RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 MAN1A2O60476 641 aa9.22□□□□□ -0.93
SS18-205ENST00000542420 HMGN1P05114 100 aa9.22□□□□□ -0.93
SS18-205ENST00000542420 ACP2P11117 423 aa9.22□□□□□ -0.93
SS18-205ENST00000542420 HOXB3P14651 431 aaPredicted RBP9.22□□□□□ -0.93
SS18-205ENST00000542420 GABRG2P18507 467 aa9.22□□□□□ -0.93
SS18-205ENST00000542420 POU3F3P20264 500 aaPredicted RBP9.22□□□□□ -0.93
SS18-205ENST00000542420 POU1F1P28069 291 aa9.22□□□□□ -0.93
SS18-205ENST00000542420 ACSL1P33121 698 aa9.22□□□□□ -0.93
SS18-205ENST00000542420 S100A5P33763 92 aa9.22□□□□□ -0.93
SS18-205ENST00000542420 OMPP47874 163 aa9.22□□□□□ -0.93
SS18-205ENST00000542420 RAB38P57729 211 aa9.22□□□□□ -0.93
SS18-205ENST00000542420 BNC1Q01954 994 aa9.22□□□□□ -0.93
SS18-205ENST00000542420 CHRNEQ04844 493 aa9.22□□□□□ -0.93
SS18-205ENST00000542420 SELENBP1Q13228 472 aa9.22□□□□□ -0.93
SS18-205ENST00000542420 BIKQ13323 160 aa9.22□□□□□ -0.93
SS18-205ENST00000542420 CCINQ13939 588 aa9.22□□□□□ -0.93
SS18-205ENST00000542420 GPR18Q14330 331 aa9.22□□□□□ -0.93
SS18-205ENST00000542420 GINS1Q14691 196 aa9.22□□□□□ -0.93
SS18-205ENST00000542420 SPHARQ15513 63 aa9.22□□□□□ -0.93
SS18-205ENST00000542420 SYT16Q17RD7 645 aa9.22□□□□□ -0.93
SS18-205ENST00000542420 COL13A1Q5TAT6 717 aaPredicted RBP9.22□□□□□ -0.93
SS18-205ENST00000542420 TMEM236Q5W0B7 351 aa9.22□□□□□ -0.93
SS18-205ENST00000542420 FAAH2Q6GMR7 532 aa9.22□□□□□ -0.93
SS18-205ENST00000542420 MBOAT2Q6ZWT7 520 aa9.22□□□□□ -0.93
SS18-205ENST00000542420 COMTD1Q86VU5 262 aa9.22□□□□□ -0.93
SS18-205ENST00000542420 RANBP3LQ86VV4 465 aaPredicted RBP9.22□□□□□ -0.93
SS18-205ENST00000542420 KCT2Q8NC54 265 aa9.22□□□□□ -0.93
SS18-205ENST00000542420 RPL3LQ92901 407 aaKnown RBP9.22□□□□□ -0.93
SS18-205ENST00000542420 C16orf58Q96GQ5 468 aa9.22□□□□□ -0.93
SS18-205ENST00000542420 OPALINQ96PE5 141 aa9.22□□□□□ -0.93
SS18-205ENST00000542420 COQ7Q99807 217 aa9.22□□□□□ -0.93
SS18-205ENST00000542420 PCED1AQ9H1Q7 454 aa9.22□□□□□ -0.93
SS18-205ENST00000542420 IL20Q9NYY1 176 aa9.22□□□□□ -0.93
SS18-205ENST00000542420 CPNE7Q9UBL6 633 aa9.22□□□□□ -0.93
SS18-205ENST00000542420 RABL2BQ9UNT1 228 aa9.22□□□□□ -0.93
SS18-205ENST00000542420 PRELID1Q9Y255 219 aa9.22□□□□□ -0.93
SS18-205ENST00000542420 GLOD5A6NK44 160 aa9.22□□□□□ -0.93
SS18-205ENST00000542420 FAM170BA6NMN3 283 aa9.22□□□□□ -0.93
SS18-205ENST00000542420 CHURC1-FNTBB4DL54 471 aa9.22□□□□□ -0.93
SS18-205ENST00000542420 LOC110117498-PIK3R3F6TDL0 507 aa9.22□□□□□ -0.93
SS18-205ENST00000542420 RGS13O14921 159 aa9.22□□□□□ -0.93
SS18-205ENST00000542420 CTSVO60911 334 aa9.22□□□□□ -0.93
SS18-205ENST00000542420 PRKRAO75569 313 aaKnown RBP9.22□□□□□ -0.93
SS18-205ENST00000542420 GPR75O95800 540 aa9.22□□□□□ -0.93
SS18-205ENST00000542420 CHRNB1P11230 501 aa9.22□□□□□ -0.93
SS18-205ENST00000542420 MAGP20916 626 aa9.22□□□□□ -0.93
SS18-205ENST00000542420 NR4A1P22736 598 aa9.22□□□□□ -0.93
SS18-205ENST00000542420 CAPZA2P47755 286 aa9.22□□□□□ -0.93
SS18-205ENST00000542420 RGS8P57771 180 aaPredicted RBP9.22□□□□□ -0.93
SS18-205ENST00000542420 EEF1A1P68104 462 aaKnown RBP9.22□□□□□ -0.93
SS18-205ENST00000542420 ACSM1Q08AH1 577 aa9.22□□□□□ -0.93
SS18-205ENST00000542420 ITGADQ13349 1161 aa9.22□□□□□ -0.93
SS18-205ENST00000542420 RUNX2Q13950 521 aa9.22□□□□□ -0.93
SS18-205ENST00000542420 TRIM16LQ309B1 348 aa9.22□□□□□ -0.93
SS18-205ENST00000542420 PUS10Q3MIT2 529 aaKnown RBP9.22□□□□□ -0.93
SS18-205ENST00000542420 SYT14P1Q58G82 188 aa9.22□□□□□ -0.93
SS18-205ENST00000542420 TYW3Q6IPR3 259 aaKnown RBP9.22□□□□□ -0.93
SS18-205ENST00000542420 Q6ZSR6 202 aa9.22□□□□□ -0.93
SS18-205ENST00000542420 RRM2BQ7LG56 351 aa9.22□□□□□ -0.93
SS18-205ENST00000542420 OOSP2Q86WS3 158 aa9.22□□□□□ -0.93
SS18-205ENST00000542420 TCEANCQ8N8B7 351 aa9.22□□□□□ -0.93
SS18-205ENST00000542420 FLCNQ8NFG4 579 aa9.22□□□□□ -0.93
SS18-205ENST00000542420 OR7G2Q8NG99 324 aa9.22□□□□□ -0.93
SS18-205ENST00000542420 PIK3R3Q92569 461 aa9.22□□□□□ -0.93
SS18-205ENST00000542420 TSACCQ96A04 125 aaPredicted RBP9.22□□□□□ -0.93
SS18-205ENST00000542420 ZNF582Q96NG8 517 aaPredicted RBP9.22□□□□□ -0.93
SS18-205ENST00000542420 GDF15Q99988 308 aa9.22□□□□□ -0.93
SS18-205ENST00000542420 CHRNA10Q9GZZ6 450 aa9.22□□□□□ -0.93
SS18-205ENST00000542420 FN3KQ9H479 309 aa9.22□□□□□ -0.93
SS18-205ENST00000542420 SYNPO2LQ9H987 977 aa9.22□□□□□ -0.93
SS18-205ENST00000542420 CPNE5Q9HCH3 593 aa9.22□□□□□ -0.93
SS18-205ENST00000542420 STUB1Q9UNE7 303 aa9.22□□□□□ -0.93
SS18-205ENST00000542420 TMEM5Q9Y2B1 443 aa9.22□□□□□ -0.93
SS18-205ENST00000542420 WDR45Q9Y484 360 aa9.22□□□□□ -0.93
SS18-205ENST00000542420 TCRBV21S2A2A0A5A6 115 aa9.21□□□□□ -0.93
SS18-205ENST00000542420 OR6C74A6NCV1 312 aa9.21□□□□□ -0.93
SS18-205ENST00000542420 NOTOA8MTQ0 251 aa9.21□□□□□ -0.93
SS18-205ENST00000542420 A8MU76 341 aa9.21□□□□□ -0.93
SS18-205ENST00000542420 ARHGAP33O14559 1287 aa9.21□□□□□ -0.93
SS18-205ENST00000542420 MYL12BO14950 172 aa9.21□□□□□ -0.93
SS18-205ENST00000542420 KIAA0513O60268 411 aa9.21□□□□□ -0.93
SS18-205ENST00000542420 GALR3O60755 368 aaPredicted RBP9.21□□□□□ -0.93
SS18-205ENST00000542420 MED26O95402 600 aa9.21□□□□□ -0.93
SS18-205ENST00000542420 UBL4AP11441 157 aa9.21□□□□□ -0.93
SS18-205ENST00000542420 CPEP16870 476 aa9.21□□□□□ -0.93
SS18-205ENST00000542420 GALP22466 123 aa9.21□□□□□ -0.93
SS18-205ENST00000542420 PSMA1P25786 263 aaKnown RBP9.21□□□□□ -0.93
SS18-205ENST00000542420 LTBRP36941 435 aa9.21□□□□□ -0.93
SS18-205ENST00000542420 DGKEP52429 567 aa9.21□□□□□ -0.93
SS18-205ENST00000542420 LEXMQ3ZCV2 418 aa9.21□□□□□ -0.93
SS18-205ENST00000542420 TPRG1LQ5T0D9 272 aa9.21□□□□□ -0.93
SS18-205ENST00000542420 TMEM92Q6UXU6 159 aa9.21□□□□□ -0.93
SS18-205ENST00000542420 ZNF730Q6ZMV8 503 aa9.21□□□□□ -0.93
SS18-205ENST00000542420 PLEKHM3Q6ZWE6 761 aa9.21□□□□□ -0.93
SS18-205ENST00000542420 FAM20CQ8IXL6 584 aa9.21□□□□□ -0.93
SS18-205ENST00000542420 OR7G1Q8NGA0 311 aa9.21□□□□□ -0.93
SS18-205ENST00000542420 LILRB4Q8NHJ6 448 aa9.21□□□□□ -0.93
SS18-205ENST00000542420 RPLP0P6Q8NHW5 317 aa9.21□□□□□ -0.93
SS18-205ENST00000542420 BRIX1Q8TDN6 353 aaKnown RBP9.21□□□□□ -0.93
SS18-205ENST00000542420 CTHRC1Q96CG8 243 aa9.21□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms