RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 CIARTQ8N365 385 aaPredicted RBP15.22■□□□□ 0.03
CLN3-211ENST00000564091 GBP7Q8N8V2 638 aaPredicted RBP15.22■□□□□ 0.03
CLN3-211ENST00000564091 FADS6Q8N9I5 356 aa15.22■□□□□ 0.03
CLN3-211ENST00000564091 OR2M3Q8NG83 312 aa15.22■□□□□ 0.03
CLN3-211ENST00000564091 DTNBP1Q96EV8 351 aa15.22■□□□□ 0.03
CLN3-211ENST00000564091 PIK3IP1Q96FE7 263 aa15.22■□□□□ 0.03
CLN3-211ENST00000564091 PGM2Q96G03 612 aa15.22■□□□□ 0.03
CLN3-211ENST00000564091 ZNF382Q96SR6 550 aa15.22■□□□□ 0.03
CLN3-211ENST00000564091 MED18Q9BUE0 208 aa15.22■□□□□ 0.03
CLN3-211ENST00000564091 RTN4RQ9BZR6 473 aa15.22■□□□□ 0.03
CLN3-211ENST00000564091 TAS2R9Q9NYW1 312 aa15.22■□□□□ 0.03
CLN3-211ENST00000564091 TMEM216Q9P0N5 145 aa15.22■□□□□ 0.03
CLN3-211ENST00000564091 TIMM22Q9Y584 194 aa15.22■□□□□ 0.03
CLN3-211ENST00000564091 NSD1Q96L73 2696 aaPredicted RBP15.22■□□□□ 0.03
CLN3-211ENST00000564091 SEC14L5O43304 696 aa15.21■□□□□ 0.03
CLN3-211ENST00000564091 SMPD2O60906 423 aa15.21■□□□□ 0.03
CLN3-211ENST00000564091 LY6G6DO95868 133 aa15.21■□□□□ 0.03
CLN3-211ENST00000564091 CRHP06850 196 aa15.21■□□□□ 0.03
CLN3-211ENST00000564091 SNRPAP09012 282 aaKnown RBP15.21■□□□□ 0.03
CLN3-211ENST00000564091 TAC1P20366 129 aa15.21■□□□□ 0.03
CLN3-211ENST00000564091 TIA1P31483 386 aaKnown RBP eCLIP15.21■□□□□ 0.03
CLN3-211ENST00000564091 MPIP34949 423 aa15.21■□□□□ 0.03
CLN3-211ENST00000564091 CD79BP40259 229 aa15.21■□□□□ 0.03
CLN3-211ENST00000564091 MC3RP41968 323 aa15.21■□□□□ 0.03
CLN3-211ENST00000564091 PSPHP78330 225 aa15.21■□□□□ 0.03
CLN3-211ENST00000564091 MRPS22P82650 360 aaKnown RBP15.21■□□□□ 0.03
CLN3-211ENST00000564091 OR2A2Q6IF42 318 aa15.21■□□□□ 0.03
CLN3-211ENST00000564091 ZNF550Q7Z398 422 aa15.21■□□□□ 0.03
CLN3-211ENST00000564091 MEIOBQ8N635 442 aa15.21■□□□□ 0.03
CLN3-211ENST00000564091 BBS4Q96RK4 519 aa15.21■□□□□ 0.03
CLN3-211ENST00000564091 KCNA7Q96RP8 456 aa15.21■□□□□ 0.03
CLN3-211ENST00000564091 FMO2Q99518 471 aa15.21■□□□□ 0.03
CLN3-211ENST00000564091 PINK1Q9BXM7 581 aa15.21■□□□□ 0.03
CLN3-211ENST00000564091 UBTD1Q9HAC8 227 aa15.21■□□□□ 0.03
CLN3-211ENST00000564091 ZNF337Q9Y3M9 751 aa15.21■□□□□ 0.03
CLN3-211ENST00000564091 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP15.21■□□□□ 0.03
CLN3-211ENST00000564091 DOCK7Q96N67 2140 aa15.2■□□□□ 0.02
CLN3-211ENST00000564091 H7C1Q1 480 aa15.2■□□□□ 0.02
CLN3-211ENST00000564091 FADS1O60427 444 aa15.2■□□□□ 0.02
CLN3-211ENST00000564091 JUNP05412 331 aaKnown RBP15.2■□□□□ 0.02
CLN3-211ENST00000564091 HEXAP06865 529 aa15.2■□□□□ 0.02
CLN3-211ENST00000564091 POU2F1P14859 743 aa15.2■□□□□ 0.02
CLN3-211ENST00000564091 IMPDH1P20839 514 aa15.2■□□□□ 0.02
CLN3-211ENST00000564091 ECHS1P30084 290 aa15.2■□□□□ 0.02
CLN3-211ENST00000564091 CCKARP32238 428 aa15.2■□□□□ 0.02
CLN3-211ENST00000564091 UGT2B10P36537 528 aa15.2■□□□□ 0.02
CLN3-211ENST00000564091 KCNJ5P48544 419 aa15.2■□□□□ 0.02
CLN3-211ENST00000564091 CLDN20P56880 219 aa15.2■□□□□ 0.02
CLN3-211ENST00000564091 ACKR1Q16570 336 aa15.2■□□□□ 0.02
CLN3-211ENST00000564091 SPIN4Q56A73 249 aa15.2■□□□□ 0.02
CLN3-211ENST00000564091 C22orf34Q6ZV56 151 aa15.2■□□□□ 0.02
CLN3-211ENST00000564091 CDC26Q8NHZ8 85 aa15.2■□□□□ 0.02
CLN3-211ENST00000564091 FNDC9Q8TBE3 224 aa15.2■□□□□ 0.02
CLN3-211ENST00000564091 DUSP19Q8WTR2 217 aa15.2■□□□□ 0.02
CLN3-211ENST00000564091 PIGTQ969N2 578 aa15.2■□□□□ 0.02
CLN3-211ENST00000564091 ARSGQ96EG1 525 aa15.2■□□□□ 0.02
CLN3-211ENST00000564091 C11orf24Q96F05 449 aaPredicted RBP15.2■□□□□ 0.02
CLN3-211ENST00000564091 ZC3HAV1LQ96H79 300 aaKnown RBP15.2■□□□□ 0.02
CLN3-211ENST00000564091 ZNF845Q96IR2 970 aaPredicted RBP15.2■□□□□ 0.02
CLN3-211ENST00000564091 HS3ST6Q96QI5 342 aa15.2■□□□□ 0.02
CLN3-211ENST00000564091 PIGQQ9BRB3 760 aa15.2■□□□□ 0.02
CLN3-211ENST00000564091 ZNF226Q9NYT6 803 aa15.2■□□□□ 0.02
CLN3-211ENST00000564091 CSPG4Q6UVK1 2322 aa15.19■□□□□ 0.02
CLN3-211ENST00000564091 A0A087WUV0 522 aaPredicted RBP15.19■□□□□ 0.02
CLN3-211ENST00000564091 OR2M5A3KFT3 312 aa15.19■□□□□ 0.02
CLN3-211ENST00000564091 MYO1GB0I1T2 1018 aa15.19■□□□□ 0.02
CLN3-211ENST00000564091 H3BML4 177 aa15.19■□□□□ 0.02
CLN3-211ENST00000564091 COQ9O75208 318 aa15.19■□□□□ 0.02
CLN3-211ENST00000564091 TNFRSF21O75509 655 aa15.19■□□□□ 0.02
CLN3-211ENST00000564091 CGAP01215 116 aa15.19■□□□□ 0.02
CLN3-211ENST00000564091 ANXA4P09525 319 aaPredicted RBP15.19■□□□□ 0.02
CLN3-211ENST00000564091 DDCP20711 480 aa15.19■□□□□ 0.02
CLN3-211ENST00000564091 CRYGSP22914 178 aa15.19■□□□□ 0.02
CLN3-211ENST00000564091 RFX3P48380 749 aa15.19■□□□□ 0.02
CLN3-211ENST00000564091 NCBP2P52298 156 aaKnown RBP eCLIP15.19■□□□□ 0.02
CLN3-211ENST00000564091 EEFSECP57772 596 aaKnown RBP15.19■□□□□ 0.02
CLN3-211ENST00000564091 C2orf80Q0P641 193 aa15.19■□□□□ 0.02
CLN3-211ENST00000564091 ANKRD34AQ69YU3 496 aa15.19■□□□□ 0.02
CLN3-211ENST00000564091 GALNT18Q6P9A2 607 aa15.19■□□□□ 0.02
CLN3-211ENST00000564091 TMEM107Q6UX40 140 aa15.19■□□□□ 0.02
CLN3-211ENST00000564091 MARCH3Q86UD3 253 aa15.19■□□□□ 0.02
CLN3-211ENST00000564091 LRRC75A-AS1Q8N1F1 130 aa15.19■□□□□ 0.02
CLN3-211ENST00000564091 ZNF610Q8N9Z0 462 aa15.19■□□□□ 0.02
CLN3-211ENST00000564091 NOA1Q8NC60 698 aaKnown RBP15.19■□□□□ 0.02
CLN3-211ENST00000564091 COX4I2Q96KJ9 171 aa15.19■□□□□ 0.02
CLN3-211ENST00000564091 Q96MF0 132 aa15.19■□□□□ 0.02
CLN3-211ENST00000564091 PIP5K1AQ99755 562 aa15.19■□□□□ 0.02
CLN3-211ENST00000564091 SLC39A3Q9BRY0 314 aa15.19■□□□□ 0.02
CLN3-211ENST00000564091 TSPYL1Q9H0U9 437 aa15.19■□□□□ 0.02
CLN3-211ENST00000564091 STMN4Q9H169 189 aaPredicted RBP15.19■□□□□ 0.02
CLN3-211ENST00000564091 EXOC1LA0A1B0GW35 172 aa15.18■□□□□ 0.02
CLN3-211ENST00000564091 SHISA8B8ZZ34 492 aa15.18■□□□□ 0.02
CLN3-211ENST00000564091 C16orf97H3BN30 126 aa15.18■□□□□ 0.02
CLN3-211ENST00000564091 SMAD7O15105 426 aaKnown RBP15.18■□□□□ 0.02
CLN3-211ENST00000564091 EMC8O43402 210 aa15.18■□□□□ 0.02
CLN3-211ENST00000564091 GMFGO60234 142 aa15.18■□□□□ 0.02
CLN3-211ENST00000564091 URI1O94763 535 aaPredicted RBP15.18■□□□□ 0.02
CLN3-211ENST00000564091 ATP5F1P24539 256 aaPredicted RBP15.18■□□□□ 0.02
CLN3-211ENST00000564091 GCAP28676 217 aa15.18■□□□□ 0.02
CLN3-211ENST00000564091 PCYT1AP49585 367 aa15.18■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms