RNA–Protein interactions for RNA: ENST00000578700.5

SS18-210, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-210ENST00000578700 AGAP7PQ5VUJ5 663 aa9.45□□□□□ -0.9
SS18-210ENST00000578700 ZNF385CQ66K41 422 aaPredicted RBP9.45□□□□□ -0.9
SS18-210ENST00000578700 REEP3Q6NUK4 255 aa9.45□□□□□ -0.9
SS18-210ENST00000578700 FAM180BQ6P0A1 224 aa9.45□□□□□ -0.9
SS18-210ENST00000578700 ENPP6Q6UWR7 440 aa9.45□□□□□ -0.9
SS18-210ENST00000578700 RNF111Q6ZNA4 994 aa9.45□□□□□ -0.9
SS18-210ENST00000578700 EIF3MQ7L2H7 374 aaKnown RBP9.45□□□□□ -0.9
SS18-210ENST00000578700 PPP1R32Q7Z5V6 425 aa9.45□□□□□ -0.9
SS18-210ENST00000578700 AMIGO2Q86SJ2 522 aa9.45□□□□□ -0.9
SS18-210ENST00000578700 KRT73Q86Y46 540 aa9.45□□□□□ -0.9
SS18-210ENST00000578700 PTOV1Q86YD1 416 aa9.45□□□□□ -0.9
SS18-210ENST00000578700 GALNT4Q8N4A0 578 aa9.45□□□□□ -0.9
SS18-210ENST00000578700 OR2Y1Q8NGV0 311 aa9.45□□□□□ -0.9
SS18-210ENST00000578700 NFKBIDQ8NI38 313 aa9.45□□□□□ -0.9
SS18-210ENST00000578700 FAR1Q8WVX9 515 aa9.45□□□□□ -0.9
SS18-210ENST00000578700 RASSF5Q8WWW0 418 aa9.45□□□□□ -0.9
SS18-210ENST00000578700 TPD52L3Q96J77 140 aa9.45□□□□□ -0.9
SS18-210ENST00000578700 MAGED4Q96JG8 741 aa9.45□□□□□ -0.9
SS18-210ENST00000578700 AGAP4Q96P64 663 aa9.45□□□□□ -0.9
SS18-210ENST00000578700 BARD1Q99728 777 aaKnown RBP9.45□□□□□ -0.9
SS18-210ENST00000578700 CIB1Q99828 191 aa9.45□□□□□ -0.9
SS18-210ENST00000578700 NDC1Q9BTX1 674 aa9.45□□□□□ -0.9
SS18-210ENST00000578700 SYNPO2LQ9H987 977 aa9.45□□□□□ -0.9
SS18-210ENST00000578700 DDX18Q9NVP1 670 aaKnown RBP9.45□□□□□ -0.9
SS18-210ENST00000578700 KCMF1Q9P0J7 381 aa9.45□□□□□ -0.9
SS18-210ENST00000578700 PTGFRNQ9P2B2 879 aa9.45□□□□□ -0.9
SS18-210ENST00000578700 P2RX2Q9UBL9 471 aa9.45□□□□□ -0.9
SS18-210ENST00000578700 RAB26Q9ULW5 256 aa9.45□□□□□ -0.9
SS18-210ENST00000578700 CDC14AQ9UNH5 594 aa9.45□□□□□ -0.9
SS18-210ENST00000578700 SNRNP200O75643 2136 aaKnown RBP9.44□□□□□ -0.9
SS18-210ENST00000578700 PCNX1Q96RV3 2341 aa9.44□□□□□ -0.9
SS18-210ENST00000578700 SAC3D1A6NKF1 404 aa9.44□□□□□ -0.9
SS18-210ENST00000578700 DUXAA6NLW8 204 aa9.44□□□□□ -0.9
SS18-210ENST00000578700 SGK494L7N484 410 aa9.44□□□□□ -0.9
SS18-210ENST00000578700 HCRTR1O43613 425 aa9.44□□□□□ -0.9
SS18-210ENST00000578700 OR10H2O60403 315 aa9.44□□□□□ -0.9
SS18-210ENST00000578700 RDH16O75452 317 aa9.44□□□□□ -0.9
SS18-210ENST00000578700 JRKO75564 520 aa9.44□□□□□ -0.9
SS18-210ENST00000578700 PRKRAO75569 313 aaKnown RBP9.44□□□□□ -0.9
SS18-210ENST00000578700 SERPINB7O75635 380 aa9.44□□□□□ -0.9
SS18-210ENST00000578700 NSA2O95478 260 aaKnown RBP9.44□□□□□ -0.9
SS18-210ENST00000578700 GPR75O95800 540 aa9.44□□□□□ -0.9
SS18-210ENST00000578700 FABP3P05413 133 aa9.44□□□□□ -0.9
SS18-210ENST00000578700 UMODP07911 640 aa9.44□□□□□ -0.9
SS18-210ENST00000578700 RPSAP08865 295 aaKnown RBP9.44□□□□□ -0.9
SS18-210ENST00000578700 CD63P08962 238 aa9.44□□□□□ -0.9
SS18-210ENST00000578700 NUDT7P0C024 238 aa9.44□□□□□ -0.9
SS18-210ENST00000578700 ARAFP10398 606 aa9.44□□□□□ -0.9
SS18-210ENST00000578700 NR2F1P10589 423 aa9.44□□□□□ -0.9
SS18-210ENST00000578700 CPMP14384 443 aa9.44□□□□□ -0.9
SS18-210ENST00000578700 MATN1P21941 496 aa9.44□□□□□ -0.9
SS18-210ENST00000578700 MVDP53602 400 aa9.44□□□□□ -0.9
SS18-210ENST00000578700 AQP4P55087 323 aa9.44□□□□□ -0.9
SS18-210ENST00000578700 OLR1P78380 273 aa9.44□□□□□ -0.9
SS18-210ENST00000578700 HPCAP84074 193 aa9.44□□□□□ -0.9
SS18-210ENST00000578700 STX4Q12846 297 aa9.44□□□□□ -0.9
SS18-210ENST00000578700 BIKQ13323 160 aa9.44□□□□□ -0.9
SS18-210ENST00000578700 ZNF169Q14929 603 aaPredicted RBP9.44□□□□□ -0.9
SS18-210ENST00000578700 CEBPEQ15744 281 aa9.44□□□□□ -0.9
SS18-210ENST00000578700 PRTGQ2VWP7 1150 aa9.44□□□□□ -0.9
SS18-210ENST00000578700 NKAIN1Q4KMZ8 207 aa9.44□□□□□ -0.9
SS18-210ENST00000578700 CYBRD1Q53TN4 286 aa9.44□□□□□ -0.9
SS18-210ENST00000578700 COX20Q5RI15 118 aa9.44□□□□□ -0.9
SS18-210ENST00000578700 RHBDD2Q6NTF9 364 aa9.44□□□□□ -0.9
SS18-210ENST00000578700 TNFAIP8L2Q6P589 184 aaPredicted RBP9.44□□□□□ -0.9
SS18-210ENST00000578700 FAM180AQ6UWF9 173 aa9.44□□□□□ -0.9
SS18-210ENST00000578700 TMEM107Q6UX40 140 aa9.44□□□□□ -0.9
SS18-210ENST00000578700 LINC00696Q6ZRV3 163 aa9.44□□□□□ -0.9
SS18-210ENST00000578700 SHISA6Q6ZSJ9 500 aa9.44□□□□□ -0.9
SS18-210ENST00000578700 CBLL1Q75N03 491 aa9.44□□□□□ -0.9
SS18-210ENST00000578700 CCDC80Q76M96 950 aa9.44□□□□□ -0.9
SS18-210ENST00000578700 ZDHHC13Q8IUH4 622 aa9.44□□□□□ -0.9
SS18-210ENST00000578700 ZDHHC21Q8IVQ6 265 aa9.44□□□□□ -0.9
SS18-210ENST00000578700 ZNF595Q8IYB9 648 aa9.44□□□□□ -0.9
SS18-210ENST00000578700 CA13Q8N1Q1 262 aa9.44□□□□□ -0.9
SS18-210ENST00000578700 C10orf111Q8N326 155 aa9.44□□□□□ -0.9
SS18-210ENST00000578700 SVOPLQ8N434 492 aa9.44□□□□□ -0.9
SS18-210ENST00000578700 NUP43Q8NFH3 380 aa9.44□□□□□ -0.9
SS18-210ENST00000578700 OR9A4Q8NGU2 314 aa9.44□□□□□ -0.9
SS18-210ENST00000578700 MAL2Q969L2 176 aa9.44□□□□□ -0.9
SS18-210ENST00000578700 TBC1D20Q96BZ9 403 aa9.44□□□□□ -0.9
SS18-210ENST00000578700 CNRIP1Q96F85 164 aaPredicted RBP9.44□□□□□ -0.9
SS18-210ENST00000578700 HSH2DQ96JZ2 352 aa9.44□□□□□ -0.9
SS18-210ENST00000578700 DOHHQ9BU89 302 aa9.44□□□□□ -0.9
SS18-210ENST00000578700 EPS8L2Q9H6S3 715 aa9.44□□□□□ -0.9
SS18-210ENST00000578700 COQ10BQ9H8M1 238 aa9.44□□□□□ -0.9
SS18-210ENST00000578700 SIRT3Q9NTG7 399 aaPredicted RBP9.44□□□□□ -0.9
SS18-210ENST00000578700 EXD2Q9NVH0 621 aa9.44□□□□□ -0.9
SS18-210ENST00000578700 CALML5Q9NZT1 146 aa9.44□□□□□ -0.9
SS18-210ENST00000578700 FBXL4Q9UKA2 621 aa9.44□□□□□ -0.9
SS18-210ENST00000578700 ERVK-11Q9UQG0 969 aa9.44□□□□□ -0.9
SS18-210ENST00000578700 LIPT1Q9Y234 373 aa9.44□□□□□ -0.9
SS18-210ENST00000578700 MRPS2Q9Y399 296 aaKnown RBP9.44□□□□□ -0.9
SS18-210ENST00000578700 PCDHGB3Q9Y5G1 929 aa9.44□□□□□ -0.9
SS18-210ENST00000578700 ORC6Q9Y5N6 252 aa9.44□□□□□ -0.9
SS18-210ENST00000578700 A0A0A6YYC8 382 aaPredicted RBP9.43□□□□□ -0.9
SS18-210ENST00000578700 TRGV8A0A0C4DH27 118 aa9.43□□□□□ -0.9
SS18-210ENST00000578700 G3V2T6 193 aa9.43□□□□□ -0.9
SS18-210ENST00000578700 H0YIG0 161 aa9.43□□□□□ -0.9
SS18-210ENST00000578700 I3L1I5 382 aaPredicted RBP9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms