RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 ASMTP46597 345 aa18.84■□□□□ 0.61
CLN3-219ENST00000565778 STARP49675 285 aa18.84■□□□□ 0.61
CLN3-219ENST00000565778 CLK3P49761 638 aaKnown RBP18.84■□□□□ 0.61
CLN3-219ENST00000565778 GAS1P54826 345 aa18.84■□□□□ 0.61
CLN3-219ENST00000565778 DLX5P56178 289 aa18.84■□□□□ 0.61
CLN3-219ENST00000565778 ZNF385BQ569K4 471 aa18.84■□□□□ 0.61
CLN3-219ENST00000565778 AAGABQ6PD74 315 aa18.84■□□□□ 0.61
CLN3-219ENST00000565778 ARSKQ6UWY0 536 aa18.84■□□□□ 0.61
CLN3-219ENST00000565778 ZBED6CLQ96FA7 236 aaPredicted RBP18.84■□□□□ 0.61
CLN3-219ENST00000565778 LRRC46Q96FV0 321 aa18.84■□□□□ 0.61
CLN3-219ENST00000565778 TMEM109Q9BVC6 243 aa18.84■□□□□ 0.61
CLN3-219ENST00000565778 PARD6BQ9BYG5 372 aa18.84■□□□□ 0.61
CLN3-219ENST00000565778 C3orf14Q9HBI5 128 aa18.84■□□□□ 0.61
CLN3-219ENST00000565778 EQTNQ9NQ60 294 aa18.84■□□□□ 0.61
CLN3-219ENST00000565778 PPP4R1LQ9P1A2 415 aa18.84■□□□□ 0.61
CLN3-219ENST00000565778 KCNN3Q9UGI6 736 aa18.84■□□□□ 0.61
CLN3-219ENST00000565778 RPH3AQ9Y2J0 694 aaPredicted RBP18.84■□□□□ 0.61
CLN3-219ENST00000565778 MRPS18CQ9Y3D5 142 aaKnown RBP18.84■□□□□ 0.61
CLN3-219ENST00000565778 HCFC1P51610 2035 aa18.84■□□□□ 0.61
CLN3-219ENST00000565778 EXPH5Q8NEV8 1989 aa18.84■□□□□ 0.61
CLN3-219ENST00000565778 TTC36A6NLP5 189 aa18.83■□□□□ 0.6
CLN3-219ENST00000565778 H0Y3Z8 333 aa18.83■□□□□ 0.6
CLN3-219ENST00000565778 SYT5O00445 386 aa18.83■□□□□ 0.6
CLN3-219ENST00000565778 TBX19O60806 448 aa18.83■□□□□ 0.6
CLN3-219ENST00000565778 IL33O95760 270 aa18.83■□□□□ 0.6
CLN3-219ENST00000565778 BCKDHAP12694 445 aa18.83■□□□□ 0.6
CLN3-219ENST00000565778 UQCRC1P31930 480 aa18.83■□□□□ 0.6
CLN3-219ENST00000565778 EVI2BP34910 448 aa18.83■□□□□ 0.6
CLN3-219ENST00000565778 SERPINB5P36952 375 aa18.83■□□□□ 0.6
CLN3-219ENST00000565778 AGFG1P52594 562 aaKnown RBP18.83■□□□□ 0.6
CLN3-219ENST00000565778 PSMD4P55036 377 aaKnown RBP18.83■□□□□ 0.6
CLN3-219ENST00000565778 KRT71Q3SY84 523 aa18.83■□□□□ 0.6
CLN3-219ENST00000565778 SZRD1Q7Z422 152 aa18.83■□□□□ 0.6
CLN3-219ENST00000565778 NUP43Q8NFH3 380 aa18.83■□□□□ 0.6
CLN3-219ENST00000565778 CEP70Q8NHQ1 597 aa18.83■□□□□ 0.6
CLN3-219ENST00000565778 GPR151Q8TDV0 419 aa18.83■□□□□ 0.6
CLN3-219ENST00000565778 RNF138Q8WVD3 245 aa18.83■□□□□ 0.6
CLN3-219ENST00000565778 PPP3R2Q96LZ3 170 aa18.83■□□□□ 0.6
CLN3-219ENST00000565778 SFXN2Q96NB2 322 aa18.83■□□□□ 0.6
CLN3-219ENST00000565778 TUBA1CQ9BQE3 449 aa18.83■□□□□ 0.6
CLN3-219ENST00000565778 LMF2Q9BU23 707 aaKnown RBP18.83■□□□□ 0.6
CLN3-219ENST00000565778 DSN1Q9H410 356 aa18.83■□□□□ 0.6
CLN3-219ENST00000565778 TMEM114B3SHH9 223 aa18.82■□□□□ 0.6
CLN3-219ENST00000565778 CTIFO43310 598 aaKnown RBP18.82■□□□□ 0.6
CLN3-219ENST00000565778 FADS1O60427 444 aa18.82■□□□□ 0.6
CLN3-219ENST00000565778 ZIC3O60481 467 aa18.82■□□□□ 0.6
CLN3-219ENST00000565778 KCNH1O95259 989 aa18.82■□□□□ 0.6
CLN3-219ENST00000565778 BPGMP07738 259 aa18.82■□□□□ 0.6
CLN3-219ENST00000565778 IFI6P09912 130 aa18.82■□□□□ 0.6
CLN3-219ENST00000565778 DDX5P17844 614 aaKnown RBP18.82■□□□□ 0.6
CLN3-219ENST00000565778 CTSSP25774 331 aa18.82■□□□□ 0.6
CLN3-219ENST00000565778 ZNF136P52737 540 aa18.82■□□□□ 0.6
CLN3-219ENST00000565778 GFRA1P56159 465 aa18.82■□□□□ 0.6
CLN3-219ENST00000565778 DSCR4P56555 118 aaPredicted RBP18.82■□□□□ 0.6
CLN3-219ENST00000565778 SNTB1Q13884 538 aaKnown RBP18.82■□□□□ 0.6
CLN3-219ENST00000565778 VPS26BQ4G0F5 336 aa18.82■□□□□ 0.6
CLN3-219ENST00000565778 R3HCC1LQ7Z5L2 792 aaKnown RBP18.82■□□□□ 0.6
CLN3-219ENST00000565778 NUDCD3Q8IVD9 361 aa18.82■□□□□ 0.6
CLN3-219ENST00000565778 RELL2Q8NC24 303 aaPredicted RBP18.82■□□□□ 0.6
CLN3-219ENST00000565778 PPP1R14CQ8TAE6 165 aa18.82■□□□□ 0.6
CLN3-219ENST00000565778 DUSP19Q8WTR2 217 aa18.82■□□□□ 0.6
CLN3-219ENST00000565778 MTERF3Q96E29 417 aa18.82■□□□□ 0.6
CLN3-219ENST00000565778 ZNF764Q96H86 408 aaPredicted RBP18.82■□□□□ 0.6
CLN3-219ENST00000565778 ACSS1Q9NUB1 689 aaPredicted RBP18.82■□□□□ 0.6
CLN3-219ENST00000565778 FLRT3Q9NZU0 649 aa18.82■□□□□ 0.6
CLN3-219ENST00000565778 MED11Q9P086 117 aa18.82■□□□□ 0.6
CLN3-219ENST00000565778 GIMAP2Q9UG22 337 aa18.82■□□□□ 0.6
CLN3-219ENST00000565778 ZDHHC2Q9UIJ5 367 aa18.82■□□□□ 0.6
CLN3-219ENST00000565778 GXYLT2A0PJZ3 443 aa18.81■□□□□ 0.6
CLN3-219ENST00000565778 MBD3L4A6NDZ8 208 aaPredicted RBP18.81■□□□□ 0.6
CLN3-219ENST00000565778 MBD3L3A6NE82 208 aaPredicted RBP18.81■□□□□ 0.6
CLN3-219ENST00000565778 MBD3L5A6NJ08 208 aaPredicted RBP18.81■□□□□ 0.6
CLN3-219ENST00000565778 C17orf51A8MQB3 221 aa18.81■□□□□ 0.6
CLN3-219ENST00000565778 RGS16O15492 202 aaPredicted RBP18.81■□□□□ 0.6
CLN3-219ENST00000565778 TYROBPO43914 113 aa18.81■□□□□ 0.6
CLN3-219ENST00000565778 ZNF500O60304 480 aaPredicted RBP18.81■□□□□ 0.6
CLN3-219ENST00000565778 CHMP24386 653 aa18.81■□□□□ 0.6
CLN3-219ENST00000565778 MAPK1P28482 360 aa18.81■□□□□ 0.6
CLN3-219ENST00000565778 DGKQP52824 942 aa18.81■□□□□ 0.6
CLN3-219ENST00000565778 STX5Q13190 355 aa18.81■□□□□ 0.6
CLN3-219ENST00000565778 PDE7AQ13946 482 aa18.81■□□□□ 0.6
CLN3-219ENST00000565778 ATP6AP1LQ52LC2 224 aa18.81■□□□□ 0.6
CLN3-219ENST00000565778 LRIG3Q6UXM1 1119 aa18.81■□□□□ 0.6
CLN3-219ENST00000565778 MARCH3Q86UD3 253 aa18.81■□□□□ 0.6
CLN3-219ENST00000565778 EXOC3L1Q86VI1 746 aa18.81■□□□□ 0.6
CLN3-219ENST00000565778 MREGQ8N565 214 aa18.81■□□□□ 0.6
CLN3-219ENST00000565778 MBD3L2Q8NHZ7 208 aaPredicted RBP18.81■□□□□ 0.6
CLN3-219ENST00000565778 PIK3R3Q92569 461 aa18.81■□□□□ 0.6
CLN3-219ENST00000565778 SLC9A6Q92581 669 aa18.81■□□□□ 0.6
CLN3-219ENST00000565778 ABCG2Q9UNQ0 655 aa18.81■□□□□ 0.6
CLN3-219ENST00000565778 WDR91A4D1P6 747 aa18.8■□□□□ 0.6
CLN3-219ENST00000565778 EMC8O43402 210 aa18.8■□□□□ 0.6
CLN3-219ENST00000565778 SKAP2O75563 359 aaPredicted RBP18.8■□□□□ 0.6
CLN3-219ENST00000565778 ZWINTO95229 277 aa18.8■□□□□ 0.6
CLN3-219ENST00000565778 UTS2O95399 124 aa18.8■□□□□ 0.6
CLN3-219ENST00000565778 EFNA1P20827 205 aaPredicted RBP18.8■□□□□ 0.6
CLN3-219ENST00000565778 OPRM1P35372 400 aa18.8■□□□□ 0.6
CLN3-219ENST00000565778 FRKP42685 505 aaPredicted RBP18.8■□□□□ 0.6
CLN3-219ENST00000565778 KIR2DL3P43628 341 aa18.8■□□□□ 0.6
CLN3-219ENST00000565778 LHX2P50458 406 aa18.8■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms