAP1Q96LR2 239 aa11.7□□□□□ -0.54
UPF1-208ENST00000600012 YIPF4Q9BSR8 244 aa11.7□□□□□ -0.54
UPF1-208ENST00000600012 OR51I1Q9H343 314 aa11.7□□□□□ -0.54
UPF1-208ENST00000600012 RAD21L1Q9H4I0 556 aa11.7□□□□□ -0.54
UPF1-208ENST00000600012 ADAP2Q9NPF8 381 aa11.7□□□□□ -0.54
UPF1-208ENST00000600012 PNO1Q9NRX1 252 aaKnown RBP11.7□□□□□ -0.54
UPF1-208ENST00000600012 SNX13Q9Y5W8 968 aa11.7□□□□□ -0.54
UPF1-208ENST00000600012 CCDC168Q8NDH2 2452 aa11.7□□□□□ -0.54
UPF1-208ENST00000600012 GIMAP1-GIMAP5A0A087WTJ2 511 aa11.69□□□□□ -0.54
UPF1-208ENST00000600012 TCRBV16S1A1N1A0A5B0 115 aa11.69□□□□□ -0.54
UPF1-208ENST00000600012 HRKO00198 91 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms