RNA–Protein interactions for RNA: ENST00000564593.1

LINC00560-201, long intergenic non-protein coding RNA 560, humanhuman

TSL 1 (best) BASIC

Gene LINC00560, Length 1,599 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00560-201ENST00000564593 IL9RQ01113 521 aa3.7□□□□□ -1.82
LINC00560-201ENST00000564593 ZFP36L1Q07352 338 aaKnown RBP3.7□□□□□ -1.82
LINC00560-201ENST00000564593 ZP4Q12836 540 aa3.7□□□□□ -1.82
LINC00560-201ENST00000564593 ZNF562Q6V9R5 426 aa3.7□□□□□ -1.82
LINC00560-201ENST00000564593 LPCAT2Q7L5N7 544 aa3.7□□□□□ -1.82
LINC00560-201ENST00000564593 PRSS48Q7RTY5 328 aa3.7□□□□□ -1.82
LINC00560-201ENST00000564593 NET1Q7Z628 596 aaPredicted RBP3.7□□□□□ -1.82
LINC00560-201ENST00000564593 CNPY4Q8N129 248 aa3.7□□□□□ -1.82
LINC00560-201ENST00000564593 ZNF671Q8TAW3 534 aa3.7□□□□□ -1.82
LINC00560-201ENST00000564593 CRYGNQ8WXF5 182 aa3.7□□□□□ -1.82
LINC00560-201ENST00000564593 FICDQ9BVA6 458 aa3.7□□□□□ -1.82
LINC00560-201ENST00000564593 CARD6Q9BX69 1037 aa3.7□□□□□ -1.82
LINC00560-201ENST00000564593 RAI14Q9P0K7 980 aa3.7□□□□□ -1.82
LINC00560-201ENST00000564593 CDC42BPBQ9Y5S2 1711 aa3.7□□□□□ -1.82
LINC00560-201ENST00000564593 KDM6BO15054 1643 aa3.7□□□□□ -1.82
LINC00560-201ENST00000564593 IQGAP3Q86VI3 1631 aa3.7□□□□□ -1.82
LINC00560-201ENST00000564593 A0A087WZY1 265 aa3.69□□□□□ -1.82
LINC00560-201ENST00000564593 A0A0U1RQV5 110 aa3.69□□□□□ -1.82
LINC00560-201ENST00000564593 RNF222A6NCQ9 220 aa3.69□□□□□ -1.82
LINC00560-201ENST00000564593 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP3.69□□□□□ -1.82
LINC00560-201ENST00000564593 CHADO15335 359 aa3.69□□□□□ -1.82
LINC00560-201ENST00000564593 SMPD2O60906 423 aa3.69□□□□□ -1.82
LINC00560-201ENST00000564593 AK1P00568 194 aa3.69□□□□□ -1.82
LINC00560-201ENST00000564593 HPP00738 406 aa3.69□□□□□ -1.82
LINC00560-201ENST00000564593 TSPY4P0CV99 314 aa3.69□□□□□ -1.82
LINC00560-201ENST00000564593 TSPY10P0CW01 314 aa3.69□□□□□ -1.82
LINC00560-201ENST00000564593 CYP2F1P24903 491 aa3.69□□□□□ -1.82
LINC00560-201ENST00000564593 HMGCLP35914 325 aa3.69□□□□□ -1.82
LINC00560-201ENST00000564593 ELK3P41970 407 aa3.69□□□□□ -1.82
LINC00560-201ENST00000564593 ZNF33BQ06732 778 aa3.69□□□□□ -1.82
LINC00560-201ENST00000564593 EXOSC2Q13868 293 aaKnown RBP3.69□□□□□ -1.82
LINC00560-201ENST00000564593 KRTAP27-1Q3LI81 207 aa3.69□□□□□ -1.82
LINC00560-201ENST00000564593 DNAJC21Q5F1R6 531 aaKnown RBP3.69□□□□□ -1.82
LINC00560-201ENST00000564593 MS4A13Q5J8X5 152 aa3.69□□□□□ -1.82
LINC00560-201ENST00000564593 PNCKQ6P2M8 343 aa3.69□□□□□ -1.82
LINC00560-201ENST00000564593 LEG1Q6P5S2 330 aa3.69□□□□□ -1.82
LINC00560-201ENST00000564593 Q7L0L9 218 aa3.69□□□□□ -1.82
LINC00560-201ENST00000564593 ERASQ7Z444 233 aa3.69□□□□□ -1.82
LINC00560-201ENST00000564593 HIPK1Q86Z02 1210 aa3.69□□□□□ -1.82
LINC00560-201ENST00000564593 CCDC36Q8IYA8 594 aa3.69□□□□□ -1.82
LINC00560-201ENST00000564593 SLC22A18ASQ8N1D0 253 aa3.69□□□□□ -1.82
LINC00560-201ENST00000564593 FGFRL1Q8N441 504 aa3.69□□□□□ -1.82
LINC00560-201ENST00000564593 OR6T1Q8NGN1 323 aa3.69□□□□□ -1.82
LINC00560-201ENST00000564593 TBCKQ8TEA7 893 aa3.69□□□□□ -1.82
LINC00560-201ENST00000564593 DNAJA3Q96EY1 480 aa3.69□□□□□ -1.82
LINC00560-201ENST00000564593 WBP1Q96G27 269 aa3.69□□□□□ -1.82
LINC00560-201ENST00000564593 DUS2Q9NX74 493 aaKnown RBP3.69□□□□□ -1.82
LINC00560-201ENST00000564593 ATP6V1HQ9UI12 483 aa3.69□□□□□ -1.82
LINC00560-201ENST00000564593 U3KQV3 271 aa3.69□□□□□ -1.82
LINC00560-201ENST00000564593 E9PCH4 1651 aa3.69□□□□□ -1.82
LINC00560-201ENST00000564593 CFAP74Q9C0B2 1584 aa3.69□□□□□ -1.82
LINC00560-201ENST00000564593 ARHGAP5Q13017 1502 aa3.69□□□□□ -1.82
LINC00560-201ENST00000564593 ZMYM4Q5VZL5 1548 aa3.69□□□□□ -1.82
LINC00560-201ENST00000564593 ABCC2Q92887 1545 aa3.69□□□□□ -1.82
LINC00560-201ENST00000564593 DUOX2Q9NRD8 1548 aa3.69□□□□□ -1.82
LINC00560-201ENST00000564593 PZPP20742 1482 aa3.69□□□□□ -1.82
LINC00560-201ENST00000564593 ABCC10Q5T3U5 1492 aa3.69□□□□□ -1.82
LINC00560-201ENST00000564593 PLB1Q6P1J6 1458 aa3.69□□□□□ -1.82
LINC00560-201ENST00000564593 UHRF1BP1Q6BDS2 1440 aa3.69□□□□□ -1.82
LINC00560-201ENST00000564593 CCDC7Q96M83 1385 aa3.69□□□□□ -1.82
LINC00560-201ENST00000564593 IGHV3OR16-12A0A075B7B8 117 aa3.68□□□□□ -1.82
LINC00560-201ENST00000564593 FBLL1A6NHQ2 334 aaKnown RBP3.68□□□□□ -1.82
LINC00560-201ENST00000564593 WASH3PC4AMC7 463 aa3.68□□□□□ -1.82
LINC00560-201ENST00000564593 E9PAM4 449 aa3.68□□□□□ -1.82
LINC00560-201ENST00000564593 CLDN3O15551 220 aa3.68□□□□□ -1.82
LINC00560-201ENST00000564593 PHF1O43189 567 aaPredicted RBP3.68□□□□□ -1.82
LINC00560-201ENST00000564593 VENTXO95231 258 aa3.68□□□□□ -1.82
LINC00560-201ENST00000564593 IGHV3-9P01782 118 aa3.68□□□□□ -1.82
LINC00560-201ENST00000564593 WNT2P09544 360 aa3.68□□□□□ -1.82
LINC00560-201ENST00000564593 FOLR2P14207 255 aa3.68□□□□□ -1.82
LINC00560-201ENST00000564593 NCF1P14598 390 aaPredicted RBP3.68□□□□□ -1.82
LINC00560-201ENST00000564593 DPP4P27487 766 aa3.68□□□□□ -1.82
LINC00560-201ENST00000564593 AXLP30530 894 aa3.68□□□□□ -1.82
LINC00560-201ENST00000564593 HPDP32754 393 aaPredicted RBP3.68□□□□□ -1.82
LINC00560-201ENST00000564593 TRPC1P48995 793 aa3.68□□□□□ -1.82
LINC00560-201ENST00000564593 AFTPHQ6ULP2 937 aa3.68□□□□□ -1.82
LINC00560-201ENST00000564593 WASH2PQ6VEQ5 465 aa3.68□□□□□ -1.82
LINC00560-201ENST00000564593 NFAM1Q8NET5 270 aaPredicted RBP3.68□□□□□ -1.82
LINC00560-201ENST00000564593 FAM222BQ8WU58 562 aa3.68□□□□□ -1.82
LINC00560-201ENST00000564593 RSPH1Q8WYR4 309 aa3.68□□□□□ -1.82
LINC00560-201ENST00000564593 ARMCX1Q9P291 453 aa3.68□□□□□ -1.82
LINC00560-201ENST00000564593 CHMP2BQ9UQN3 213 aa3.68□□□□□ -1.82
LINC00560-201ENST00000564593 CEP152O94986 1710 aa3.68□□□□□ -1.82
LINC00560-201ENST00000564593 CCDC144AA2RUR9 1427 aa3.68□□□□□ -1.82
LINC00560-201ENST00000564593 PTPRGP23470 1445 aa3.68□□□□□ -1.82
LINC00560-201ENST00000564593 ERBINQ96RT1 1412 aa3.68□□□□□ -1.82
LINC00560-201ENST00000564593 USP47Q96K76 1375 aa3.68□□□□□ -1.82
LINC00560-201ENST00000564593 KIF15Q9NS87 1388 aa3.68□□□□□ -1.82
LINC00560-201ENST00000564593 TRPM1Q7Z4N2 1603 aa3.68□□□□□ -1.82
LINC00560-201ENST00000564593 ZBED9Q6R2W3 1325 aa3.68□□□□□ -1.82
LINC00560-201ENST00000564593 SAMD9LQ8IVG5 1584 aa3.68□□□□□ -1.82
LINC00560-201ENST00000564593 LANCL1O43813 399 aa3.68□□□□□ -1.82
LINC00560-201ENST00000564593 HEXBP07686 556 aa3.68□□□□□ -1.82
LINC00560-201ENST00000564593 FAM200BP0CF97 657 aa3.68□□□□□ -1.82
LINC00560-201ENST00000564593 PVRP15151 417 aa3.68□□□□□ -1.82
LINC00560-201ENST00000564593 GATA1P15976 413 aaPredicted RBP3.68□□□□□ -1.82
LINC00560-201ENST00000564593 TNNI3P19429 210 aa3.68□□□□□ -1.82
LINC00560-201ENST00000564593 ADRA1AP35348 466 aa3.68□□□□□ -1.82
LINC00560-201ENST00000564593 MDH1P40925 334 aaKnown RBP3.68□□□□□ -1.82
LINC00560-201ENST00000564593 PTGFRP43088 359 aa3.68□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms