RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 ACTRT3Q9BYD9 372 aa13□□□□□ -0.33
SHKBP1-217ENST00000598558 PIGUQ9H490 435 aa13□□□□□ -0.33
SHKBP1-217ENST00000598558 ZFP64Q9NPA5 681 aa13□□□□□ -0.33
SHKBP1-217ENST00000598558 RYDENQ9NUL5 291 aaKnown RBP13□□□□□ -0.33
SHKBP1-217ENST00000598558 VPS4AQ9UN37 437 aa13□□□□□ -0.33
SHKBP1-217ENST00000598558 LIPGQ9Y5X9 500 aa13□□□□□ -0.33
SHKBP1-217ENST00000598558 RELNP78509 3460 aa13□□□□□ -0.33
SHKBP1-217ENST00000598558 PRAMEF25A6NGN4 478 aa12.99□□□□□ -0.33
SHKBP1-217ENST00000598558 TTC36A6NLP5 189 aa12.99□□□□□ -0.33
SHKBP1-217ENST00000598558 GNB5O14775 395 aa12.99□□□□□ -0.33
SHKBP1-217ENST00000598558 HOXB9P17482 250 aaPredicted RBP12.99□□□□□ -0.33
SHKBP1-217ENST00000598558 MATN1P21941 496 aa12.99□□□□□ -0.33
SHKBP1-217ENST00000598558 IL12BP29460 328 aa12.99□□□□□ -0.33
SHKBP1-217ENST00000598558 ATP4BP51164 291 aa12.99□□□□□ -0.33
SHKBP1-217ENST00000598558 KCNJ2P63252 427 aa12.99□□□□□ -0.33
SHKBP1-217ENST00000598558 PLGLB1Q02325 96 aa12.99□□□□□ -0.33
SHKBP1-217ENST00000598558 DECR1Q16698 335 aa12.99□□□□□ -0.33
SHKBP1-217ENST00000598558 VPS26BQ4G0F5 336 aa12.99□□□□□ -0.33
SHKBP1-217ENST00000598558 AGKQ53H12 422 aa12.99□□□□□ -0.33
SHKBP1-217ENST00000598558 PAGE3Q5JUK9 113 aa12.99□□□□□ -0.33
SHKBP1-217ENST00000598558 SLC2A7Q6PXP3 512 aa12.99□□□□□ -0.33
SHKBP1-217ENST00000598558 GK5Q6ZS86 529 aa12.99□□□□□ -0.33
SHKBP1-217ENST00000598558 ZNF621Q6ZSS3 439 aa12.99□□□□□ -0.33
SHKBP1-217ENST00000598558 WDSUB1Q8N9V3 476 aa12.99□□□□□ -0.33
SHKBP1-217ENST00000598558 VPS37AQ8NEZ2 397 aa12.99□□□□□ -0.33
SHKBP1-217ENST00000598558 JADE3Q92613 823 aa12.99□□□□□ -0.33
SHKBP1-217ENST00000598558 NEURL3Q96EH8 262 aa12.99□□□□□ -0.33
SHKBP1-217ENST00000598558 JSRP1Q96MG2 331 aaPredicted RBP12.99□□□□□ -0.33
SHKBP1-217ENST00000598558 PANX1Q96RD7 426 aa12.99□□□□□ -0.33
SHKBP1-217ENST00000598558 PAIP1Q9H074 479 aaKnown RBP12.99□□□□□ -0.33
SHKBP1-217ENST00000598558 METTL7AQ9H8H3 244 aa12.99□□□□□ -0.33
SHKBP1-217ENST00000598558 ZDHHC11Q9H8X9 412 aa12.99□□□□□ -0.33
SHKBP1-217ENST00000598558 DUSP22Q9NRW4 184 aa12.99□□□□□ -0.33
SHKBP1-217ENST00000598558 CCDC167Q9P0B6 97 aa12.99□□□□□ -0.33
SHKBP1-217ENST00000598558 SLAMF8Q9P0V8 285 aa12.99□□□□□ -0.33
SHKBP1-217ENST00000598558 SEC14L3Q9UDX4 400 aa12.99□□□□□ -0.33
SHKBP1-217ENST00000598558 PCDHGB4Q9UN71 923 aa12.99□□□□□ -0.33
SHKBP1-217ENST00000598558 TFECO14948 347 aaPredicted RBP12.98□□□□□ -0.33
SHKBP1-217ENST00000598558 ABCB7O75027 752 aa12.98□□□□□ -0.33
SHKBP1-217ENST00000598558 UTS2O95399 124 aa12.98□□□□□ -0.33
SHKBP1-217ENST00000598558 ZIC2O95409 532 aaPredicted RBP12.98□□□□□ -0.33
SHKBP1-217ENST00000598558 OR12D1P0DN82 309 aa12.98□□□□□ -0.33
SHKBP1-217ENST00000598558 ARFIP2P53365 341 aa12.98□□□□□ -0.33
SHKBP1-217ENST00000598558 MVDP53602 400 aa12.98□□□□□ -0.33
SHKBP1-217ENST00000598558 EFR3AQ14156 821 aa12.98□□□□□ -0.33
SHKBP1-217ENST00000598558 RCAN2Q14206 197 aa12.98□□□□□ -0.33
SHKBP1-217ENST00000598558 SQLEQ14534 574 aa12.98□□□□□ -0.33
SHKBP1-217ENST00000598558 GRAMD1BQ3KR37 738 aa12.98□□□□□ -0.33
SHKBP1-217ENST00000598558 COX20Q5RI15 118 aa12.98□□□□□ -0.33
SHKBP1-217ENST00000598558 TIGD3Q6B0B8 471 aa12.98□□□□□ -0.33
SHKBP1-217ENST00000598558 OR5M10Q6IEU7 315 aa12.98□□□□□ -0.33
SHKBP1-217ENST00000598558 GFRALQ6UXV0 394 aa12.98□□□□□ -0.33
SHKBP1-217ENST00000598558 DNAJC14Q6Y2X3 702 aaPredicted RBP12.98□□□□□ -0.33
SHKBP1-217ENST00000598558 MARCH3Q86UD3 253 aa12.98□□□□□ -0.33
SHKBP1-217ENST00000598558 ATCAYQ86WG3 371 aa12.98□□□□□ -0.33
SHKBP1-217ENST00000598558 MSRB3Q8IXL7 192 aa12.98□□□□□ -0.33
SHKBP1-217ENST00000598558 COX18Q8N8Q8 333 aa12.98□□□□□ -0.33
SHKBP1-217ENST00000598558 MIPOL1Q8TD10 442 aa12.98□□□□□ -0.33
SHKBP1-217ENST00000598558 ADAMTS15Q8TE58 950 aa12.98□□□□□ -0.33
SHKBP1-217ENST00000598558 C10orf82Q8WW14 230 aa12.98□□□□□ -0.33
SHKBP1-217ENST00000598558 RAB8BQ92930 207 aa12.98□□□□□ -0.33
SHKBP1-217ENST00000598558 MOAP1Q96BY2 351 aa12.98□□□□□ -0.33
SHKBP1-217ENST00000598558 TMCO6Q96DC7 493 aa12.98□□□□□ -0.33
SHKBP1-217ENST00000598558 AURKBQ96GD4 344 aaPredicted RBP12.98□□□□□ -0.33
SHKBP1-217ENST00000598558 SLC35G5Q96KT7 338 aa12.98□□□□□ -0.33
SHKBP1-217ENST00000598558 PHF12Q96QT6 1004 aa12.98□□□□□ -0.33
SHKBP1-217ENST00000598558 STACQ99469 402 aa12.98□□□□□ -0.33
SHKBP1-217ENST00000598558 KLHDC3Q9BQ90 382 aa12.98□□□□□ -0.33
SHKBP1-217ENST00000598558 SIKE1Q9BRV8 207 aa12.98□□□□□ -0.33
SHKBP1-217ENST00000598558 SLC35A5Q9BS91 424 aa12.98□□□□□ -0.33
SHKBP1-217ENST00000598558 BTBD2Q9BX70 525 aa12.98□□□□□ -0.33
SHKBP1-217ENST00000598558 OSBPL11Q9BXB4 747 aa12.98□□□□□ -0.33
SHKBP1-217ENST00000598558 OR51I1Q9H343 314 aa12.98□□□□□ -0.33
SHKBP1-217ENST00000598558 UBQLN3Q9H347 655 aa12.98□□□□□ -0.33
SHKBP1-217ENST00000598558 ZNF703Q9H7S9 590 aaPredicted RBP12.98□□□□□ -0.33
SHKBP1-217ENST00000598558 PLSCR2Q9NRY7 297 aa12.98□□□□□ -0.33
SHKBP1-217ENST00000598558 GIN1Q9NXP7 522 aa12.98□□□□□ -0.33
SHKBP1-217ENST00000598558 FAM53CQ9NYF3 392 aa12.98□□□□□ -0.33
SHKBP1-217ENST00000598558 FAF1Q9UNN5 650 aaPredicted RBP12.98□□□□□ -0.33
SHKBP1-217ENST00000598558 PRRC2CQ9Y520 2896 aaKnown RBP12.97□□□□□ -0.33
SHKBP1-217ENST00000598558 NBASA2RRP1 2371 aa12.97□□□□□ -0.33
SHKBP1-217ENST00000598558 NPIPA5A0A0B4J1W7 369 aa12.97□□□□□ -0.33
SHKBP1-217ENST00000598558 A0A1B0GTH9 108 aa12.97□□□□□ -0.33
SHKBP1-217ENST00000598558 NPIPA7E9PJI5 369 aa12.97□□□□□ -0.33
SHKBP1-217ENST00000598558 NR5A2O00482 541 aa12.97□□□□□ -0.33
SHKBP1-217ENST00000598558 RFXANKO14593 260 aa12.97□□□□□ -0.33
SHKBP1-217ENST00000598558 SNPHO15079 494 aa12.97□□□□□ -0.33
SHKBP1-217ENST00000598558 SEMA7AO75326 666 aa12.97□□□□□ -0.33
SHKBP1-217ENST00000598558 SNX4O95219 450 aa12.97□□□□□ -0.33
SHKBP1-217ENST00000598558 KCNH1O95259 989 aa12.97□□□□□ -0.33
SHKBP1-217ENST00000598558 NPIPA8P0DM63 369 aa12.97□□□□□ -0.33
SHKBP1-217ENST00000598558 TROVE2P10155 538 aaKnown RBP eCLIP12.97□□□□□ -0.33
SHKBP1-217ENST00000598558 KRT20P35900 424 aa12.97□□□□□ -0.33
SHKBP1-217ENST00000598558 RNF144AP50876 292 aaPredicted RBP12.97□□□□□ -0.33
SHKBP1-217ENST00000598558 STX1BP61266 288 aa12.97□□□□□ -0.33
SHKBP1-217ENST00000598558 POU6F2P78424 691 aaPredicted RBP12.97□□□□□ -0.33
SHKBP1-217ENST00000598558 FUT5Q11128 374 aa12.97□□□□□ -0.33
SHKBP1-217ENST00000598558 SNTA1Q13424 505 aa12.97□□□□□ -0.33
SHKBP1-217ENST00000598558 CPEB4Q17RY0 729 aaKnown RBP eCLIP12.97□□□□□ -0.33
SHKBP1-217ENST00000598558 TBCELQ5QJ74 424 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms