RNA–Protein interactions for RNA: ENST00000559933.1

SPG11-220, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 2

Gene SPG11, Length 518 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-220ENST00000559933 IRX1P78414 480 aaPredicted RBP4.83□□□□□ -1.64
SPG11-220ENST00000559933 MS4A2Q01362 244 aa4.83□□□□□ -1.64
SPG11-220ENST00000559933 Q0VFX4 171 aa4.83□□□□□ -1.64
SPG11-220ENST00000559933 RAPSNQ13702 412 aa4.83□□□□□ -1.64
SPG11-220ENST00000559933 PUM1Q14671 1186 aaKnown RBP eCLIP4.83□□□□□ -1.64
SPG11-220ENST00000559933 RTP5Q14D33 572 aa4.83□□□□□ -1.64
SPG11-220ENST00000559933 RGNQ15493 299 aa4.83□□□□□ -1.64
SPG11-220ENST00000559933 MAPK11Q15759 364 aa4.83□□□□□ -1.64
SPG11-220ENST00000559933 ADRM1Q16186 407 aa4.83□□□□□ -1.64
SPG11-220ENST00000559933 SYPL1Q16563 259 aa4.83□□□□□ -1.64
SPG11-220ENST00000559933 DUSP5Q16690 384 aa4.83□□□□□ -1.64
SPG11-220ENST00000559933 TBC1D25Q3MII6 688 aa4.83□□□□□ -1.64
SPG11-220ENST00000559933 COQ5Q5HYK3 327 aa4.83□□□□□ -1.64
SPG11-220ENST00000559933 MFSD12Q6NUT3 480 aa4.83□□□□□ -1.64
SPG11-220ENST00000559933 TMEM205Q6UW68 189 aa4.83□□□□□ -1.64
SPG11-220ENST00000559933 KIRREL2Q6UWL6 708 aa4.83□□□□□ -1.64
SPG11-220ENST00000559933 C16orf89Q6UX73 402 aa4.83□□□□□ -1.64
SPG11-220ENST00000559933 HACD2Q6Y1H2 254 aa4.83□□□□□ -1.64
SPG11-220ENST00000559933 MSANTD1Q6ZTZ1 278 aa4.83□□□□□ -1.64
SPG11-220ENST00000559933 CPEB2Q7Z5Q1 589 aaKnown RBP4.83□□□□□ -1.64
SPG11-220ENST00000559933 MRGPREQ86SM8 312 aa4.83□□□□□ -1.64
SPG11-220ENST00000559933 PTOV1Q86YD1 416 aa4.83□□□□□ -1.64
SPG11-220ENST00000559933 HOMEZQ8IX15 550 aa4.83□□□□□ -1.64
SPG11-220ENST00000559933 ZZZ3Q8IYH5 903 aa4.83□□□□□ -1.64
SPG11-220ENST00000559933 OR2L13Q8N349 312 aa4.83□□□□□ -1.64
SPG11-220ENST00000559933 ESX1Q8N693 406 aa4.83□□□□□ -1.64
SPG11-220ENST00000559933 ZNF615Q8N8J6 731 aa4.83□□□□□ -1.64
SPG11-220ENST00000559933 ANKFN1Q8N957 763 aa4.83□□□□□ -1.64
SPG11-220ENST00000559933 PCYOX1LQ8NBM8 494 aa4.83□□□□□ -1.64
SPG11-220ENST00000559933 HIPK4Q8NE63 616 aa4.83□□□□□ -1.64
SPG11-220ENST00000559933 PLPP5Q8NEB5 264 aa4.83□□□□□ -1.64
SPG11-220ENST00000559933 NFAM1Q8NET5 270 aaPredicted RBP4.83□□□□□ -1.64
SPG11-220ENST00000559933 VPS37AQ8NEZ2 397 aa4.83□□□□□ -1.64
SPG11-220ENST00000559933 OR52N2Q8NGI0 321 aa4.83□□□□□ -1.64
SPG11-220ENST00000559933 C16orf52Q8NHV5 167 aa4.83□□□□□ -1.64
SPG11-220ENST00000559933 NFKBIDQ8NI38 313 aa4.83□□□□□ -1.64
SPG11-220ENST00000559933 PSMA8Q8TAA3 256 aa4.83□□□□□ -1.64
SPG11-220ENST00000559933 ZNF675Q8TD23 568 aa4.83□□□□□ -1.64
SPG11-220ENST00000559933 ZNF721Q8TF20 911 aa4.83□□□□□ -1.64
SPG11-220ENST00000559933 TSPEARQ8WU66 669 aa4.83□□□□□ -1.64
SPG11-220ENST00000559933 PIK3R3Q92569 461 aa4.83□□□□□ -1.64
SPG11-220ENST00000559933 SLC9A6Q92581 669 aa4.83□□□□□ -1.64
SPG11-220ENST00000559933 CDS1Q92903 461 aa4.83□□□□□ -1.64
SPG11-220ENST00000559933 RIT1Q92963 219 aa4.83□□□□□ -1.64
SPG11-220ENST00000559933 ROPN1LQ96C74 230 aa4.83□□□□□ -1.64
SPG11-220ENST00000559933 CTHRC1Q96CG8 243 aa4.83□□□□□ -1.64
SPG11-220ENST00000559933 NXPE2Q96DL1 559 aa4.83□□□□□ -1.64
SPG11-220ENST00000559933 NEURL3Q96EH8 262 aa4.83□□□□□ -1.64
SPG11-220ENST00000559933 SENP5Q96HI0 755 aaPredicted RBP4.83□□□□□ -1.64
SPG11-220ENST00000559933 MS4A4EQ96PG1 132 aa4.83□□□□□ -1.64
SPG11-220ENST00000559933 OR7D2Q96RA2 312 aa4.83□□□□□ -1.64
SPG11-220ENST00000559933 GAL3ST4Q96RP7 486 aa4.83□□□□□ -1.64
SPG11-220ENST00000559933 QRSL1Q9H0R6 528 aaKnown RBP4.83□□□□□ -1.64
SPG11-220ENST00000559933 KAT8Q9H7Z6 458 aaKnown RBP4.83□□□□□ -1.64
SPG11-220ENST00000559933 WDR54Q9H977 334 aa4.83□□□□□ -1.64
SPG11-220ENST00000559933 GPN2Q9H9Y4 310 aaPredicted RBP4.83□□□□□ -1.64
SPG11-220ENST00000559933 FOLH1BQ9HBA9 442 aa4.83□□□□□ -1.64
SPG11-220ENST00000559933 ZNF160Q9HCG1 818 aa4.83□□□□□ -1.64
SPG11-220ENST00000559933 SPAG4Q9NPE6 437 aa4.83□□□□□ -1.64
SPG11-220ENST00000559933 THSD1Q9NS62 852 aa4.83□□□□□ -1.64
SPG11-220ENST00000559933 SDAD1Q9NVU7 687 aaKnown RBP eCLIP4.83□□□□□ -1.64
SPG11-220ENST00000559933 TMEM45AQ9NWC5 275 aa4.83□□□□□ -1.64
SPG11-220ENST00000559933 FBXO34Q9NWN3 711 aa4.83□□□□□ -1.64
SPG11-220ENST00000559933 GID8Q9NWU2 228 aa4.83□□□□□ -1.64
SPG11-220ENST00000559933 GIN1Q9NXP7 522 aa4.83□□□□□ -1.64
SPG11-220ENST00000559933 FLRT3Q9NZU0 649 aa4.83□□□□□ -1.64
SPG11-220ENST00000559933 TMEM181Q9P2C4 612 aa4.83□□□□□ -1.64
SPG11-220ENST00000559933 ABCD2Q9UBJ2 740 aa4.83□□□□□ -1.64
SPG11-220ENST00000559933 SLC7A8Q9UHI5 535 aa4.83□□□□□ -1.64
SPG11-220ENST00000559933 ZNF639Q9UID6 485 aa4.83□□□□□ -1.64
SPG11-220ENST00000559933 FBXL4Q9UKA2 621 aa4.83□□□□□ -1.64
SPG11-220ENST00000559933 PSME2Q9UL46 239 aa4.83□□□□□ -1.64
SPG11-220ENST00000559933 PCDHGB4Q9UN71 923 aa4.83□□□□□ -1.64
SPG11-220ENST00000559933 FARSAQ9Y285 508 aaKnown RBP4.83□□□□□ -1.64
SPG11-220ENST00000559933 WBP11Q9Y2W2 641 aaKnown RBP4.83□□□□□ -1.64
SPG11-220ENST00000559933 HEMK1Q9Y5R4 338 aaPredicted RBP4.83□□□□□ -1.64
SPG11-220ENST00000559933 EPG5Q9HCE0 2579 aa4.83□□□□□ -1.64
SPG11-220ENST00000559933 FASNP49327 2511 aaKnown RBP4.82□□□□□ -1.64
SPG11-220ENST00000559933 SHISA3A0PJX4 238 aa4.82□□□□□ -1.64
SPG11-220ENST00000559933 DYTNA2CJ06 578 aa4.82□□□□□ -1.64
SPG11-220ENST00000559933 TMEM200CA6NKL6 621 aa4.82□□□□□ -1.64
SPG11-220ENST00000559933 FAM220BPB1ANY3 271 aa4.82□□□□□ -1.64
SPG11-220ENST00000559933 WWP2O00308 870 aa4.82□□□□□ -1.64
SPG11-220ENST00000559933 PLOD2O00469 737 aa4.82□□□□□ -1.64
SPG11-220ENST00000559933 HMGN4O00479 90 aa4.82□□□□□ -1.64
SPG11-220ENST00000559933 PLOD3O60568 738 aa4.82□□□□□ -1.64
SPG11-220ENST00000559933 BCAS1O75363 584 aaPredicted RBP4.82□□□□□ -1.64
SPG11-220ENST00000559933 ERN1O75460 977 aaKnown RBP4.82□□□□□ -1.64
SPG11-220ENST00000559933 GCM2O75603 506 aaPredicted RBP4.82□□□□□ -1.64
SPG11-220ENST00000559933 DNAJB5O75953 348 aa4.82□□□□□ -1.64
SPG11-220ENST00000559933 F10P00742 488 aa4.82□□□□□ -1.64
SPG11-220ENST00000559933 IGKV3-11P04433 115 aa4.82□□□□□ -1.64
SPG11-220ENST00000559933 CHRM4P08173 479 aa4.82□□□□□ -1.64
SPG11-220ENST00000559933 RAB40ALP0C0E4 278 aa4.82□□□□□ -1.64
SPG11-220ENST00000559933 C1QTNF9P0C862 333 aa4.82□□□□□ -1.64
SPG11-220ENST00000559933 ZCCHC18P0CG32 403 aa4.82□□□□□ -1.64
SPG11-220ENST00000559933 LIPCP11150 499 aa4.82□□□□□ -1.64
SPG11-220ENST00000559933 ITGAMP11215 1152 aa4.82□□□□□ -1.64
SPG11-220ENST00000559933 NQO1P15559 274 aaKnown RBP4.82□□□□□ -1.64
SPG11-220ENST00000559933 TNFRSF1BP20333 461 aa4.82□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 72.9 ms