RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 KRT77Q7Z794 578 aa1.75□□□□□ -2.13
VPS35-207ENST00000568191 PPP1R27Q86WC6 154 aa1.75□□□□□ -2.13
VPS35-207ENST00000568191 ZNF561Q8N587 486 aa1.75□□□□□ -2.13
VPS35-207ENST00000568191 NEIL2Q969S2 332 aa1.75□□□□□ -2.13
VPS35-207ENST00000568191 DNAJA3Q96EY1 480 aa1.75□□□□□ -2.13
VPS35-207ENST00000568191 DTD2Q96FN9 168 aa1.75□□□□□ -2.13
VPS35-207ENST00000568191 IL4I1Q96RQ9 567 aa1.75□□□□□ -2.13
VPS35-207ENST00000568191 APOOQ9BUR5 198 aa1.75□□□□□ -2.13
VPS35-207ENST00000568191 TM2D1Q9BX74 207 aa1.75□□□□□ -2.13
VPS35-207ENST00000568191 NMNAT2Q9BZQ4 307 aa1.75□□□□□ -2.13
VPS35-207ENST00000568191 TSPYL1Q9H0U9 437 aa1.75□□□□□ -2.13
VPS35-207ENST00000568191 APMAPQ9HDC9 416 aa1.75□□□□□ -2.13
VPS35-207ENST00000568191 MEPEQ9NQ76 525 aaPredicted RBP1.75□□□□□ -2.13
VPS35-207ENST00000568191 TRPC4Q9UBN4 977 aa1.75□□□□□ -2.13
VPS35-207ENST00000568191 ZNF221Q9UK13 617 aa1.75□□□□□ -2.13
VPS35-207ENST00000568191 SNX5Q9Y5X3 404 aa1.75□□□□□ -2.13
VPS35-207ENST00000568191 IGLV4-60A0A075B6I1 120 aa1.74□□□□□ -2.13
VPS35-207ENST00000568191 TMEM89A2RUT3 159 aa1.74□□□□□ -2.13
VPS35-207ENST00000568191 LRIT2A6NDA9 550 aa1.74□□□□□ -2.13
VPS35-207ENST00000568191 ATP6V1G1O75348 118 aa1.74□□□□□ -2.13
VPS35-207ENST00000568191 SEMG1P04279 462 aa1.74□□□□□ -2.13
VPS35-207ENST00000568191 FCARP24071 287 aa1.74□□□□□ -2.13
VPS35-207ENST00000568191 RBMXP38159 391 aaKnown RBP1.74□□□□□ -2.13
VPS35-207ENST00000568191 NPY2RP49146 381 aa1.74□□□□□ -2.13
VPS35-207ENST00000568191 KRTAP10-10P60014 251 aa1.74□□□□□ -2.13
VPS35-207ENST00000568191 STX1BP61266 288 aa1.74□□□□□ -2.13
VPS35-207ENST00000568191 DPYSL3Q14195 570 aa1.74□□□□□ -2.13
VPS35-207ENST00000568191 TMEM52BQ4KMG9 183 aa1.74□□□□□ -2.13
VPS35-207ENST00000568191 CMPK2Q5EBM0 449 aa1.74□□□□□ -2.13
VPS35-207ENST00000568191 ZNF691Q5VV52 312 aa1.74□□□□□ -2.13
VPS35-207ENST00000568191 LIPKQ5VXJ0 399 aa1.74□□□□□ -2.13
VPS35-207ENST00000568191 NKAIN2Q5VXU1 208 aa1.74□□□□□ -2.13
VPS35-207ENST00000568191 IYDQ6PHW0 289 aa1.74□□□□□ -2.13
VPS35-207ENST00000568191 C11orf88Q6PI97 169 aa1.74□□□□□ -2.13
VPS35-207ENST00000568191 LRRC31Q6UY01 552 aa1.74□□□□□ -2.13
VPS35-207ENST00000568191 ALLCQ8N6M5 410 aa1.74□□□□□ -2.13
VPS35-207ENST00000568191 CSNK1A1LQ8N752 337 aa1.74□□□□□ -2.13
VPS35-207ENST00000568191 MLKLQ8NB16 471 aa1.74□□□□□ -2.13
VPS35-207ENST00000568191 OR9A1PQ8NGU1 263 aa1.74□□□□□ -2.13
VPS35-207ENST00000568191 C5orf30Q96GV9 206 aa1.74□□□□□ -2.13
VPS35-207ENST00000568191 PLEKHF1Q96S99 279 aa1.74□□□□□ -2.13
VPS35-207ENST00000568191 TBX15Q96SF7 602 aa1.74□□□□□ -2.13
VPS35-207ENST00000568191 NRTNQ99748 197 aa1.74□□□□□ -2.13
VPS35-207ENST00000568191 RTBDNQ9BSG5 229 aaPredicted RBP1.74□□□□□ -2.13
VPS35-207ENST00000568191 ABCG4Q9H172 646 aa1.74□□□□□ -2.13
VPS35-207ENST00000568191 C2orf40Q9H1Z8 148 aa1.74□□□□□ -2.13
VPS35-207ENST00000568191 VCXQ9H320 206 aa1.74□□□□□ -2.13
VPS35-207ENST00000568191 GLIPR2Q9H4G4 154 aa1.74□□□□□ -2.13
VPS35-207ENST00000568191 PIGVQ9NUD9 493 aa1.74□□□□□ -2.13
VPS35-207ENST00000568191 MARCH5Q9NX47 278 aa1.74□□□□□ -2.13
VPS35-207ENST00000568191 AKAP7Q9P0M2 348 aaPredicted RBP1.74□□□□□ -2.13
VPS35-207ENST00000568191 COPS7AQ9UBW8 275 aa1.74□□□□□ -2.13
VPS35-207ENST00000568191 ZNF175Q9Y473 711 aa1.74□□□□□ -2.13
VPS35-207ENST00000568191 TEX264Q9Y6I9 313 aa1.74□□□□□ -2.13
VPS35-207ENST00000568191 MUC19Q7Z5P9 8384 aa1.74□□□□□ -2.13
VPS35-207ENST00000568191 A0A0U1RRA0 63 aa1.73□□□□□ -2.13
VPS35-207ENST00000568191 LRRD1A4D1F6 860 aa1.73□□□□□ -2.13
VPS35-207ENST00000568191 E9PLD3 99 aa1.73□□□□□ -2.13
VPS35-207ENST00000568191 ADAM12O43184 909 aa1.73□□□□□ -2.13
VPS35-207ENST00000568191 SNAI2O43623 268 aa1.73□□□□□ -2.13
VPS35-207ENST00000568191 VEGFDO43915 354 aa1.73□□□□□ -2.13
VPS35-207ENST00000568191 IGSF6O95976 241 aa1.73□□□□□ -2.13
VPS35-207ENST00000568191 STSP08842 583 aa1.73□□□□□ -2.13
VPS35-207ENST00000568191 MARCKSP29966 332 aaPredicted RBP1.73□□□□□ -2.13
VPS35-207ENST00000568191 NTSP30990 170 aa1.73□□□□□ -2.13
VPS35-207ENST00000568191 RFC2P35250 354 aa1.73□□□□□ -2.13
VPS35-207ENST00000568191 STK19P49842 368 aaPredicted RBP1.73□□□□□ -2.13
VPS35-207ENST00000568191 GPC3P51654 580 aa1.73□□□□□ -2.13
VPS35-207ENST00000568191 CCL11P51671 97 aa1.73□□□□□ -2.13
VPS35-207ENST00000568191 SGSHP51688 502 aa1.73□□□□□ -2.13
VPS35-207ENST00000568191 CNN1P51911 297 aaKnown RBP1.73□□□□□ -2.13
VPS35-207ENST00000568191 KIAA1024LP59773 190 aa1.73□□□□□ -2.13
VPS35-207ENST00000568191 CYP51A1Q16850 503 aa1.73□□□□□ -2.13
VPS35-207ENST00000568191 SMU1Q2TAY7 513 aa1.73□□□□□ -2.13
VPS35-207ENST00000568191 ZNF699Q32M78 642 aa1.73□□□□□ -2.13
VPS35-207ENST00000568191 B3GLCTQ6Y288 498 aa1.73□□□□□ -2.13
VPS35-207ENST00000568191 CNTN4Q8IWV2 1026 aa1.73□□□□□ -2.13
VPS35-207ENST00000568191 ZNF433Q8N7K0 673 aaPredicted RBP1.73□□□□□ -2.13
VPS35-207ENST00000568191 ARIH2OSQ8N7S6 290 aa1.73□□□□□ -2.13
VPS35-207ENST00000568191 CCDC71LQ8N9Z2 235 aa1.73□□□□□ -2.13
VPS35-207ENST00000568191 COLGALT1Q8NBJ5 622 aa1.73□□□□□ -2.13
VPS35-207ENST00000568191 ZNF540Q8NDQ6 660 aa1.73□□□□□ -2.13
VPS35-207ENST00000568191 ZNF397Q8NF99 534 aaPredicted RBP1.73□□□□□ -2.13
VPS35-207ENST00000568191 TMEM37Q8WXS4 190 aa1.73□□□□□ -2.13
VPS35-207ENST00000568191 DLX4Q92988 240 aaPredicted RBP1.73□□□□□ -2.13
VPS35-207ENST00000568191 SNX21Q969T3 373 aa1.73□□□□□ -2.13
VPS35-207ENST00000568191 ATP6V1E2Q96A05 226 aa1.73□□□□□ -2.13
VPS35-207ENST00000568191 C11orf24Q96F05 449 aaPredicted RBP1.73□□□□□ -2.13
VPS35-207ENST00000568191 CCSER1Q9C0I3 900 aa1.73□□□□□ -2.13
VPS35-207ENST00000568191 IL1RAPL2Q9NP60 686 aa1.73□□□□□ -2.13
VPS35-207ENST00000568191 STARD5Q9NSY2 213 aa1.73□□□□□ -2.13
VPS35-207ENST00000568191 RBM28Q9NW13 759 aaKnown RBP1.73□□□□□ -2.13
VPS35-207ENST00000568191 CD274Q9NZQ7 290 aa1.73□□□□□ -2.13
VPS35-207ENST00000568191 MIOXQ9UGB7 285 aa1.73□□□□□ -2.13
VPS35-207ENST00000568191 MAD2L2Q9UI95 211 aa1.73□□□□□ -2.13
VPS35-207ENST00000568191 PURGQ9UJV8 347 aaKnown RBP1.73□□□□□ -2.13
VPS35-207ENST00000568191 ZNF223Q9UK11 482 aaPredicted RBP1.73□□□□□ -2.13
VPS35-207ENST00000568191 CACNG2Q9Y698 323 aa1.73□□□□□ -2.13
VPS35-207ENST00000568191 GTF3C1Q12789 2109 aa1.73□□□□□ -2.13
VPS35-207ENST00000568191 GAKO14976 1311 aa1.72□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms