RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 PRR5P85299 388 aa8.73□□□□□ -1.01
TRIM28-208ENST00000597172 MS4A2Q01362 244 aa8.73□□□□□ -1.01
TRIM28-208ENST00000597172 LASP1Q14847 261 aaKnown RBP8.73□□□□□ -1.01
TRIM28-208ENST00000597172 MAPK11Q15759 364 aa8.73□□□□□ -1.01
TRIM28-208ENST00000597172 MFSD12Q6NUT3 480 aa8.73□□□□□ -1.01
TRIM28-208ENST00000597172 BHLHB9Q6PI77 547 aa8.73□□□□□ -1.01
TRIM28-208ENST00000597172 PAPD4Q6PIY7 484 aaKnown RBP8.73□□□□□ -1.01
TRIM28-208ENST00000597172 CXXC5Q7LFL8 322 aaKnown RBP8.73□□□□□ -1.01
TRIM28-208ENST00000597172 NET1Q7Z628 596 aaPredicted RBP8.73□□□□□ -1.01
TRIM28-208ENST00000597172 ARPINQ7Z6K5 226 aa8.73□□□□□ -1.01
TRIM28-208ENST00000597172 PTOV1Q86YD1 416 aa8.73□□□□□ -1.01
TRIM28-208ENST00000597172 HPS6Q86YV9 775 aa8.73□□□□□ -1.01
TRIM28-208ENST00000597172 FBXW8Q8N3Y1 598 aa8.73□□□□□ -1.01
TRIM28-208ENST00000597172 SLC16A11Q8NCK7 471 aa8.73□□□□□ -1.01
TRIM28-208ENST00000597172 APCDD1LQ8NCL9 501 aa8.73□□□□□ -1.01
TRIM28-208ENST00000597172 FAM156AQ8NDB6 213 aa8.73□□□□□ -1.01
TRIM28-208ENST00000597172 B3GNT7Q8NFL0 401 aa8.73□□□□□ -1.01
TRIM28-208ENST00000597172 OR5D16Q8NGK9 328 aa8.73□□□□□ -1.01
TRIM28-208ENST00000597172 C16orf52Q8NHV5 167 aa8.73□□□□□ -1.01
TRIM28-208ENST00000597172 RAB8BQ92930 207 aa8.73□□□□□ -1.01
TRIM28-208ENST00000597172 NCLNQ969V3 563 aa8.73□□□□□ -1.01
TRIM28-208ENST00000597172 NACC2Q96BF6 587 aa8.73□□□□□ -1.01
TRIM28-208ENST00000597172 OTUB1Q96FW1 271 aaPredicted RBP8.73□□□□□ -1.01
TRIM28-208ENST00000597172 SLC35A4Q96G79 324 aa8.73□□□□□ -1.01
TRIM28-208ENST00000597172 SLC35G5Q96KT7 338 aa8.73□□□□□ -1.01
TRIM28-208ENST00000597172 VSTM2LQ96N03 204 aa8.73□□□□□ -1.01
TRIM28-208ENST00000597172 OR7D2Q96RA2 312 aa8.73□□□□□ -1.01
TRIM28-208ENST00000597172 ECSITQ9BQ95 431 aa8.73□□□□□ -1.01
TRIM28-208ENST00000597172 ACTRT3Q9BYD9 372 aa8.73□□□□□ -1.01
TRIM28-208ENST00000597172 OR8D2Q9GZM6 311 aa8.73□□□□□ -1.01
TRIM28-208ENST00000597172 OR51I1Q9H343 314 aa8.73□□□□□ -1.01
TRIM28-208ENST00000597172 GSX1Q9H4S2 264 aaPredicted RBP8.73□□□□□ -1.01
TRIM28-208ENST00000597172 FOLH1BQ9HBA9 442 aa8.73□□□□□ -1.01
TRIM28-208ENST00000597172 C19orf25Q9UFG5 118 aaPredicted RBP8.73□□□□□ -1.01
TRIM28-208ENST00000597172 BCAP29Q9UHQ4 241 aa8.73□□□□□ -1.01
TRIM28-208ENST00000597172 L3MBTL1Q9Y468 752 aa8.73□□□□□ -1.01
TRIM28-208ENST00000597172 PCDHGA9Q9Y5G4 932 aaKnown RBP8.73□□□□□ -1.01
TRIM28-208ENST00000597172 KLF2Q9Y5W3 355 aaPredicted RBP8.73□□□□□ -1.01
TRIM28-208ENST00000597172 FAM221AA4D161 298 aa8.72□□□□□ -1.01
TRIM28-208ENST00000597172 CDC14CA4D256 554 aa8.72□□□□□ -1.01
TRIM28-208ENST00000597172 KIAA1324LA8MWY0 1029 aaPredicted RBP8.72□□□□□ -1.01
TRIM28-208ENST00000597172 DYRK3O43781 588 aa8.72□□□□□ -1.01
TRIM28-208ENST00000597172 PRKNO60260 465 aaPredicted RBP8.72□□□□□ -1.01
TRIM28-208ENST00000597172 DPM1O60762 260 aa8.72□□□□□ -1.01
TRIM28-208ENST00000597172 BCAS2O75934 225 aaPredicted RBP8.72□□□□□ -1.01
TRIM28-208ENST00000597172 CT45A8P0DMV1 189 aa8.72□□□□□ -1.01
TRIM28-208ENST00000597172 CT45A9P0DMV2 189 aa8.72□□□□□ -1.01
TRIM28-208ENST00000597172 OR12D1P0DN82 309 aa8.72□□□□□ -1.01
TRIM28-208ENST00000597172 HSD17B1P14061 328 aa8.72□□□□□ -1.01
TRIM28-208ENST00000597172 NQO1P15559 274 aaKnown RBP8.72□□□□□ -1.01
TRIM28-208ENST00000597172 MAGEA8P43361 318 aa8.72□□□□□ -1.01
TRIM28-208ENST00000597172 ART1P52961 327 aa8.72□□□□□ -1.01
TRIM28-208ENST00000597172 SLC26A5P58743 744 aa8.72□□□□□ -1.01
TRIM28-208ENST00000597172 PSG6Q00889 435 aa8.72□□□□□ -1.01
TRIM28-208ENST00000597172 FADDQ13158 208 aa8.72□□□□□ -1.01
TRIM28-208ENST00000597172 FXNQ16595 210 aa8.72□□□□□ -1.01
TRIM28-208ENST00000597172 SPATS1Q496A3 300 aa8.72□□□□□ -1.01
TRIM28-208ENST00000597172 CT45A2Q5DJT8 189 aa8.72□□□□□ -1.01
TRIM28-208ENST00000597172 SAMD4BQ5PRF9 694 aaKnown RBP8.72□□□□□ -1.01
TRIM28-208ENST00000597172 C6orf163Q5TEZ5 329 aa8.72□□□□□ -1.01
TRIM28-208ENST00000597172 CDC73Q6P1J9 531 aa8.72□□□□□ -1.01
TRIM28-208ENST00000597172 TNFAIP8L2Q6P589 184 aaPredicted RBP8.72□□□□□ -1.01
TRIM28-208ENST00000597172 ZCCHC12Q6PEW1 402 aa8.72□□□□□ -1.01
TRIM28-208ENST00000597172 ANGPTL8Q6UXH0 198 aa8.72□□□□□ -1.01
TRIM28-208ENST00000597172 NPSR1Q6W5P4 371 aa8.72□□□□□ -1.01
TRIM28-208ENST00000597172 NDUFAF7Q7L592 441 aa8.72□□□□□ -1.01
TRIM28-208ENST00000597172 SZRD1Q7Z422 152 aa8.72□□□□□ -1.01
TRIM28-208ENST00000597172 SERPINA11Q86U17 422 aa8.72□□□□□ -1.01
TRIM28-208ENST00000597172 IFNEQ86WN2 208 aa8.72□□□□□ -1.01
TRIM28-208ENST00000597172 C9orf40Q8IXQ3 194 aa8.72□□□□□ -1.01
TRIM28-208ENST00000597172 ZZZ3Q8IYH5 903 aa8.72□□□□□ -1.01
TRIM28-208ENST00000597172 ULK2Q8IYT8 1036 aa8.72□□□□□ -1.01
TRIM28-208ENST00000597172 ARHGAP24Q8N264 748 aa8.72□□□□□ -1.01
TRIM28-208ENST00000597172 CISD2Q8N5K1 135 aaKnown RBP8.72□□□□□ -1.01
TRIM28-208ENST00000597172 ELP5Q8TE02 316 aa8.72□□□□□ -1.01
TRIM28-208ENST00000597172 MAL2Q969L2 176 aa8.72□□□□□ -1.01
TRIM28-208ENST00000597172 ADIPOR1Q96A54 375 aa8.72□□□□□ -1.01
TRIM28-208ENST00000597172 PNPLA2Q96AD5 504 aa8.72□□□□□ -1.01
TRIM28-208ENST00000597172 ART5Q96L15 291 aa8.72□□□□□ -1.01
TRIM28-208ENST00000597172 MS4A4EQ96PG1 132 aa8.72□□□□□ -1.01
TRIM28-208ENST00000597172 LPAR4Q99677 370 aa8.72□□□□□ -1.01
TRIM28-208ENST00000597172 LMF2Q9BU23 707 aaKnown RBP8.72□□□□□ -1.01
TRIM28-208ENST00000597172 MMADHCQ9H3L0 296 aaPredicted RBP8.72□□□□□ -1.01
TRIM28-208ENST00000597172 RAD21L1Q9H4I0 556 aa8.72□□□□□ -1.01
TRIM28-208ENST00000597172 CHST11Q9NPF2 352 aa8.72□□□□□ -1.01
TRIM28-208ENST00000597172 EQTNQ9NQ60 294 aa8.72□□□□□ -1.01
TRIM28-208ENST00000597172 GIN1Q9NXP7 522 aa8.72□□□□□ -1.01
TRIM28-208ENST00000597172 FAF1Q9UNN5 650 aaPredicted RBP8.72□□□□□ -1.01
TRIM28-208ENST00000597172 CORO2BQ9UQ03 480 aa8.72□□□□□ -1.01
TRIM28-208ENST00000597172 AP3M1Q9Y2T2 418 aa8.72□□□□□ -1.01
TRIM28-208ENST00000597172 ZNF451Q9Y4E5 1061 aa8.72□□□□□ -1.01
TRIM28-208ENST00000597172 GXYLT2A0PJZ3 443 aa8.71□□□□□ -1.02
TRIM28-208ENST00000597172 FAM220BPB1ANY3 271 aa8.71□□□□□ -1.02
TRIM28-208ENST00000597172 PRAMEF2O60811 474 aa8.71□□□□□ -1.02
TRIM28-208ENST00000597172 COQ9O75208 318 aa8.71□□□□□ -1.02
TRIM28-208ENST00000597172 GCM2O75603 506 aaPredicted RBP8.71□□□□□ -1.02
TRIM28-208ENST00000597172 NKX2-2O95096 273 aa8.71□□□□□ -1.02
TRIM28-208ENST00000597172 CELA2AP08217 269 aa8.71□□□□□ -1.02
TRIM28-208ENST00000597172 TFPTP0C1Z6 253 aa8.71□□□□□ -1.02
TRIM28-208ENST00000597172 TCN1P20061 433 aaPredicted RBP8.71□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 62.3 ms