RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 GLYR1Q49A26 553 aaPredicted RBP15.19■□□□□ 0.02
VPS29-204ENST00000548259 ADAM5Q6NVV9 412 aa15.19■□□□□ 0.02
VPS29-204ENST00000548259 STAC2Q6ZMT1 411 aa15.19■□□□□ 0.02
VPS29-204ENST00000548259 C22orf34Q6ZV56 151 aa15.19■□□□□ 0.02
VPS29-204ENST00000548259 METTL25Q8N6Q8 603 aa15.19■□□□□ 0.02
VPS29-204ENST00000548259 FADS6Q8N9I5 356 aa15.19■□□□□ 0.02
VPS29-204ENST00000548259 STEAP2Q8NFT2 490 aa15.19■□□□□ 0.02
VPS29-204ENST00000548259 KCTD4Q8WVF5 259 aa15.19■□□□□ 0.02
VPS29-204ENST00000548259 HS6ST2Q96MM7 605 aa15.19■□□□□ 0.02
VPS29-204ENST00000548259 CDK15Q96Q40 435 aa15.19■□□□□ 0.02
VPS29-204ENST00000548259 AMBRA1Q9C0C7 1298 aa15.19■□□□□ 0.02
VPS29-204ENST00000548259 ESRP2Q9H6T0 727 aaKnown RBP15.19■□□□□ 0.02
VPS29-204ENST00000548259 HHATLQ9HCP6 504 aa15.19■□□□□ 0.02
VPS29-204ENST00000548259 GLRX2Q9NS18 164 aa15.19■□□□□ 0.02
VPS29-204ENST00000548259 TAS2R9Q9NYW1 312 aa15.19■□□□□ 0.02
VPS29-204ENST00000548259 UTS2RQ9UKP6 389 aa15.19■□□□□ 0.02
VPS29-204ENST00000548259 MCTS1Q9ULC4 181 aaKnown RBP15.19■□□□□ 0.02
VPS29-204ENST00000548259 NFU1Q9UMS0 254 aa15.19■□□□□ 0.02
VPS29-204ENST00000548259 ABCG2Q9UNQ0 655 aa15.19■□□□□ 0.02
VPS29-204ENST00000548259 SNX24Q9Y343 169 aa15.19■□□□□ 0.02
VPS29-204ENST00000548259 RNF115Q9Y4L5 304 aa15.19■□□□□ 0.02
VPS29-204ENST00000548259 OR2M5A3KFT3 312 aa15.18■□□□□ 0.02
VPS29-204ENST00000548259 H0YC42 278 aa15.18■□□□□ 0.02
VPS29-204ENST00000548259 PHF1O43189 567 aaPredicted RBP15.18■□□□□ 0.02
VPS29-204ENST00000548259 DLX3O60479 287 aa15.18■□□□□ 0.02
VPS29-204ENST00000548259 PLAUP00749 431 aa15.18■□□□□ 0.02
VPS29-204ENST00000548259 FAM157CP0CG43 387 aa15.18■□□□□ 0.02
VPS29-204ENST00000548259 CT45A8P0DMV1 189 aa15.18■□□□□ 0.02
VPS29-204ENST00000548259 CT45A9P0DMV2 189 aa15.18■□□□□ 0.02
VPS29-204ENST00000548259 STX2P32856 288 aa15.18■□□□□ 0.02
VPS29-204ENST00000548259 SUCLG1P53597 346 aaKnown RBP15.18■□□□□ 0.02
VPS29-204ENST00000548259 GAS1P54826 345 aa15.18■□□□□ 0.02
VPS29-204ENST00000548259 TPD52P55327 224 aaPredicted RBP15.18■□□□□ 0.02
VPS29-204ENST00000548259 CORO7P57737 925 aa15.18■□□□□ 0.02
VPS29-204ENST00000548259 CT45A2Q5DJT8 189 aa15.18■□□□□ 0.02
VPS29-204ENST00000548259 SGO1Q5FBB7 561 aa15.18■□□□□ 0.02
VPS29-204ENST00000548259 SLC44A2Q8IWA5 706 aaPredicted RBP15.18■□□□□ 0.02
VPS29-204ENST00000548259 OR2M3Q8NG83 312 aa15.18■□□□□ 0.02
VPS29-204ENST00000548259 RNF138Q8WVD3 245 aa15.18■□□□□ 0.02
VPS29-204ENST00000548259 EFHD2Q96C19 240 aaPredicted RBP15.18■□□□□ 0.02
VPS29-204ENST00000548259 VSTM2LQ96N03 204 aa15.18■□□□□ 0.02
VPS29-204ENST00000548259 NTMT1Q9BV86 223 aa15.18■□□□□ 0.02
VPS29-204ENST00000548259 HDHD5Q9BXW7 423 aa15.18■□□□□ 0.02
VPS29-204ENST00000548259 MRTO4Q9UKD2 239 aaKnown RBP15.18■□□□□ 0.02
VPS29-204ENST00000548259 TMCO1Q9UM00 188 aa15.18■□□□□ 0.02
VPS29-204ENST00000548259 OVOL3O00110 214 aa15.17■□□□□ 0.02
VPS29-204ENST00000548259 HAX1O00165 279 aa15.17■□□□□ 0.02
VPS29-204ENST00000548259 TP73O15350 636 aa15.17■□□□□ 0.02
VPS29-204ENST00000548259 CLOCKO15516 846 aa15.17■□□□□ 0.02
VPS29-204ENST00000548259 ZSCAN12O43309 604 aa15.17■□□□□ 0.02
VPS29-204ENST00000548259 SIX3O95343 332 aaPredicted RBP15.17■□□□□ 0.02
VPS29-204ENST00000548259 SYNGR4O95473 234 aa15.17■□□□□ 0.02
VPS29-204ENST00000548259 CD3EP07766 207 aa15.17■□□□□ 0.02
VPS29-204ENST00000548259 PSMB1P20618 241 aaKnown RBP15.17■□□□□ 0.02
VPS29-204ENST00000548259 IL11P20809 199 aa15.17■□□□□ 0.02
VPS29-204ENST00000548259 PAFAH1B1P43034 410 aa15.17■□□□□ 0.02
VPS29-204ENST00000548259 EIF1AXP47813 144 aaKnown RBP15.17■□□□□ 0.02
VPS29-204ENST00000548259 CLDN20P56880 219 aa15.17■□□□□ 0.02
VPS29-204ENST00000548259 ZNF628Q5EBL2 1059 aa15.17■□□□□ 0.02
VPS29-204ENST00000548259 GTF2IRD2BQ6EKJ0 949 aa15.17■□□□□ 0.02
VPS29-204ENST00000548259 ALKBH2Q6NS38 261 aa15.17■□□□□ 0.02
VPS29-204ENST00000548259 GTF2IRD2Q86UP8 949 aa15.17■□□□□ 0.02
VPS29-204ENST00000548259 EXOC3L1Q86VI1 746 aa15.17■□□□□ 0.02
VPS29-204ENST00000548259 CCDC116Q8IYX3 515 aa15.17■□□□□ 0.02
VPS29-204ENST00000548259 CENPLQ8N0S6 344 aaPredicted RBP15.17■□□□□ 0.02
VPS29-204ENST00000548259 UHMK1Q8TAS1 419 aaKnown RBP15.17■□□□□ 0.02
VPS29-204ENST00000548259 SMAP2Q8WU79 429 aaPredicted RBP15.17■□□□□ 0.02
VPS29-204ENST00000548259 TM4SF18Q96CE8 201 aa15.17■□□□□ 0.02
VPS29-204ENST00000548259 CNRIP1Q96F85 164 aaPredicted RBP15.17■□□□□ 0.02
VPS29-204ENST00000548259 ZNF681Q96N22 645 aa15.17■□□□□ 0.02
VPS29-204ENST00000548259 SLCO5A1Q9H2Y9 848 aa15.17■□□□□ 0.02
VPS29-204ENST00000548259 ALG2Q9H553 416 aa15.17■□□□□ 0.02
VPS29-204ENST00000548259 BRF2Q9HAW0 419 aa15.17■□□□□ 0.02
VPS29-204ENST00000548259 LRTM1Q9HBL6 345 aa15.17■□□□□ 0.02
VPS29-204ENST00000548259 ZBTB26Q9HCK0 441 aa15.17■□□□□ 0.02
VPS29-204ENST00000548259 MED11Q9P086 117 aa15.17■□□□□ 0.02
VPS29-204ENST00000548259 WHRNQ9P202 907 aa15.17■□□□□ 0.02
VPS29-204ENST00000548259 SNX6Q9UNH7 406 aa15.17■□□□□ 0.02
VPS29-204ENST00000548259 A0A1W2PP18 115 aa15.16■□□□□ 0.02
VPS29-204ENST00000548259 OR7A17O14581 309 aa15.16■□□□□ 0.02
VPS29-204ENST00000548259 EIF1AYO14602 144 aaKnown RBP15.16■□□□□ 0.02
VPS29-204ENST00000548259 SS18L1O75177 396 aaPredicted RBP15.16■□□□□ 0.02
VPS29-204ENST00000548259 COQ9O75208 318 aa15.16■□□□□ 0.02
VPS29-204ENST00000548259 AQP8O94778 261 aa15.16■□□□□ 0.02
VPS29-204ENST00000548259 C2P06681 752 aa15.16■□□□□ 0.02
VPS29-204ENST00000548259 PYGBP11216 843 aa15.16■□□□□ 0.02
VPS29-204ENST00000548259 ACVR1BP36896 505 aa15.16■□□□□ 0.02
VPS29-204ENST00000548259 PSMD4P55036 377 aaKnown RBP15.16■□□□□ 0.02
VPS29-204ENST00000548259 STX5Q13190 355 aa15.16■□□□□ 0.02
VPS29-204ENST00000548259 GGTA1PQ4G0N0 100 aa15.16■□□□□ 0.02
VPS29-204ENST00000548259 CYP27C1Q4G0S4 372 aa15.16■□□□□ 0.02
VPS29-204ENST00000548259 WDR75Q8IWA0 830 aaKnown RBP15.16■□□□□ 0.02
VPS29-204ENST00000548259 PTGR2Q8N8N7 351 aaPredicted RBP15.16■□□□□ 0.02
VPS29-204ENST00000548259 OR52B6Q8NGF0 335 aa15.16■□□□□ 0.02
VPS29-204ENST00000548259 SELENOMQ8WWX9 145 aa15.16■□□□□ 0.02
VPS29-204ENST00000548259 MTBPQ96DY7 904 aa15.16■□□□□ 0.02
VPS29-204ENST00000548259 C1GALT1C1Q96EU7 318 aa15.16■□□□□ 0.02
VPS29-204ENST00000548259 USB1Q9BQ65 265 aaKnown RBP15.16■□□□□ 0.02
VPS29-204ENST00000548259 RHNO1Q9BSD3 238 aa15.16■□□□□ 0.02
VPS29-204ENST00000548259 FOLH1BQ9HBA9 442 aa15.16■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms