RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 TMEM251Q8N6I4 163 aa12.45□□□□□ -0.42
SHMT2-228ENST00000557302 TRIML2Q8N7C3 387 aa12.45□□□□□ -0.42
SHMT2-228ENST00000557302 GOT1L1Q8NHS2 421 aaPredicted RBP12.45□□□□□ -0.42
SHMT2-228ENST00000557302 ADAMTS15Q8TE58 950 aa12.45□□□□□ -0.42
SHMT2-228ENST00000557302 OTUB1Q96FW1 271 aaPredicted RBP12.45□□□□□ -0.42
SHMT2-228ENST00000557302 PANX1Q96RD7 426 aa12.45□□□□□ -0.42
SHMT2-228ENST00000557302 RMND5AQ9H871 391 aa12.45□□□□□ -0.42
SHMT2-228ENST00000557302 DUSP22Q9NRW4 184 aa12.45□□□□□ -0.42
SHMT2-228ENST00000557302 GIN1Q9NXP7 522 aa12.45□□□□□ -0.42
SHMT2-228ENST00000557302 B4GALT7Q9UBV7 327 aa12.45□□□□□ -0.42
SHMT2-228ENST00000557302 TRIM33Q9UPN9 1127 aa12.45□□□□□ -0.42
SHMT2-228ENST00000557302 ESPL1Q14674 2120 aa12.44□□□□□ -0.42
SHMT2-228ENST00000557302 CCDC154A6NI56 674 aa12.44□□□□□ -0.42
SHMT2-228ENST00000557302 LRRC3CA6NJW4 275 aa12.44□□□□□ -0.42
SHMT2-228ENST00000557302 ICOSLGO75144 302 aa12.44□□□□□ -0.42
SHMT2-228ENST00000557302 WISP2O76076 250 aa12.44□□□□□ -0.42
SHMT2-228ENST00000557302 ZIC2O95409 532 aaPredicted RBP12.44□□□□□ -0.42
SHMT2-228ENST00000557302 NCF2P19878 526 aaPredicted RBP12.44□□□□□ -0.42
SHMT2-228ENST00000557302 CHI3L1P36222 383 aaPredicted RBP12.44□□□□□ -0.42
SHMT2-228ENST00000557302 MAGEA5P43359 124 aa12.44□□□□□ -0.42
SHMT2-228ENST00000557302 ZFP36L2P47974 494 aaKnown RBP12.44□□□□□ -0.42
SHMT2-228ENST00000557302 KCNK10P57789 538 aa12.44□□□□□ -0.42
SHMT2-228ENST00000557302 POU6F2P78424 691 aaPredicted RBP12.44□□□□□ -0.42
SHMT2-228ENST00000557302 RBPJQ06330 500 aa12.44□□□□□ -0.42
SHMT2-228ENST00000557302 SQLEQ14534 574 aa12.44□□□□□ -0.42
SHMT2-228ENST00000557302 EIF2S3LQ2VIR3 472 aaKnown RBP12.44□□□□□ -0.42
SHMT2-228ENST00000557302 CMPK2Q5EBM0 449 aa12.44□□□□□ -0.42
SHMT2-228ENST00000557302 CLEC4FQ8N1N0 589 aa12.44□□□□□ -0.42
SHMT2-228ENST00000557302 GHDCQ8N2G8 530 aa12.44□□□□□ -0.42
SHMT2-228ENST00000557302 FAM109AQ8N4B1 249 aa12.44□□□□□ -0.42
SHMT2-228ENST00000557302 OR52N2Q8NGI0 321 aa12.44□□□□□ -0.42
SHMT2-228ENST00000557302 CDS1Q92903 461 aa12.44□□□□□ -0.42
SHMT2-228ENST00000557302 TMEM41AQ96HV5 264 aa12.44□□□□□ -0.42
SHMT2-228ENST00000557302 SLC35G5Q96KT7 338 aa12.44□□□□□ -0.42
SHMT2-228ENST00000557302 BTBD2Q9BX70 525 aa12.44□□□□□ -0.42
SHMT2-228ENST00000557302 TMEM120AQ9BXJ8 343 aa12.44□□□□□ -0.42
SHMT2-228ENST00000557302 PIGUQ9H490 435 aa12.44□□□□□ -0.42
SHMT2-228ENST00000557302 RABEP2Q9H5N1 569 aa12.44□□□□□ -0.42
SHMT2-228ENST00000557302 ZDHHC11Q9H8X9 412 aa12.44□□□□□ -0.42
SHMT2-228ENST00000557302 GALNT9Q9HCQ5 603 aa12.44□□□□□ -0.42
SHMT2-228ENST00000557302 TMEM45AQ9NWC5 275 aa12.44□□□□□ -0.42
SHMT2-228ENST00000557302 ABCG2Q9UNQ0 655 aa12.44□□□□□ -0.42
SHMT2-228ENST00000557302 PCDHGB3Q9Y5G1 929 aa12.44□□□□□ -0.42
SHMT2-228ENST00000557302 NUP214P35658 2090 aaPredicted RBP12.44□□□□□ -0.42
SHMT2-228ENST00000557302 FLNCQ14315 2725 aa12.44□□□□□ -0.42
SHMT2-228ENST00000557302 DUXAA6NLW8 204 aa12.43□□□□□ -0.42
SHMT2-228ENST00000557302 RFXANKO14593 260 aa12.43□□□□□ -0.42
SHMT2-228ENST00000557302 GNB5O14775 395 aa12.43□□□□□ -0.42
SHMT2-228ENST00000557302 CDC40O60508 579 aaKnown RBP eCLIP12.43□□□□□ -0.42
SHMT2-228ENST00000557302 KCNK2O95069 426 aa12.43□□□□□ -0.42
SHMT2-228ENST00000557302 IGKV1D-16P01601 117 aa12.43□□□□□ -0.42
SHMT2-228ENST00000557302 MATN1P21941 496 aa12.43□□□□□ -0.42
SHMT2-228ENST00000557302 ELAVL4P26378 380 aaKnown RBP12.43□□□□□ -0.42
SHMT2-228ENST00000557302 EVI2BP34910 448 aa12.43□□□□□ -0.42
SHMT2-228ENST00000557302 PTGDSP41222 190 aa12.43□□□□□ -0.42
SHMT2-228ENST00000557302 MAN2A2P49641 1150 aa12.43□□□□□ -0.42
SHMT2-228ENST00000557302 ARFIP2P53365 341 aa12.43□□□□□ -0.42
SHMT2-228ENST00000557302 RPS26P62854 115 aaKnown RBP12.43□□□□□ -0.42
SHMT2-228ENST00000557302 RCAN2Q14206 197 aa12.43□□□□□ -0.42
SHMT2-228ENST00000557302 CPEB4Q17RY0 729 aaKnown RBP eCLIP12.43□□□□□ -0.42
SHMT2-228ENST00000557302 METTL21CQ5VZV1 264 aa12.43□□□□□ -0.42
SHMT2-228ENST00000557302 CGB2Q6NT52 195 aa12.43□□□□□ -0.42
SHMT2-228ENST00000557302 FIGNL1Q6PIW4 674 aa12.43□□□□□ -0.42
SHMT2-228ENST00000557302 ANGPTL8Q6UXH0 198 aa12.43□□□□□ -0.42
SHMT2-228ENST00000557302 ZNF621Q6ZSS3 439 aa12.43□□□□□ -0.42
SHMT2-228ENST00000557302 GALNT10Q86SR1 603 aa12.43□□□□□ -0.42
SHMT2-228ENST00000557302 PRR7Q8TB68 274 aa12.43□□□□□ -0.42
SHMT2-228ENST00000557302 FAM110BQ8TC76 370 aa12.43□□□□□ -0.42
SHMT2-228ENST00000557302 RNF138Q8WVD3 245 aa12.43□□□□□ -0.42
SHMT2-228ENST00000557302 VPS33AQ96AX1 596 aa12.43□□□□□ -0.42
SHMT2-228ENST00000557302 NTNG2Q96CW9 530 aa12.43□□□□□ -0.42
SHMT2-228ENST00000557302 NEURL3Q96EH8 262 aa12.43□□□□□ -0.42
SHMT2-228ENST00000557302 ITCHQ96J02 903 aa12.43□□□□□ -0.42
SHMT2-228ENST00000557302 OR7D2Q96RA2 312 aa12.43□□□□□ -0.42
SHMT2-228ENST00000557302 SLC35A5Q9BS91 424 aa12.43□□□□□ -0.42
SHMT2-228ENST00000557302 INPP5KQ9BT40 448 aa12.43□□□□□ -0.42
SHMT2-228ENST00000557302 G6PC3Q9BUM1 346 aa12.43□□□□□ -0.42
SHMT2-228ENST00000557302 DEFB127Q9H1M4 99 aa12.43□□□□□ -0.42
SHMT2-228ENST00000557302 ZNF703Q9H7S9 590 aaPredicted RBP12.43□□□□□ -0.42
SHMT2-228ENST00000557302 SERHLQ9NQF3 203 aa12.43□□□□□ -0.42
SHMT2-228ENST00000557302 OSGIN2Q9Y236 505 aa12.43□□□□□ -0.42
SHMT2-228ENST00000557302 WIF1Q9Y5W5 379 aa12.43□□□□□ -0.42
SHMT2-228ENST00000557302 EXPH5Q8NEV8 1989 aa12.43□□□□□ -0.42
SHMT2-228ENST00000557302 C2orf72A6NCS6 295 aa12.42□□□□□ -0.42
SHMT2-228ENST00000557302 NR5A2O00482 541 aa12.42□□□□□ -0.42
SHMT2-228ENST00000557302 SNPHO15079 494 aa12.42□□□□□ -0.42
SHMT2-228ENST00000557302 SCO2O43819 266 aa12.42□□□□□ -0.42
SHMT2-228ENST00000557302 FADS1O60427 444 aa12.42□□□□□ -0.42
SHMT2-228ENST00000557302 UTS2O95399 124 aa12.42□□□□□ -0.42
SHMT2-228ENST00000557302 ANP32DO95626 131 aa12.42□□□□□ -0.42
SHMT2-228ENST00000557302 GSNP06396 782 aa12.42□□□□□ -0.42
SHMT2-228ENST00000557302 RFPL3SP0C7P2 107 aa12.42□□□□□ -0.42
SHMT2-228ENST00000557302 GDF1P27539 372 aa12.42□□□□□ -0.42
SHMT2-228ENST00000557302 LCN1P31025 176 aa12.42□□□□□ -0.42
SHMT2-228ENST00000557302 CDKN2CP42773 168 aa12.42□□□□□ -0.42
SHMT2-228ENST00000557302 CLK3P49761 638 aaKnown RBP12.42□□□□□ -0.42
SHMT2-228ENST00000557302 HSF1Q00613 529 aa12.42□□□□□ -0.42
SHMT2-228ENST00000557302 SF3A3Q12874 501 aaKnown RBP eCLIP12.42□□□□□ -0.42
SHMT2-228ENST00000557302 SLC10A1Q14973 349 aa12.42□□□□□ -0.42
SHMT2-228ENST00000557302 ZNF800Q2TB10 664 aaPredicted RBP eCLIP12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms