RNA–Protein interactions for RNA: ENST00000581570.5

SS18-219, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 571 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-219ENST00000581570 GP5P40197 560 aa11.39□□□□□ -0.59
SS18-219ENST00000581570 CORO7P57737 925 aa11.39□□□□□ -0.59
SS18-219ENST00000581570 MRPS22P82650 360 aaKnown RBP11.39□□□□□ -0.59
SS18-219ENST00000581570 SRSF2Q01130 221 aaKnown RBP11.39□□□□□ -0.59
SS18-219ENST00000581570 ZNF844Q08AG5 666 aa11.39□□□□□ -0.59
SS18-219ENST00000581570 GTF2H2Q13888 395 aa11.39□□□□□ -0.59
SS18-219ENST00000581570 TMEM249Q2WGJ8 235 aa11.39□□□□□ -0.59
SS18-219ENST00000581570 PGGHGQ32M88 737 aa11.39□□□□□ -0.59
SS18-219ENST00000581570 ZNF672Q499Z4 452 aaPredicted RBP11.39□□□□□ -0.59
SS18-219ENST00000581570 NCMAPQ5T1S8 102 aa11.39□□□□□ -0.59
SS18-219ENST00000581570 FAM180BQ6P0A1 224 aa11.39□□□□□ -0.59
SS18-219ENST00000581570 GTF2H2CQ6P1K8 395 aa11.39□□□□□ -0.59
SS18-219ENST00000581570 DNAJC14Q6Y2X3 702 aaPredicted RBP11.39□□□□□ -0.59
SS18-219ENST00000581570 GOLGA7Q7Z5G4 137 aa11.39□□□□□ -0.59
SS18-219ENST00000581570 TBC1D1Q86TI0 1168 aaPredicted RBP11.39□□□□□ -0.59
SS18-219ENST00000581570 STEAP2Q8NFT2 490 aa11.39□□□□□ -0.59
SS18-219ENST00000581570 TRPC4APQ8TEL6 797 aa11.39□□□□□ -0.59
SS18-219ENST00000581570 EFHD2Q96C19 240 aaPredicted RBP11.39□□□□□ -0.59
SS18-219ENST00000581570 KLHL29Q96CT2 875 aa11.39□□□□□ -0.59
SS18-219ENST00000581570 C11orf24Q96F05 449 aaPredicted RBP11.39□□□□□ -0.59
SS18-219ENST00000581570 TNFRSF13CQ96RJ3 184 aa11.39□□□□□ -0.59
SS18-219ENST00000581570 OSBPL9Q96SU4 736 aa11.39□□□□□ -0.59
SS18-219ENST00000581570 MRPL1Q9BYD6 325 aaKnown RBP11.39□□□□□ -0.59
SS18-219ENST00000581570 SHARPINQ9H0F6 387 aa11.39□□□□□ -0.59
SS18-219ENST00000581570 ALG2Q9H553 416 aa11.39□□□□□ -0.59
SS18-219ENST00000581570 ESRP2Q9H6T0 727 aaKnown RBP11.39□□□□□ -0.59
SS18-219ENST00000581570 PTGES2Q9H7Z7 377 aa11.39□□□□□ -0.59
SS18-219ENST00000581570 ANKRA2Q9H9E1 313 aa11.39□□□□□ -0.59
SS18-219ENST00000581570 LRTM1Q9HBL6 345 aa11.39□□□□□ -0.59
SS18-219ENST00000581570 NGBQ9NPG2 151 aa11.39□□□□□ -0.59
SS18-219ENST00000581570 SDHAF3Q9NRP4 125 aa11.39□□□□□ -0.59
SS18-219ENST00000581570 ACOT9Q9Y305 439 aa11.39□□□□□ -0.59
SS18-219ENST00000581570 ZNF780BQ9Y6R6 833 aa11.39□□□□□ -0.59
SS18-219ENST00000581570 FAM234BA2RU67 622 aa11.38□□□□□ -0.59
SS18-219ENST00000581570 SYCE1LA8MT33 242 aa11.38□□□□□ -0.59
SS18-219ENST00000581570 E7ESA3 106 aa11.38□□□□□ -0.59
SS18-219ENST00000581570 CLDN9O95484 217 aa11.38□□□□□ -0.59
SS18-219ENST00000581570 LTA4HP09960 611 aaKnown RBP11.38□□□□□ -0.59
SS18-219ENST00000581570 GFAPP14136 432 aa11.38□□□□□ -0.59
SS18-219ENST00000581570 SSTR1P30872 391 aa11.38□□□□□ -0.59
SS18-219ENST00000581570 EVI2BP34910 448 aa11.38□□□□□ -0.59
SS18-219ENST00000581570 ARL1P40616 181 aaPredicted RBP11.38□□□□□ -0.59
SS18-219ENST00000581570 EIF1AXP47813 144 aaKnown RBP11.38□□□□□ -0.59
SS18-219ENST00000581570 CASP9P55211 416 aa11.38□□□□□ -0.59
SS18-219ENST00000581570 PSPHP78330 225 aa11.38□□□□□ -0.59
SS18-219ENST00000581570 RUNX1T1Q06455 604 aa11.38□□□□□ -0.59
SS18-219ENST00000581570 STX5Q13190 355 aa11.38□□□□□ -0.59
SS18-219ENST00000581570 PFKFB4Q16877 469 aa11.38□□□□□ -0.59
SS18-219ENST00000581570 CPEB4Q17RY0 729 aaKnown RBP eCLIP11.38□□□□□ -0.59
SS18-219ENST00000581570 GLYR1Q49A26 553 aaPredicted RBP11.38□□□□□ -0.59
SS18-219ENST00000581570 NPSR1Q6W5P4 371 aa11.38□□□□□ -0.59
SS18-219ENST00000581570 ZC3HAV1Q7Z2W4 902 aaKnown RBP11.38□□□□□ -0.59
SS18-219ENST00000581570 CMC1Q7Z7K0 106 aa11.38□□□□□ -0.59
SS18-219ENST00000581570 SLC44A2Q8IWA5 706 aaPredicted RBP11.38□□□□□ -0.59
SS18-219ENST00000581570 ZBED8Q8IZ13 594 aa11.38□□□□□ -0.59
SS18-219ENST00000581570 METTL4Q8N3J2 472 aa11.38□□□□□ -0.59
SS18-219ENST00000581570 OR52B6Q8NGF0 335 aa11.38□□□□□ -0.59
SS18-219ENST00000581570 UHMK1Q8TAS1 419 aaKnown RBP11.38□□□□□ -0.59
SS18-219ENST00000581570 ZDHHC16Q969W1 377 aa11.38□□□□□ -0.59
SS18-219ENST00000581570 ATP6V1E2Q96A05 226 aa11.38□□□□□ -0.59
SS18-219ENST00000581570 S100PBPQ96BU1 408 aa11.38□□□□□ -0.59
SS18-219ENST00000581570 TM4SF18Q96CE8 201 aa11.38□□□□□ -0.59
SS18-219ENST00000581570 NXNL1Q96CM4 212 aa11.38□□□□□ -0.59
SS18-219ENST00000581570 CNRIP1Q96F85 164 aaPredicted RBP11.38□□□□□ -0.59
SS18-219ENST00000581570 ZNF681Q96N22 645 aa11.38□□□□□ -0.59
SS18-219ENST00000581570 CDK15Q96Q40 435 aa11.38□□□□□ -0.59
SS18-219ENST00000581570 TRAF4Q9BUZ4 470 aaPredicted RBP11.38□□□□□ -0.59
SS18-219ENST00000581570 HDHD5Q9BXW7 423 aa11.38□□□□□ -0.59
SS18-219ENST00000581570 FOLH1BQ9HBA9 442 aa11.38□□□□□ -0.59
SS18-219ENST00000581570 ZBTB26Q9HCK0 441 aa11.38□□□□□ -0.59
SS18-219ENST00000581570 SAYSD1Q9NPB0 183 aa11.38□□□□□ -0.59
SS18-219ENST00000581570 PFDN4Q9NQP4 134 aa11.38□□□□□ -0.59
SS18-219ENST00000581570 SNX8Q9Y5X2 465 aa11.38□□□□□ -0.59
SS18-219ENST00000581570 A0A096LNT2 108 aa11.37□□□□□ -0.59
SS18-219ENST00000581570 EIF1AYO14602 144 aaKnown RBP11.37□□□□□ -0.59
SS18-219ENST00000581570 FADS1O60427 444 aa11.37□□□□□ -0.59
SS18-219ENST00000581570 SEC31AO94979 1220 aaKnown RBP11.37□□□□□ -0.59
SS18-219ENST00000581570 CD8AP01732 235 aa11.37□□□□□ -0.59
SS18-219ENST00000581570 CRABP2P29373 138 aa11.37□□□□□ -0.59
SS18-219ENST00000581570 SPRP35270 261 aaPredicted RBP11.37□□□□□ -0.59
SS18-219ENST00000581570 ALDH9A1P49189 494 aa11.37□□□□□ -0.59
SS18-219ENST00000581570 ALDH18A1P54886 795 aaKnown RBP11.37□□□□□ -0.59
SS18-219ENST00000581570 VLDLRP98155 873 aa11.37□□□□□ -0.59
SS18-219ENST00000581570 LOXL1Q08397 574 aaPredicted RBP11.37□□□□□ -0.59
SS18-219ENST00000581570 NRF1Q16656 503 aa11.37□□□□□ -0.59
SS18-219ENST00000581570 ERCC6LQ2NKX8 1250 aa11.37□□□□□ -0.59
SS18-219ENST00000581570 ZNF628Q5EBL2 1059 aa11.37□□□□□ -0.59
SS18-219ENST00000581570 LGSNQ5TDP6 509 aa11.37□□□□□ -0.59
SS18-219ENST00000581570 FRG2Q64ET8 278 aa11.37□□□□□ -0.59
SS18-219ENST00000581570 CYB5R2Q6BCY4 276 aa11.37□□□□□ -0.59
SS18-219ENST00000581570 TTC19Q6DKK2 380 aaPredicted RBP11.37□□□□□ -0.59
SS18-219ENST00000581570 COMMD6Q7Z4G1 85 aa11.37□□□□□ -0.59
SS18-219ENST00000581570 GGNQ86UU5 652 aa11.37□□□□□ -0.59
SS18-219ENST00000581570 CCDC116Q8IYX3 515 aa11.37□□□□□ -0.59
SS18-219ENST00000581570 KBTBD8Q8NFY9 601 aa11.37□□□□□ -0.59
SS18-219ENST00000581570 OR10H5Q8NGA6 315 aa11.37□□□□□ -0.59
SS18-219ENST00000581570 OR4N2Q8NGD1 307 aa11.37□□□□□ -0.59
SS18-219ENST00000581570 ZNF675Q8TD23 568 aa11.37□□□□□ -0.59
SS18-219ENST00000581570 DUSP19Q8WTR2 217 aa11.37□□□□□ -0.59
SS18-219ENST00000581570 KAT2AQ92830 837 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms