RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 IL12BP29460 328 aa13.92□□□□□ -0.18
CLSTN3-213ENST00000541953 CLCQ05315 142 aa13.92□□□□□ -0.18
CLSTN3-213ENST00000541953 RAET1LQ5VY80 246 aa13.92□□□□□ -0.18
CLSTN3-213ENST00000541953 SCIMPQ6UWF3 145 aa13.92□□□□□ -0.18
CLSTN3-213ENST00000541953 TAOK1Q7L7X3 1001 aa13.92□□□□□ -0.18
CLSTN3-213ENST00000541953 ZNF572Q7Z3I7 529 aaPredicted RBP13.92□□□□□ -0.18
CLSTN3-213ENST00000541953 OR4K17Q8NGC6 315 aa13.92□□□□□ -0.18
CLSTN3-213ENST00000541953 C16orf78Q8WTQ4 265 aa13.92□□□□□ -0.18
CLSTN3-213ENST00000541953 DCAKDQ8WVC6 231 aa13.92□□□□□ -0.18
CLSTN3-213ENST00000541953 C11orf24Q96F05 449 aaPredicted RBP13.92□□□□□ -0.18
CLSTN3-213ENST00000541953 NPAS1Q99742 590 aa13.92□□□□□ -0.18
CLSTN3-213ENST00000541953 MRPL57Q9BQC6 102 aaKnown RBP13.92□□□□□ -0.18
CLSTN3-213ENST00000541953 FAIM2Q9BWQ8 316 aa13.92□□□□□ -0.18
CLSTN3-213ENST00000541953 RNF122Q9H9V4 155 aa13.92□□□□□ -0.18
CLSTN3-213ENST00000541953 PPP4R1LQ9P1A2 415 aa13.92□□□□□ -0.18
CLSTN3-213ENST00000541953 VPS29Q9UBQ0 182 aa13.92□□□□□ -0.18
CLSTN3-213ENST00000541953 USF3Q68DE3 2245 aa13.92□□□□□ -0.18
CLSTN3-213ENST00000541953 ATRQ13535 2644 aa13.92□□□□□ -0.18
CLSTN3-213ENST00000541953 HIVEP2P31629 2446 aa13.91□□□□□ -0.18
CLSTN3-213ENST00000541953 H3BML4 177 aa13.91□□□□□ -0.18
CLSTN3-213ENST00000541953 ARHGEF9O43307 516 aa13.91□□□□□ -0.18
CLSTN3-213ENST00000541953 GMFGO60234 142 aa13.91□□□□□ -0.18
CLSTN3-213ENST00000541953 ABCB7O75027 752 aa13.91□□□□□ -0.18
CLSTN3-213ENST00000541953 PLAUP00749 431 aa13.91□□□□□ -0.18
CLSTN3-213ENST00000541953 NID1P14543 1247 aa13.91□□□□□ -0.18
CLSTN3-213ENST00000541953 POU2F1P14859 743 aa13.91□□□□□ -0.18
CLSTN3-213ENST00000541953 HK1P19367 917 aa13.91□□□□□ -0.18
CLSTN3-213ENST00000541953 SLC6A8P48029 635 aa13.91□□□□□ -0.18
CLSTN3-213ENST00000541953 PNLIPRP2P54317 469 aa13.91□□□□□ -0.18
CLSTN3-213ENST00000541953 DSCR4P56555 118 aaPredicted RBP13.91□□□□□ -0.18
CLSTN3-213ENST00000541953 TRA2BP62995 288 aaKnown RBP13.91□□□□□ -0.18
CLSTN3-213ENST00000541953 KRTAP1-1Q07627 177 aa13.91□□□□□ -0.18
CLSTN3-213ENST00000541953 ZNF155Q12901 538 aaPredicted RBP13.91□□□□□ -0.18
CLSTN3-213ENST00000541953 EFR3AQ14156 821 aa13.91□□□□□ -0.18
CLSTN3-213ENST00000541953 PON3Q15166 354 aa13.91□□□□□ -0.18
CLSTN3-213ENST00000541953 BCL2A1Q16548 175 aa13.91□□□□□ -0.18
CLSTN3-213ENST00000541953 SH2D4BQ5SQS7 431 aa13.91□□□□□ -0.18
CLSTN3-213ENST00000541953 APOOLQ6UXV4 268 aa13.91□□□□□ -0.18
CLSTN3-213ENST00000541953 SYT10Q6XYQ8 523 aa13.91□□□□□ -0.18
CLSTN3-213ENST00000541953 MTBPQ96DY7 904 aa13.91□□□□□ -0.18
CLSTN3-213ENST00000541953 KLHDC3Q9BQ90 382 aa13.91□□□□□ -0.18
CLSTN3-213ENST00000541953 MRPL46Q9H2W6 279 aaKnown RBP13.91□□□□□ -0.18
CLSTN3-213ENST00000541953 PSME2Q9UL46 239 aa13.91□□□□□ -0.18
CLSTN3-213ENST00000541953 TMCO1Q9UM00 188 aa13.91□□□□□ -0.18
CLSTN3-213ENST00000541953 SNX6Q9UNH7 406 aa13.91□□□□□ -0.18
CLSTN3-213ENST00000541953 TIMM22Q9Y584 194 aa13.91□□□□□ -0.18
CLSTN3-213ENST00000541953 SONP18583 2426 aaKnown RBP13.9□□□□□ -0.18
CLSTN3-213ENST00000541953 PLOD3O60568 738 aa13.9□□□□□ -0.18
CLSTN3-213ENST00000541953 CRHP06850 196 aa13.9□□□□□ -0.18
CLSTN3-213ENST00000541953 INHBAP08476 426 aa13.9□□□□□ -0.18
CLSTN3-213ENST00000541953 PEPDP12955 493 aa13.9□□□□□ -0.18
CLSTN3-213ENST00000541953 ECHS1P30084 290 aa13.9□□□□□ -0.18
CLSTN3-213ENST00000541953 TIA1P31483 386 aaKnown RBP eCLIP13.9□□□□□ -0.18
CLSTN3-213ENST00000541953 CAPRIN1Q14444 709 aaKnown RBP13.9□□□□□ -0.18
CLSTN3-213ENST00000541953 ERCC6LQ2NKX8 1250 aa13.9□□□□□ -0.18
CLSTN3-213ENST00000541953 TSNAXIP1Q2TAA8 658 aa13.9□□□□□ -0.18
CLSTN3-213ENST00000541953 ZNF678Q5SXM1 525 aa13.9□□□□□ -0.18
CLSTN3-213ENST00000541953 TMEM107Q6UX40 140 aa13.9□□□□□ -0.18
CLSTN3-213ENST00000541953 GGNQ86UU5 652 aa13.9□□□□□ -0.18
CLSTN3-213ENST00000541953 PIGTQ969N2 578 aa13.9□□□□□ -0.18
CLSTN3-213ENST00000541953 SLC35C2Q9NQQ7 365 aa13.9□□□□□ -0.18
CLSTN3-213ENST00000541953 TMEM216Q9P0N5 145 aa13.9□□□□□ -0.18
CLSTN3-213ENST00000541953 DMGDHQ9UI17 866 aaKnown RBP13.9□□□□□ -0.18
CLSTN3-213ENST00000541953 CLEC4AQ9UMR7 237 aa13.9□□□□□ -0.18
CLSTN3-213ENST00000541953 MXRA5Q9NR99 2828 aa13.89□□□□□ -0.19
CLSTN3-213ENST00000541953 GNG14A0A1W2PPG7 69 aa13.89□□□□□ -0.19
CLSTN3-213ENST00000541953 POC1B-GALNT4F8VUJ3 575 aa13.89□□□□□ -0.19
CLSTN3-213ENST00000541953 EMC8O43402 210 aa13.89□□□□□ -0.19
CLSTN3-213ENST00000541953 DLX3O60479 287 aa13.89□□□□□ -0.19
CLSTN3-213ENST00000541953 PSMG1O95456 288 aa13.89□□□□□ -0.19
CLSTN3-213ENST00000541953 IGKV1D-16P01601 117 aa13.89□□□□□ -0.19
CLSTN3-213ENST00000541953 JUNP05412 331 aaKnown RBP13.89□□□□□ -0.19
CLSTN3-213ENST00000541953 GCAP28676 217 aa13.89□□□□□ -0.19
CLSTN3-213ENST00000541953 PHBP35232 272 aa13.89□□□□□ -0.19
CLSTN3-213ENST00000541953 PTH2RP49190 550 aa13.89□□□□□ -0.19
CLSTN3-213ENST00000541953 PCYT1AP49585 367 aa13.89□□□□□ -0.19
CLSTN3-213ENST00000541953 FOXA1P55317 472 aa13.89□□□□□ -0.19
CLSTN3-213ENST00000541953 BTKQ06187 659 aa13.89□□□□□ -0.19
CLSTN3-213ENST00000541953 CSTF3Q12996 717 aaKnown RBP13.89□□□□□ -0.19
CLSTN3-213ENST00000541953 EXOC3L2Q2M3D2 409 aa13.89□□□□□ -0.19
CLSTN3-213ENST00000541953 TEX35Q5T0J7 233 aa13.89□□□□□ -0.19
CLSTN3-213ENST00000541953 OR2A2Q6IF42 318 aa13.89□□□□□ -0.19
CLSTN3-213ENST00000541953 C8orf74Q6P047 294 aa13.89□□□□□ -0.19
CLSTN3-213ENST00000541953 MARCH3Q86UD3 253 aa13.89□□□□□ -0.19
CLSTN3-213ENST00000541953 FAM9CQ8IZT9 166 aa13.89□□□□□ -0.19
CLSTN3-213ENST00000541953 CDC26Q8NHZ8 85 aa13.89□□□□□ -0.19
CLSTN3-213ENST00000541953 ERP27Q96DN0 273 aa13.89□□□□□ -0.19
CLSTN3-213ENST00000541953 C1GALT1C1Q96EU7 318 aa13.89□□□□□ -0.19
CLSTN3-213ENST00000541953 ZNF382Q96SR6 550 aa13.89□□□□□ -0.19
CLSTN3-213ENST00000541953 ZNF226Q9NYT6 803 aa13.89□□□□□ -0.19
CLSTN3-213ENST00000541953 OR10H1Q9Y4A9 318 aa13.89□□□□□ -0.19
CLSTN3-213ENST00000541953 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP13.88□□□□□ -0.19
CLSTN3-213ENST00000541953 GXYLT2A0PJZ3 443 aa13.88□□□□□ -0.19
CLSTN3-213ENST00000541953 MYO1GB0I1T2 1018 aa13.88□□□□□ -0.19
CLSTN3-213ENST00000541953 C16orf97H3BN30 126 aa13.88□□□□□ -0.19
CLSTN3-213ENST00000541953 KLF4O43474 513 aa13.88□□□□□ -0.19
CLSTN3-213ENST00000541953 SUPT7LO94864 414 aa13.88□□□□□ -0.19
CLSTN3-213ENST00000541953 CD8BP10966 210 aa13.88□□□□□ -0.19
CLSTN3-213ENST00000541953 COL6A2P12110 1019 aa13.88□□□□□ -0.19
CLSTN3-213ENST00000541953 CASQ1P31415 396 aa13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 72.9 ms