RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 GSAPA4D1B5 854 aa1.31□□□□□ -2.2
USP3-209ENST00000558925 MFSD2BA6NFX1 497 aa1.31□□□□□ -2.2
USP3-209ENST00000558925 FOXI3A8MTJ6 420 aaPredicted RBP1.31□□□□□ -2.2
USP3-209ENST00000558925 RNF212BA8MTL3 300 aa1.31□□□□□ -2.2
USP3-209ENST00000558925 A8MUI8 341 aa1.31□□□□□ -2.2
USP3-209ENST00000558925 H3BTX0 84 aa1.31□□□□□ -2.2
USP3-209ENST00000558925 H7C423 109 aa1.31□□□□□ -2.2
USP3-209ENST00000558925 PDLIM1O00151 329 aa1.31□□□□□ -2.2
USP3-209ENST00000558925 SAP18O00422 153 aaKnown RBP1.31□□□□□ -2.2
USP3-209ENST00000558925 MCF2LO15068 1137 aa1.31□□□□□ -2.2
USP3-209ENST00000558925 CTAGE5O15320 804 aa1.31□□□□□ -2.2
USP3-209ENST00000558925 TM9SF1O15321 606 aa1.31□□□□□ -2.2
USP3-209ENST00000558925 PHF1O43189 567 aaPredicted RBP1.31□□□□□ -2.2
USP3-209ENST00000558925 ZSCAN12O43309 604 aa1.31□□□□□ -2.2
USP3-209ENST00000558925 PPIHO43447 177 aaKnown RBP1.31□□□□□ -2.2
USP3-209ENST00000558925 DCXO43602 365 aa1.31□□□□□ -2.2
USP3-209ENST00000558925 OR1F1O43749 312 aa1.31□□□□□ -2.2
USP3-209ENST00000558925 GMFGO60234 142 aa1.31□□□□□ -2.2
USP3-209ENST00000558925 JAK2O60674 1132 aa1.31□□□□□ -2.2
USP3-209ENST00000558925 SPAG6O75602 509 aa1.31□□□□□ -2.2
USP3-209ENST00000558925 B3GAT3O94766 335 aa1.31□□□□□ -2.2
USP3-209ENST00000558925 MT-ND1P03886 318 aa1.31□□□□□ -2.2
USP3-209ENST00000558925 IGF1P05019 195 aa1.31□□□□□ -2.2
USP3-209ENST00000558925 KRT8P05787 483 aa1.31□□□□□ -2.2
USP3-209ENST00000558925 MELTFP08582 738 aa1.31□□□□□ -2.2
USP3-209ENST00000558925 IGFBP1P08833 259 aaPredicted RBP1.31□□□□□ -2.2
USP3-209ENST00000558925 HOXB7P09629 217 aa1.31□□□□□ -2.2
USP3-209ENST00000558925 ALPIP09923 528 aa1.31□□□□□ -2.2
USP3-209ENST00000558925 DPEP1P16444 411 aa1.31□□□□□ -2.2
USP3-209ENST00000558925 HNF1AP20823 631 aa1.31□□□□□ -2.2
USP3-209ENST00000558925 AXLP30530 894 aa1.31□□□□□ -2.2
USP3-209ENST00000558925 RPL4P36578 427 aaKnown RBP1.31□□□□□ -2.2
USP3-209ENST00000558925 TAGLN2P37802 199 aaKnown RBP1.31□□□□□ -2.2
USP3-209ENST00000558925 PTGER3P43115 390 aa1.31□□□□□ -2.2
USP3-209ENST00000558925 BDKRB1P46663 353 aa1.31□□□□□ -2.2
USP3-209ENST00000558925 PRELPP51888 382 aa1.31□□□□□ -2.2
USP3-209ENST00000558925 GBX2P52951 348 aaPredicted RBP1.31□□□□□ -2.2
USP3-209ENST00000558925 NAPAP54920 295 aa1.31□□□□□ -2.2
USP3-209ENST00000558925 RPS6P62753 249 aaKnown RBP1.31□□□□□ -2.2
USP3-209ENST00000558925 EWSR1Q01844 656 aaKnown RBP eCLIP1.31□□□□□ -2.2
USP3-209ENST00000558925 PLOD1Q02809 727 aaPredicted RBP1.31□□□□□ -2.2
USP3-209ENST00000558925 ACY1Q03154 408 aa1.31□□□□□ -2.2
USP3-209ENST00000558925 PAX8Q06710 450 aa1.31□□□□□ -2.2
USP3-209ENST00000558925 BNIP1Q12981 228 aa1.31□□□□□ -2.2
USP3-209ENST00000558925 PEX6Q13608 980 aa1.31□□□□□ -2.2
USP3-209ENST00000558925 EIF2B1Q14232 305 aaKnown RBP1.31□□□□□ -2.2
USP3-209ENST00000558925 SELPLGQ14242 412 aa1.31□□□□□ -2.2
USP3-209ENST00000558925 RAB35Q15286 201 aa1.31□□□□□ -2.2
USP3-209ENST00000558925 ZIC1Q15915 447 aa1.31□□□□□ -2.2
USP3-209ENST00000558925 C17orf58Q2M2W7 97 aa1.31□□□□□ -2.2
USP3-209ENST00000558925 DCAF4L1Q3SXM0 396 aa1.31□□□□□ -2.2
USP3-209ENST00000558925 GGTA1PQ4G0N0 100 aa1.31□□□□□ -2.2
USP3-209ENST00000558925 C14orf28Q4W4Y0 310 aa1.31□□□□□ -2.2
USP3-209ENST00000558925 MS4A13Q5J8X5 152 aa1.31□□□□□ -2.2
USP3-209ENST00000558925 CELF3Q5SZQ8 465 aaKnown RBP1.31□□□□□ -2.2
USP3-209ENST00000558925 C9orf66Q5T8R8 295 aa1.31□□□□□ -2.2
USP3-209ENST00000558925 ATF7IP2Q5U623 682 aa1.31□□□□□ -2.2
USP3-209ENST00000558925 TAF3Q5VWG9 929 aa1.31□□□□□ -2.2
USP3-209ENST00000558925 ADAM5Q6NVV9 412 aa1.31□□□□□ -2.2
USP3-209ENST00000558925 ARMCX5Q6P1M9 558 aa1.31□□□□□ -2.2
USP3-209ENST00000558925 LRRC8BQ6P9F7 803 aa1.31□□□□□ -2.2
USP3-209ENST00000558925 EMBQ6PCB8 327 aa1.31□□□□□ -2.2
USP3-209ENST00000558925 ZNF613Q6PF04 617 aa1.31□□□□□ -2.2
USP3-209ENST00000558925 KCNIP4Q6PIL6 250 aa1.31□□□□□ -2.2
USP3-209ENST00000558925 BLOC1S2Q6QNY1 142 aa1.31□□□□□ -2.2
USP3-209ENST00000558925 PAQR6Q6TCH4 344 aa1.31□□□□□ -2.2
USP3-209ENST00000558925 KDELC1Q6UW63 502 aa1.31□□□□□ -2.2
USP3-209ENST00000558925 CENPUQ71F23 418 aa1.31□□□□□ -2.2
USP3-209ENST00000558925 HSD11B1LQ7Z5J1 315 aa1.31□□□□□ -2.2
USP3-209ENST00000558925 VASH2Q86V25 355 aa1.31□□□□□ -2.2
USP3-209ENST00000558925 PARGQ86W56 976 aa1.31□□□□□ -2.2
USP3-209ENST00000558925 ABHD12Q8N2K0 398 aa1.31□□□□□ -2.2
USP3-209ENST00000558925 DENND6BQ8NEG7 585 aa1.31□□□□□ -2.2
USP3-209ENST00000558925 OR2T33Q8NG76 320 aa1.31□□□□□ -2.2
USP3-209ENST00000558925 OR5AU1Q8NGC0 362 aa1.31□□□□□ -2.2
USP3-209ENST00000558925 OR5L2Q8NGL0 311 aa1.31□□□□□ -2.2
USP3-209ENST00000558925 OR6T1Q8NGN1 323 aa1.31□□□□□ -2.2
USP3-209ENST00000558925 OR8J1Q8NGP2 316 aa1.31□□□□□ -2.2
USP3-209ENST00000558925 RFESDQ8TAC1 157 aa1.31□□□□□ -2.2
USP3-209ENST00000558925 SLC5A11Q8WWX8 675 aa1.31□□□□□ -2.2
USP3-209ENST00000558925 ZNF606Q8WXB4 792 aa1.31□□□□□ -2.2
USP3-209ENST00000558925 CRYGNQ8WXF5 182 aa1.31□□□□□ -2.2
USP3-209ENST00000558925 CTNNBL1Q8WYA6 563 aaPredicted RBP1.31□□□□□ -2.2
USP3-209ENST00000558925 TADA1Q96BN2 335 aa1.31□□□□□ -2.2
USP3-209ENST00000558925 PIWIL1Q96J94 861 aaKnown RBP1.31□□□□□ -2.2
USP3-209ENST00000558925 SLC45A3Q96JT2 553 aa1.31□□□□□ -2.2
USP3-209ENST00000558925 AGAP3Q96P47 875 aa1.31□□□□□ -2.2
USP3-209ENST00000558925 VGLL1Q99990 258 aa1.31□□□□□ -2.2
USP3-209ENST00000558925 FAM173AQ9BQD7 235 aa1.31□□□□□ -2.2
USP3-209ENST00000558925 LRRC61Q9BV99 259 aa1.31□□□□□ -2.2
USP3-209ENST00000558925 TM2D1Q9BX74 207 aa1.31□□□□□ -2.2
USP3-209ENST00000558925 MAGT1Q9H0U3 335 aa1.31□□□□□ -2.2
USP3-209ENST00000558925 SLC25A51Q9H1U9 297 aa1.31□□□□□ -2.2
USP3-209ENST00000558925 IKZF5Q9H5V7 419 aa1.31□□□□□ -2.2
USP3-209ENST00000558925 JPT2Q9H910 190 aa1.31□□□□□ -2.2
USP3-209ENST00000558925 SP140LQ9H930 580 aa1.31□□□□□ -2.2
USP3-209ENST00000558925 GNB4Q9HAV0 340 aa1.31□□□□□ -2.2
USP3-209ENST00000558925 ELOVL3Q9HB03 270 aa1.31□□□□□ -2.2
USP3-209ENST00000558925 ELL3Q9HB65 397 aaPredicted RBP1.31□□□□□ -2.2
USP3-209ENST00000558925 LPAR2Q9HBW0 351 aa1.31□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms