RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 DPY30Q9C005 99 aa12.24□□□□□ -0.45
CLK3-213ENST00000563842 UBQLN3Q9H347 655 aa12.24□□□□□ -0.45
CLK3-213ENST00000563842 VIPAS39Q9H9C1 493 aa12.24□□□□□ -0.45
CLK3-213ENST00000563842 EQTNQ9NQ60 294 aa12.24□□□□□ -0.45
CLK3-213ENST00000563842 ZCCHC3Q9NUD5 404 aaKnown RBP12.24□□□□□ -0.45
CLK3-213ENST00000563842 PNPOQ9NVS9 261 aa12.24□□□□□ -0.45
CLK3-213ENST00000563842 PCDHGB4Q9UN71 923 aa12.24□□□□□ -0.45
CLK3-213ENST00000563842 ABCG2Q9UNQ0 655 aa12.24□□□□□ -0.45
CLK3-213ENST00000563842 WIF1Q9Y5W5 379 aa12.24□□□□□ -0.45
CLK3-213ENST00000563842 UTP20O75691 2785 aaKnown RBP12.24□□□□□ -0.45
CLK3-213ENST00000563842 FAM47E-STBD1D6RA91 191 aa12.23□□□□□ -0.45
CLK3-213ENST00000563842 KLF11O14901 512 aa12.23□□□□□ -0.45
CLK3-213ENST00000563842 CFLARO15519 480 aa12.23□□□□□ -0.45
CLK3-213ENST00000563842 ZNHIT1O43257 154 aa12.23□□□□□ -0.45
CLK3-213ENST00000563842 NME6O75414 186 aaPredicted RBP12.23□□□□□ -0.45
CLK3-213ENST00000563842 NKX2-2O95096 273 aa12.23□□□□□ -0.45
CLK3-213ENST00000563842 IL33O95760 270 aa12.23□□□□□ -0.45
CLK3-213ENST00000563842 KRT16P08779 473 aa12.23□□□□□ -0.45
CLK3-213ENST00000563842 ALOX5P09917 674 aa12.23□□□□□ -0.45
CLK3-213ENST00000563842 ACVR2AP27037 513 aa12.23□□□□□ -0.45
CLK3-213ENST00000563842 PTPN6P29350 595 aa12.23□□□□□ -0.45
CLK3-213ENST00000563842 PTGER4P35408 488 aa12.23□□□□□ -0.45
CLK3-213ENST00000563842 PTGDSP41222 190 aa12.23□□□□□ -0.45
CLK3-213ENST00000563842 TRPC1P48995 793 aa12.23□□□□□ -0.45
CLK3-213ENST00000563842 CLNS1AP54105 237 aaKnown RBP12.23□□□□□ -0.45
CLK3-213ENST00000563842 ADORA2A-AS1P86434 159 aa12.23□□□□□ -0.45
CLK3-213ENST00000563842 DPY19L1Q2PZI1 675 aa12.23□□□□□ -0.45
CLK3-213ENST00000563842 PGS1Q32NB8 556 aa12.23□□□□□ -0.45
CLK3-213ENST00000563842 FNDC7Q5VTL7 733 aa12.23□□□□□ -0.45
CLK3-213ENST00000563842 DESI1Q6ICB0 168 aa12.23□□□□□ -0.45
CLK3-213ENST00000563842 OGFOD2Q6N063 350 aa12.23□□□□□ -0.45
CLK3-213ENST00000563842 ZNF585AQ6P3V2 769 aa12.23□□□□□ -0.45
CLK3-213ENST00000563842 SPATA19Q7Z5L4 167 aa12.23□□□□□ -0.45
CLK3-213ENST00000563842 PLCZ1Q86YW0 608 aa12.23□□□□□ -0.45
CLK3-213ENST00000563842 PM20D2Q8IYS1 436 aa12.23□□□□□ -0.45
CLK3-213ENST00000563842 OR4N2Q8NGD1 307 aa12.23□□□□□ -0.45
CLK3-213ENST00000563842 OR56A1Q8NGH5 318 aa12.23□□□□□ -0.45
CLK3-213ENST00000563842 PSMA8Q8TAA3 256 aa12.23□□□□□ -0.45
CLK3-213ENST00000563842 SLC9A6Q92581 669 aa12.23□□□□□ -0.45
CLK3-213ENST00000563842 RND1Q92730 232 aa12.23□□□□□ -0.45
CLK3-213ENST00000563842 HOXB13Q92826 284 aaPredicted RBP12.23□□□□□ -0.45
CLK3-213ENST00000563842 ARL8AQ96BM9 186 aa12.23□□□□□ -0.45
CLK3-213ENST00000563842 GALNT9Q9HCQ5 603 aa12.23□□□□□ -0.45
CLK3-213ENST00000563842 PNPLA3Q9NST1 481 aa12.23□□□□□ -0.45
CLK3-213ENST00000563842 SNX8Q9Y5X2 465 aa12.23□□□□□ -0.45
CLK3-213ENST00000563842 MED12Q93074 2177 aa12.23□□□□□ -0.45
CLK3-213ENST00000563842 GIMAP1-GIMAP5A0A087WTJ2 511 aa12.22□□□□□ -0.45
CLK3-213ENST00000563842 C15orf38-AP3S2A0A0A6YYH1 394 aa12.22□□□□□ -0.45
CLK3-213ENST00000563842 ADAM10O14672 748 aa12.22□□□□□ -0.45
CLK3-213ENST00000563842 CLDN14O95500 239 aa12.22□□□□□ -0.45
CLK3-213ENST00000563842 CYP4B1P13584 511 aa12.22□□□□□ -0.45
CLK3-213ENST00000563842 LCN1P31025 176 aa12.22□□□□□ -0.45
CLK3-213ENST00000563842 EVI2BP34910 448 aa12.22□□□□□ -0.45
CLK3-213ENST00000563842 MAP3K8P41279 467 aa12.22□□□□□ -0.45
CLK3-213ENST00000563842 CCT3P49368 545 aaKnown RBP12.22□□□□□ -0.45
CLK3-213ENST00000563842 DIO3P55073 304 aa12.22□□□□□ -0.45
CLK3-213ENST00000563842 OCRLQ01968 901 aa12.22□□□□□ -0.45
CLK3-213ENST00000563842 SPDYE7PQ495Y7 208 aa12.22□□□□□ -0.45
CLK3-213ENST00000563842 EMC4Q5J8M3 183 aa12.22□□□□□ -0.45
CLK3-213ENST00000563842 MFSD12Q6NUT3 480 aa12.22□□□□□ -0.45
CLK3-213ENST00000563842 B3GNT6Q6ZMB0 384 aa12.22□□□□□ -0.45
CLK3-213ENST00000563842 C3P1Q6ZMU1 363 aa12.22□□□□□ -0.45
CLK3-213ENST00000563842 KRTCAP2Q8N6L1 136 aa12.22□□□□□ -0.45
CLK3-213ENST00000563842 OR8J2Q8NGG1 315 aa12.22□□□□□ -0.45
CLK3-213ENST00000563842 OR5M9Q8NGP3 310 aa12.22□□□□□ -0.45
CLK3-213ENST00000563842 PIWIL2Q8TC59 973 aaKnown RBP12.22□□□□□ -0.45
CLK3-213ENST00000563842 SFXN5Q8TD22 340 aa12.22□□□□□ -0.45
CLK3-213ENST00000563842 RNF138Q8WVD3 245 aa12.22□□□□□ -0.45
CLK3-213ENST00000563842 ASB5Q8WWX0 329 aa12.22□□□□□ -0.45
CLK3-213ENST00000563842 FAM120BQ96EK7 910 aaKnown RBP12.22□□□□□ -0.45
CLK3-213ENST00000563842 GIMAP5Q96F15 307 aa12.22□□□□□ -0.45
CLK3-213ENST00000563842 STACQ99469 402 aa12.22□□□□□ -0.45
CLK3-213ENST00000563842 SLC6A15Q9H2J7 730 aa12.22□□□□□ -0.45
CLK3-213ENST00000563842 CHST11Q9NPF2 352 aa12.22□□□□□ -0.45
CLK3-213ENST00000563842 SIRT3Q9NTG7 399 aaPredicted RBP12.22□□□□□ -0.45
CLK3-213ENST00000563842 FAM120CQ9NX05 1096 aaKnown RBP12.22□□□□□ -0.45
CLK3-213ENST00000563842 GIN1Q9NXP7 522 aa12.22□□□□□ -0.45
CLK3-213ENST00000563842 FAF1Q9UNN5 650 aaPredicted RBP12.22□□□□□ -0.45
CLK3-213ENST00000563842 MRPS18CQ9Y3D5 142 aaKnown RBP12.22□□□□□ -0.45
CLK3-213ENST00000563842 CREBBPQ92793 2442 aa12.22□□□□□ -0.45
CLK3-213ENST00000563842 INTS1Q8N201 2190 aaKnown RBP12.22□□□□□ -0.45
CLK3-213ENST00000563842 PKDREJQ9NTG1 2253 aa12.21□□□□□ -0.45
CLK3-213ENST00000563842 C2orf72A6NCS6 295 aa12.21□□□□□ -0.45
CLK3-213ENST00000563842 AHRRA9YTQ3 701 aa12.21□□□□□ -0.45
CLK3-213ENST00000563842 HMGB1P1B2RPK0 211 aaPredicted RBP12.21□□□□□ -0.45
CLK3-213ENST00000563842 PRSS44E7EML9 344 aa12.21□□□□□ -0.45
CLK3-213ENST00000563842 RNASET2O00584 256 aaKnown RBP12.21□□□□□ -0.45
CLK3-213ENST00000563842 C6orf47O95873 294 aa12.21□□□□□ -0.45
CLK3-213ENST00000563842 ACTL6AO96019 429 aa12.21□□□□□ -0.45
CLK3-213ENST00000563842 HMGN2P05204 90 aaKnown RBP12.21□□□□□ -0.45
CLK3-213ENST00000563842 KITP10721 976 aa12.21□□□□□ -0.45
CLK3-213ENST00000563842 H2AFXP16104 143 aaPredicted RBP12.21□□□□□ -0.45
CLK3-213ENST00000563842 EFNA1P20827 205 aaPredicted RBP12.21□□□□□ -0.45
CLK3-213ENST00000563842 SRD5A2P31213 254 aa12.21□□□□□ -0.45
CLK3-213ENST00000563842 KIR3DL1P43629 444 aa12.21□□□□□ -0.45
CLK3-213ENST00000563842 RFX3P48380 749 aa12.21□□□□□ -0.45
CLK3-213ENST00000563842 TP53BP2Q13625 1128 aa12.21□□□□□ -0.45
CLK3-213ENST00000563842 NHSL2Q5HYW2 709 aa12.21□□□□□ -0.45
CLK3-213ENST00000563842 ANXA8L1Q5VT79 327 aa12.21□□□□□ -0.45
CLK3-213ENST00000563842 WDR53Q7Z5U6 358 aaPredicted RBP12.21□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms