RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 RNASET2O00584 256 aaKnown RBP8.57□□□□□ -1.04
LDLR-211ENST00000560173 SEMA7AO75326 666 aa8.57□□□□□ -1.04
LDLR-211ENST00000560173 NKX2-2O95096 273 aa8.57□□□□□ -1.04
LDLR-211ENST00000560173 SNX4O95219 450 aa8.57□□□□□ -1.04
LDLR-211ENST00000560173 HMGN2P05204 90 aaKnown RBP8.57□□□□□ -1.04
LDLR-211ENST00000560173 STSP08842 583 aa8.57□□□□□ -1.04
LDLR-211ENST00000560173 RFPL3SP0C7P2 107 aa8.57□□□□□ -1.04
LDLR-211ENST00000560173 CYP4B1P13584 511 aa8.57□□□□□ -1.04
LDLR-211ENST00000560173 IL12AP29459 219 aa8.57□□□□□ -1.04
LDLR-211ENST00000560173 IL12BP29460 328 aa8.57□□□□□ -1.04
LDLR-211ENST00000560173 GABRA3P34903 492 aa8.57□□□□□ -1.04
LDLR-211ENST00000560173 KRT20P35900 424 aa8.57□□□□□ -1.04
LDLR-211ENST00000560173 PTGDSP41222 190 aa8.57□□□□□ -1.04
LDLR-211ENST00000560173 CCT3P49368 545 aaKnown RBP8.57□□□□□ -1.04
LDLR-211ENST00000560173 PRIM2P49643 509 aa8.57□□□□□ -1.04
LDLR-211ENST00000560173 IDH3AP50213 366 aa8.57□□□□□ -1.04
LDLR-211ENST00000560173 PNLIPRP2P54317 469 aa8.57□□□□□ -1.04
LDLR-211ENST00000560173 HBA1P69905 142 aa8.57□□□□□ -1.04
LDLR-211ENST00000560173 MRPS22P82650 360 aaKnown RBP8.57□□□□□ -1.04
LDLR-211ENST00000560173 HSF1Q00613 529 aa8.57□□□□□ -1.04
LDLR-211ENST00000560173 SNTA1Q13424 505 aa8.57□□□□□ -1.04
LDLR-211ENST00000560173 GAB1Q13480 694 aa8.57□□□□□ -1.04
LDLR-211ENST00000560173 DUSP5Q16690 384 aa8.57□□□□□ -1.04
LDLR-211ENST00000560173 GSTA3Q16772 222 aa8.57□□□□□ -1.04
LDLR-211ENST00000560173 FAM174BQ3ZCQ3 159 aa8.57□□□□□ -1.04
LDLR-211ENST00000560173 SPDYE7PQ495Y7 208 aa8.57□□□□□ -1.04
LDLR-211ENST00000560173 VPS26BQ4G0F5 336 aa8.57□□□□□ -1.04
LDLR-211ENST00000560173 ANXA8L1Q5VT79 327 aa8.57□□□□□ -1.04
LDLR-211ENST00000560173 FNDC7Q5VTL7 733 aa8.57□□□□□ -1.04
LDLR-211ENST00000560173 FAM91A1Q658Y4 838 aa8.57□□□□□ -1.04
LDLR-211ENST00000560173 HIST2H2BCQ6DN03 193 aa8.57□□□□□ -1.04
LDLR-211ENST00000560173 CGB2Q6NT52 195 aa8.57□□□□□ -1.04
LDLR-211ENST00000560173 ZCCHC12Q6PEW1 402 aa8.57□□□□□ -1.04
LDLR-211ENST00000560173 FAM26EQ8N5C1 309 aa8.57□□□□□ -1.04
LDLR-211ENST00000560173 OR56A1Q8NGH5 318 aa8.57□□□□□ -1.04
LDLR-211ENST00000560173 OR52N2Q8NGI0 321 aa8.57□□□□□ -1.04
LDLR-211ENST00000560173 FBXO30Q8TB52 745 aa8.57□□□□□ -1.04
LDLR-211ENST00000560173 MOAP1Q96BY2 351 aa8.57□□□□□ -1.04
LDLR-211ENST00000560173 EFHD2Q96C19 240 aaPredicted RBP8.57□□□□□ -1.04
LDLR-211ENST00000560173 C16orf58Q96GQ5 468 aa8.57□□□□□ -1.04
LDLR-211ENST00000560173 TMEM41AQ96HV5 264 aa8.57□□□□□ -1.04
LDLR-211ENST00000560173 OSBPL11Q9BXB4 747 aa8.57□□□□□ -1.04
LDLR-211ENST00000560173 METTL7AQ9H8H3 244 aa8.57□□□□□ -1.04
LDLR-211ENST00000560173 TCF7L2Q9NQB0 619 aa8.57□□□□□ -1.04
LDLR-211ENST00000560173 SDR39U1Q9NRG7 319 aaPredicted RBP8.57□□□□□ -1.04
LDLR-211ENST00000560173 GPATCH2Q9NW75 528 aa8.57□□□□□ -1.04
LDLR-211ENST00000560173 FAM120CQ9NX05 1096 aaKnown RBP8.57□□□□□ -1.04
LDLR-211ENST00000560173 ZIM2Q9NZV7 527 aa8.57□□□□□ -1.04
LDLR-211ENST00000560173 CBLCQ9ULV8 474 aa8.57□□□□□ -1.04
LDLR-211ENST00000560173 ZNF835Q9Y2P0 537 aa8.57□□□□□ -1.04
LDLR-211ENST00000560173 SNX8Q9Y5X2 465 aa8.57□□□□□ -1.04
LDLR-211ENST00000560173 LRBAP50851 2863 aa8.56□□□□□ -1.04
LDLR-211ENST00000560173 NOTCH2Q04721 2471 aa8.56□□□□□ -1.04
LDLR-211ENST00000560173 PCNX1Q96RV3 2341 aa8.56□□□□□ -1.04
LDLR-211ENST00000560173 PRSS51A0A1B0GVH4 220 aa8.56□□□□□ -1.04
LDLR-211ENST00000560173 H0YHG0 523 aa8.56□□□□□ -1.04
LDLR-211ENST00000560173 ADAM10O14672 748 aa8.56□□□□□ -1.04
LDLR-211ENST00000560173 SNPHO15079 494 aa8.56□□□□□ -1.04
LDLR-211ENST00000560173 UBDO15205 165 aa8.56□□□□□ -1.04
LDLR-211ENST00000560173 CFLARO15519 480 aa8.56□□□□□ -1.04
LDLR-211ENST00000560173 ZNHIT1O43257 154 aa8.56□□□□□ -1.04
LDLR-211ENST00000560173 CDC40O60508 579 aaKnown RBP eCLIP8.56□□□□□ -1.04
LDLR-211ENST00000560173 SLC19A2O60779 497 aa8.56□□□□□ -1.04
LDLR-211ENST00000560173 ICOSLGO75144 302 aa8.56□□□□□ -1.04
LDLR-211ENST00000560173 IL33O95760 270 aa8.56□□□□□ -1.04
LDLR-211ENST00000560173 IGKV1D-16P01601 117 aa8.56□□□□□ -1.04
LDLR-211ENST00000560173 IGHG3P01860 377 aa8.56□□□□□ -1.04
LDLR-211ENST00000560173 CELA3AP09093 270 aa8.56□□□□□ -1.04
LDLR-211ENST00000560173 S100A3P33764 101 aa8.56□□□□□ -1.04
LDLR-211ENST00000560173 SOAT1P35610 550 aa8.56□□□□□ -1.04
LDLR-211ENST00000560173 MAGEA5P43359 124 aa8.56□□□□□ -1.04
LDLR-211ENST00000560173 DGKQP52824 942 aa8.56□□□□□ -1.04
LDLR-211ENST00000560173 AQP5P55064 265 aa8.56□□□□□ -1.04
LDLR-211ENST00000560173 RBPJQ06330 500 aa8.56□□□□□ -1.04
LDLR-211ENST00000560173 BNIP1Q12981 228 aa8.56□□□□□ -1.04
LDLR-211ENST00000560173 TP53BP2Q13625 1128 aa8.56□□□□□ -1.04
LDLR-211ENST00000560173 LASP1Q14847 261 aaKnown RBP8.56□□□□□ -1.04
LDLR-211ENST00000560173 DECR1Q16698 335 aa8.56□□□□□ -1.04
LDLR-211ENST00000560173 ZNF800Q2TB10 664 aaPredicted RBP eCLIP8.56□□□□□ -1.04
LDLR-211ENST00000560173 C1QL3Q5VWW1 255 aa8.56□□□□□ -1.04
LDLR-211ENST00000560173 METTL21CQ5VZV1 264 aa8.56□□□□□ -1.04
LDLR-211ENST00000560173 TIGD3Q6B0B8 471 aa8.56□□□□□ -1.04
LDLR-211ENST00000560173 SLC30A6Q6NXT4 461 aa8.56□□□□□ -1.04
LDLR-211ENST00000560173 Q6ZPB1 254 aaPredicted RBP8.56□□□□□ -1.04
LDLR-211ENST00000560173 ACAD11Q709F0 780 aa8.56□□□□□ -1.04
LDLR-211ENST00000560173 PACS2Q86VP3 889 aa8.56□□□□□ -1.04
LDLR-211ENST00000560173 ANKRD46Q86W74 232 aa8.56□□□□□ -1.04
LDLR-211ENST00000560173 GLB1L3Q8NCI6 653 aaPredicted RBP8.56□□□□□ -1.04
LDLR-211ENST00000560173 SLC16A11Q8NCK7 471 aa8.56□□□□□ -1.04
LDLR-211ENST00000560173 OR4A15Q8NGL6 344 aa8.56□□□□□ -1.04
LDLR-211ENST00000560173 OR5AK3PQ8NH89 298 aa8.56□□□□□ -1.04
LDLR-211ENST00000560173 GPR151Q8TDV0 419 aa8.56□□□□□ -1.04
LDLR-211ENST00000560173 PIK3R3Q92569 461 aa8.56□□□□□ -1.04
LDLR-211ENST00000560173 SLC9A6Q92581 669 aa8.56□□□□□ -1.04
LDLR-211ENST00000560173 TMCO6Q96DC7 493 aa8.56□□□□□ -1.04
LDLR-211ENST00000560173 OTUB1Q96FW1 271 aaPredicted RBP8.56□□□□□ -1.04
LDLR-211ENST00000560173 RMND5BQ96G75 393 aaPredicted RBP8.56□□□□□ -1.04
LDLR-211ENST00000560173 JSRP1Q96MG2 331 aaPredicted RBP8.56□□□□□ -1.04
LDLR-211ENST00000560173 CCDC115Q96NT0 180 aa8.56□□□□□ -1.04
LDLR-211ENST00000560173 ZBTB18Q99592 522 aa8.56□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms